Structure of equine infectious anemia virus matrix protein.
Abstract: The Gag polyprotein is key to the budding of retroviruses from host cells and is cleaved upon virion maturation, the N-terminal membrane-binding domain forming the matrix protein (MA). The 2.8-A resolution crystal structure of MA of equine infectious anemia virus (EIAV), a lentivirus, reveals that, despite showing no sequence similarity, more than half of the molecule can be superimposed on the MAs of human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV). However, unlike the structures formed by HIV-1 and SIV MAs, the oligomerization state observed is not trimeric. We discuss the potential of this molecule for membrane binding in the light of conformational differences between EIAV MA and HIV or SIV MA.
Publication Date: 2002-01-19 PubMed ID: 11799182PubMed Central: PMC135893DOI: 10.1128/jvi.76.4.1876-1883.2002Google Scholar: Lookup
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Summary
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The research article comprises a study about the structure of the matrix protein (MA) of equine infectious anemia virus (EIAV), comparing it to the MAs of HIV-1 and SIV and discussing its potential for membrane binding.
Overview of the Research
- The article focuses on understanding the matrix protein of EIAV. The matrix protein plays a crucial role in retroviruses, as it’s formed from the cleavage of the Gag polyprotein, aiding in the release of retroviruses from host cells.
- The structure of this MA from EIAV was examined at a resolution of 2.8 Angstroms using crystallography, providing a detailed visualization of the molecular arrangement.
Comparison with other Matrix Proteins
- A key aspect of the research was to compare the EIAV MA structure with MAs from other retroviruses, specifically human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV).
- Despite showing no sequence similarity, more than half of the EIAV MA could be superimposed on the MAs of HIV-1 and SIV, indicating similar structural patterns.
- However, the research noted a difference in that the oligomerization state of EIAV MA is not trimeric, unlike the structures formed by HIV-1 and SIV MAs.
Potential for Membrane Binding
- The research discusses the potential of EIAV MA for binding to cellular membranes, a crucial step in the lifecycle of a retrovirus.
- This discussion is informed by the observed conformational differences between the MAs of EIAV and those of HIV or SIV.
- The differences suggest possible variations in membrane-binding capacity, which can provide insights into the unique characteristics of EIAV and its interaction with host cells.
Significance of the Research
- Overall, the research provides insightful views into the structure of EIAV’s MA and how it compares to other well-studied retroviruses.
- These findings can help in understanding the molecular mechanisms behind retroviral replication and budding as well as pave way for the development of potential antiretroviral therapies.
Cite This Article
APA
Hatanaka H, Iourin O, Rao Z, Fry E, Kingsman A, Stuart DI.
(2002).
Structure of equine infectious anemia virus matrix protein.
J Virol, 76(4), 1876-1883.
https://doi.org/10.1128/jvi.76.4.1876-1883.2002 Publication
Researcher Affiliations
- Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, United Kingdom.
MeSH Terms
- Amino Acid Sequence
- Crystallization
- Crystallography, X-Ray
- Gene Products, gag / genetics
- HIV Antigens / genetics
- Infectious Anemia Virus, Equine / chemistry
- Infectious Anemia Virus, Equine / metabolism
- Models, Molecular
- Molecular Sequence Data
- Protein Conformation
- Sequence Alignment
- Simian Immunodeficiency Virus / metabolism
- Viral Matrix Proteins / chemistry
- Viral Matrix Proteins / genetics
- Viral Proteins
- gag Gene Products, Human Immunodeficiency Virus
References
This article includes 52 references
- Ames JB, Ishima R, Tanaka T, Gordon JI, Stryer L, Ikura M. Molecular mechanics of calcium-myristoyl switches.. Nature 1997 Sep 11;389(6647):198-202.
- Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography & NMR system: A new software suite for macromolecular structure determination.. Acta Crystallogr D Biol Crystallogr 1998 Sep 1;54(Pt 5):905-21.
- Bryant M, Ratner L. Myristoylation-dependent replication and assembly of human immunodeficiency virus 1.. Proc Natl Acad Sci U S A 1990 Jan;87(2):523-7.
- Bukrinskaya AG, Ghorpade A, Heinzinger NK, Smithgall TE, Lewis RE, Stevenson M. Phosphorylation-dependent human immunodeficiency virus type 1 infection and nuclear targeting of viral DNA.. Proc Natl Acad Sci U S A 1996 Jan 9;93(1):367-71.
- Bukrinsky MI, Haggerty S, Dempsey MP, Sharova N, Adzhubel A, Spitz L, Lewis P, Goldfarb D, Emerman M, Stevenson M. A nuclear localization signal within HIV-1 matrix protein that governs infection of non-dividing cells.. Nature 1993 Oct 14;365(6447):666-9.
- Coffin, J. M. 1996. Retroviridae: the viruses and their replication, p. 1767-1847. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
- Conte MR, Matthews S. Retroviral matrix proteins: a structural perspective.. Virology 1998 Jul 5;246(2):191-8.
- Conte MR, Klikova M, Hunter E, Ruml T, Matthews S. The three-dimensional solution structure of the matrix protein from the type D retrovirus, the Mason-Pfizer monkey virus, and implications for the morphology of retroviral assembly.. EMBO J 1997 Oct 1;16(19):5819-26.
- de La Fortelle E, Bricogne G. [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.. Methods Enzymol 1997;276:472-494.
- Dupont S, Sharova N, DéHoratius C, Virbasius CM, Zhu X, Bukrinskaya AG, Stevenson M, Green MR. A novel nuclear export activity in HIV-1 matrix protein required for viral replication.. Nature 1999 Dec 9;402(6762):681-5.
- Esnouf RM. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities.. J Mol Graph Model 1997 Apr;15(2):132-4, 112-3.
- Esnouf RM. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps.. Acta Crystallogr D Biol Crystallogr 1999 Apr;55(Pt 4):938-40.
- Freed EO. HIV-1 gag proteins: diverse functions in the virus life cycle.. Virology 1998 Nov 10;251(1):1-15.
- French S, Wilson K. On the treatment of negative intensity observations. Acta Crystallogr. A 34:517-525.
- Fuller SD, Wilk T, Gowen BE, Kräusslich HG, Vogt VM. Cryo-electron microscopy reveals ordered domains in the immature HIV-1 particle.. Curr Biol 1997 Oct 1;7(10):729-38.
- Göttlinger HG, Sodroski JG, Haseltine WA. Role of capsid precursor processing and myristoylation in morphogenesis and infectivity of human immunodeficiency virus type 1.. Proc Natl Acad Sci U S A 1989 Aug;86(15):5781-5.
- Gouet P, Courcelle E, Stuart DI, Métoz F. ESPript: analysis of multiple sequence alignments in PostScript.. Bioinformatics 1999 Apr;15(4):305-8.
- Harlos K. Micro-bridges for sitting-drop crystallizations. J. Appl. Crystallogr. 25:536-538.
- Henderson LE, Sowder RC, Smythers GW, Oroszlan S. Chemical and immunological characterizations of equine infectious anemia virus gag-encoded proteins.. J Virol 1987 Apr;61(4):1116-24.
- Hermida-Matsumoto L, Resh MD. Human immunodeficiency virus type 1 protease triggers a myristoyl switch that modulates membrane binding of Pr55(gag) and p17MA.. J Virol 1999 Mar;73(3):1902-8.
- Hill CP, Worthylake D, Bancroft DP, Christensen AM, Sundquist WI. Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: implications for membrane association and assembly.. Proc Natl Acad Sci U S A 1996 Apr 2;93(7):3099-104.
- Joag, S. V., E. B. Stephens, and O. Narayan. 1996. Lentiviruses, p. 1977-1996. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
- Jones TA. Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO.. Methods Enzymol 1985;115:157-71.
- Jones TA, Zou JY, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models.. Acta Crystallogr A 1991 Mar 1;47 ( Pt 2):110-9.
- Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
- LeMaster DM, Richards FM. 1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type.. Biochemistry 1985 Dec 3;24(25):7263-8.
- Lever AM. HIV and other lentivirus-based vectors.. Gene Ther 1996 Jun;3(6):470-1.
- Massiah MA, Starich MR, Paschall C, Summers MF, Christensen AM, Sundquist WI. Three-dimensional structure of the human immunodeficiency virus type 1 matrix protein.. J Mol Biol 1994 Nov 25;244(2):198-223.
- Massiah MA, Worthylake D, Christensen AM, Sundquist WI, Hill CP, Summers MF. Comparison of the NMR and X-ray structures of the HIV-1 matrix protein: evidence for conformational changes during viral assembly.. Protein Sci 1996 Dec;5(12):2391-8.
- Matthews S, Barlow P, Boyd J, Barton G, Russell R, Mills H, Cunningham M, Meyers N, Burns N, Clark N. Structural similarity between the p17 matrix protein of HIV-1 and interferon-gamma.. Nature 1994 Aug 25;370(6491):666-8.
- Matthews S, Barlow P, Clark N, Kingsman S, Kingsman A, Campbell I. Refined solution structure of p17, the HIV matrix protein.. Biochem Soc Trans 1995 Nov;23(4):725-9.
- Maury W. Regulation of equine infectious anemia virus expression.. J Biomed Sci 1998;5(1):11-23.
- Merritt EA, Murphy ME. Raster3D Version 2.0. A program for photorealistic molecular graphics.. Acta Crystallogr D Biol Crystallogr 1994 Nov 1;50(Pt 6):869-73.
- Mitrophanous K, Yoon S, Rohll J, Patil D, Wilkes F, Kim V, Kingsman S, Kingsman A, Mazarakis N. Stable gene transfer to the nervous system using a non-primate lentiviral vector.. Gene Ther 1999 Nov;6(11):1808-18.
- Nermut MV, Hockley DJ, Jowett JB, Jones IM, Garreau M, Thomas D. Fullerene-like organization of HIV gag-protein shell in virus-like particles produced by recombinant baculovirus.. Virology 1994 Jan;198(1):288-96.
- Nicholls A, Sharp KA, Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.. Proteins 1991;11(4):281-96.
- Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode.. Methods Enzymol 1997;276:307-26.
- Palmiter RD, Gagnon J, Vogt VM, Ripley S, Eisenman RN. The NH2-terminal sequence of the avian oncovirus gag precursor polyprotein (Pr76gag).. Virology 1978 Dec;91(2):423-33.
- Provitera P, Bouamr F, Murray D, Carter C, Scarlata S. Binding of equine infectious anemia virus matrix protein to membrane bilayers involves multiple interactions.. J Mol Biol 2000 Feb 25;296(3):887-98.
- Rao Z, Belyaev AS, Fry E, Roy P, Jones IM, Stuart DI. Crystal structure of SIV matrix antigen and implications for virus assembly.. Nature 1995 Dec 14;378(6558):743-7.
- Reil H, Bukovsky AA, Gelderblom HR, Göttlinger HG. Efficient HIV-1 replication can occur in the absence of the viral matrix protein.. EMBO J 1998 May 1;17(9):2699-708.
- Rhee SS, Hunter E. A single amino acid substitution within the matrix protein of a type D retrovirus converts its morphogenesis to that of a type C retrovirus.. Cell 1990 Oct 5;63(1):77-86.
- Schultz AM, Henderson LE, Oroszlan S. Fatty acylation of proteins.. Annu Rev Cell Biol 1988;4:611-47.
- Spearman P, Horton R, Ratner L, Kuli-Zade I. Membrane binding of human immunodeficiency virus type 1 matrix protein in vivo supports a conformational myristyl switch mechanism.. J Virol 1997 Sep;71(9):6582-92.
- Stephens RM, Casey JW, Rice NR. Equine infectious anemia virus gag and pol genes: relatedness to visna and AIDS virus.. Science 1986 Feb 7;231(4738):589-94.
- Stevenson M. Portals of entry: uncovering HIV nuclear transport pathways.. Trends Cell Biol 1996 Jan;6(1):9-15.
- Stuart DI, Levine M, Muirhead H, Stammers DK. Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A.. J Mol Biol 1979 Oct 15;134(1):109-42.
- von Schwedler UK, Stemmler TL, Klishko VY, Li S, Albertine KH, Davis DR, Sundquist WI. Proteolytic refolding of the HIV-1 capsid protein amino-terminus facilitates viral core assembly.. EMBO J 1998 Mar 16;17(6):1555-68.
- Wilk T, Gross I, Gowen BE, Rutten T, de Haas F, Welker R, Kräusslich HG, Boulanger P, Fuller SD. Organization of immature human immunodeficiency virus type 1.. J Virol 2001 Jan;75(2):759-71.
- Wills JW, Craven RC, Achacoso JA. Creation and expression of myristylated forms of Rous sarcoma virus gag protein in mammalian cells.. J Virol 1989 Oct;63(10):4331-43.
- Zhou W, Parent LJ, Wills JW, Resh MD. Identification of a membrane-binding domain within the amino-terminal region of human immunodeficiency virus type 1 Gag protein which interacts with acidic phospholipids.. J Virol 1994 Apr;68(4):2556-69.
- Zhou W, Resh MD. Differential membrane binding of the human immunodeficiency virus type 1 matrix protein.. J Virol 1996 Dec;70(12):8540-8.
Citations
This article has been cited 21 times.- Bussienne C, Marquet R, Paillart JC, Bernacchi S. Post-Translational Modifications of Retroviral HIV-1 Gag Precursors: An Overview of Their Biological Role.. Int J Mol Sci 2021 Mar 11;22(6).
- Brown JB, Summers HR, Brown LA, Marchant J, Canova PN, O'Hern CT, Abbott ST, Nyaunu C, Maxwell S, Johnson T, Moser MB, Ablan SD, Carter H, Freed EO, Summers MF. Structural and Mechanistic Studies of the Rare Myristoylation Signal of the Feline Immunodeficiency Virus.. J Mol Biol 2020 Jun 26;432(14):4076-4091.
- Doležal M, Zábranský A, Dostál J, Vaněk O, Brynda J, Lepšík M, Hadravová R, Pichová I. Myristoylation drives dimerization of matrix protein from mouse mammary tumor virus.. Retrovirology 2016 Jan 5;13:2.
- Zhang Z, Ma J, Zhang X, Su C, Yao QC, Wang X. Equine Infectious Anemia Virus Gag Assembly and Export Are Directed by Matrix Protein through trans-Golgi Networks and Cellular Vesicles.. J Virol 2016 Feb 15;90(4):1824-38.
- Alfadhli A, Barklis E. The roles of lipids and nucleic acids in HIV-1 assembly.. Front Microbiol 2014;5:253.
- Serrière J, Robert X, Perez M, Gouet P, Guillon C. Biophysical characterization and crystal structure of the Feline Immunodeficiency Virus p15 matrix protein.. Retrovirology 2013 Jun 24;10:64.
- Goldstone DC, Flower TG, Ball NJ, Sanz-Ramos M, Yap MW, Ogrodowicz RW, Stanke N, Reh J, Lindemann D, Stoye JP, Taylor IA. A unique spumavirus Gag N-terminal domain with functional properties of orthoretroviral matrix and capsid.. PLoS Pathog 2013 May;9(5):e1003376.
- Datta SA, Zuo X, Clark PK, Campbell SJ, Wang YX, Rein A. Solution properties of murine leukemia virus gag protein: differences from HIV-1 gag.. J Virol 2011 Dec;85(23):12733-41.
- Chan J, Dick RA, Vogt VM. Rous sarcoma virus gag has no specific requirement for phosphatidylinositol-(4,5)-bisphosphate for plasma membrane association in vivo or for liposome interaction in vitro.. J Virol 2011 Oct;85(20):10851-60.
- Hamard-Peron E, Muriaux D. Retroviral matrix and lipids, the intimate interaction.. Retrovirology 2011 Mar 7;8:15.
- Srb P, Vlach J, Prchal J, Grocký M, Ruml T, Lang J, Hrabal R. Oligomerization of a retroviral matrix protein is facilitated by backbone flexibility on nanosecond time scale.. J Phys Chem B 2011 Mar 24;115(11):2634-44.
- Fernandes F, Chen K, Ehrlich LS, Jin J, Chen MH, Medina GN, Symons M, Montelaro R, Donaldson J, Tjandra N, Carter CA. Phosphoinositides direct equine infectious anemia virus gag trafficking and release.. Traffic 2011 Apr;12(4):438-51.
- Fledderman EL, Fujii K, Ghanam RH, Waki K, Prevelige PE, Freed EO, Saad JS. Myristate exposure in the human immunodeficiency virus type 1 matrix protein is modulated by pH.. Biochemistry 2010 Nov 9;49(44):9551-62.
- Money VA, McPhee HK, Mosely JA, Sanderson JM, Yeo RP. Surface features of a Mononegavirales matrix protein indicate sites of membrane interaction.. Proc Natl Acad Sci U S A 2009 Mar 17;106(11):4441-6.
- Vlach J, Lipov J, Rumlová M, Veverka V, Lang J, Srb P, Knejzlík Z, Pichová I, Hunter E, Hrabal R, Ruml T. D-retrovirus morphogenetic switch driven by the targeting signal accessibility to Tctex-1 of dynein.. Proc Natl Acad Sci U S A 2008 Jul 29;105(30):10565-70.
- Chen K, Bachtiar I, Piszczek G, Bouamr F, Carter C, Tjandra N. Solution NMR characterizations of oligomerization and dynamics of equine infectious anemia virus matrix protein and its interaction with PIP2.. Biochemistry 2008 Feb 19;47(7):1928-37.
- Burkala E, Poss M. Evolution of feline immunodeficiency virus Gag proteins.. Virus Genes 2007 Oct;35(2):251-64.
- Alfadhli A, Huseby D, Kapit E, Colman D, Barklis E. Human immunodeficiency virus type 1 matrix protein assembles on membranes as a hexamer.. J Virol 2007 Feb;81(3):1472-8.
- Dalton AK, Murray PS, Murray D, Vogt VM. Biochemical characterization of rous sarcoma virus MA protein interaction with membranes.. J Virol 2005 May;79(10):6227-38.
- Chung C, Mealey RH, McGuire TC. CTL from EIAV carrier horses with diverse MHC class I alleles recognize epitope clusters in Gag matrix and capsid proteins.. Virology 2004 Sep 15;327(1):144-54.
- Scheifele LZ, Rhoads JD, Parent LJ. Specificity of plasma membrane targeting by the rous sarcoma virus gag protein.. J Virol 2003 Jan;77(1):470-80.
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