The predicted metal-binding region of the arterivirus helicase protein is involved in subgenomic mRNA synthesis, genome replication, and virion biogenesis.
Abstract: Equine arteritis virus (EAV), the prototype Arterivirus, is a positive-stranded RNA virus that expresses its replicase in the form of two large polyproteins of 1,727 and 3,175 amino acids. The functional replicase subunits (nonstructural proteins), which drive EAV genome replication and subgenomic mRNA transcription, are generated by extensive proteolytic processing. Subgenomic mRNA transcription involves an unusual discontinuous step and generates the mRNAs for structural protein expression. Previously, the phenotype of mutant EAV030F, which carries a single replicase point mutation (Ser-2429-->Pro), had implicated the nsp10 replicase subunit (51 kDa) in viral RNA synthesis, and in particular in subgenomic mRNA transcription. nsp10 contains an N-terminal (putative) metal-binding domain (MBD), located just upstream of the Ser-2429-->Pro mutation, and a helicase activity in its C-terminal part. We have now analyzed the N-terminal domain of nsp10 in considerable detail. A total of 38 mutants, most of them carrying specific single point mutations, were tested in the context of an EAV infectious cDNA clone. Variable effects on viral genome replication and subgenomic mRNA transcription were observed. In general, our results indicated that the MBD region, and in particular a set of 13 conserved Cys and His residues that are assumed to be involved in zinc binding, is essential for viral RNA synthesis. On the basis of these data and comparative sequence analyses, we postulate that the MBD may employ a rather unusual mode of zinc binding that could result in the association of up to four zinc cations with this domain. The region containing residue Ser-2429 may play the role of "hinge spacer," which connects the MBD to the rest of nsp10. Several mutations in this region specifically affected subgenomic mRNA synthesis. Furthermore, one of the MBD mutants was replication and transcription competent but did not produce infectious progeny virus. This suggests that nsp10 is involved in an as yet unidentified step of virion biogenesis.
Publication Date: 2000-05-09 PubMed ID: 10799597PubMed Central: PMC110875DOI: 10.1128/jvi.74.11.5213-5223.2000Google Scholar: Lookup
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Summary
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This research paper investigates the role of a particular region in the arterivirus helicase protein in creating a subgenomic mRNA, replicating the genome, and developing virions (virus particles) using the equine arteritis virus as its subject.
Background
- The mentioned research is focused on the Equine arteritis virus (EAV), positioned as a prototype Arterivirus. This virus carries its replicase in two large proteins of 1,727 and 3,175 amino acids.
- The functional subunits enabling EAV genome replication and subgenomic mRNA (messenger Ribonucleic Acid) transcription are a product of proteolytic processing.
- The paper acknowledges previous analysis and findings concerning EAV030F, a mutant EAV featuring a single point mutation (Ser-2429–>Pro) which emphasized the role of the nsp10 replicase subunit in viral RNA (Ribonucleic Acid) synthesis and subgenomic mRNA transcription.
Exploration of nsp10
- The researchers have conducted a detailed study of the N-terminal domain of nsp10. The domain contains an assumed metal-binding domain (MBD) upstream of the Ser-2429–>Pro mutation while its C-terminal holds helicase activity.
- A total of 38 mutants—predominantly single point mutations—were tested in coherence with an EAV infectious cDNA clone.
- A wide range of influence was observed on viral genome replication and subgenomic mRNA transcription due to these mutations.
- The results indicated the crucial role of the MBD region, specifically a group of 13 conserved cysteine and histidine residues, on viral RNA synthesis, presumed to enable zinc binding.
Role of MBD and Ser-2429 region
- The researchers have speculated that this MBD employs a unique method of zinc binding which could lead to an association of up to four zinc cations with this domain.
- The residue containing Ser-2429 region possibly acts as a ‘hinge spacer’, linking the MBD to the rest of nsp10.
- The research found that mutations in this region specifically affected subgenomic mRNA synthesis.
- Interestingly, one of their MBD mutants could replicate and transcribe but was unable to produce infectious progeny virus. This finding pointed towards the possible involvement of nsp10 in yet-to-be-identified stages of virion (actual virus particle) biogenesis.
Cite This Article
APA
van Dinten LC, van Tol H, Gorbalenya AE, Snijder EJ.
(2000).
The predicted metal-binding region of the arterivirus helicase protein is involved in subgenomic mRNA synthesis, genome replication, and virion biogenesis.
J Virol, 74(11), 5213-5223.
https://doi.org/10.1128/jvi.74.11.5213-5223.2000 Publication
Researcher Affiliations
- Department of Virology, Center for Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
MeSH Terms
- Amino Acid Sequence
- Animals
- Cell Line
- Cricetinae
- Equartevirus / enzymology
- Equartevirus / genetics
- Equartevirus / physiology
- Genetic Complementation Test
- Genome, Viral
- Metals / metabolism
- Molecular Sequence Data
- RNA Helicases / genetics
- RNA Helicases / metabolism
- RNA, Messenger / biosynthesis
- RNA, Viral / biosynthesis
- Virion / physiology
Grant Funding
- N01-CO-56000 / NCI NIH HHS
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