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Topic:Genes

Genes in horses are segments of DNA that encode the biological instructions necessary for the development, functioning, and reproduction of equine species. These genetic sequences influence a wide range of traits, including coat color, speed, endurance, and susceptibility to diseases. Genetic research in horses focuses on identifying specific genes and genetic markers associated with these traits, as well as understanding the inheritance patterns and genetic diversity within and between horse breeds. Studies in equine genetics contribute to breeding programs, disease prevention strategies, and the overall understanding of horse biology. This page compiles peer-reviewed research studies and scholarly articles that explore the identification, function, and implications of genes in equine health and performance.
Pigment types of various color genotypes of horses.
Pigment cell research    January 1, 1988   Volume 1, Issue 6 410-413 doi: 10.1111/j.1600-0749.1988.tb00144.x
Sponenberg DP, Ito S, Eng LA, Schwink K.Hair samples of various colors of horses were analyzed for content of both eumelanin and pheomelanin by a procedure using high performance liquid chromatography. The results are in accord with generally accepted genetic hypotheses accounting for the various colors. However, the results support the hypothesis that the chestnut/sorrel group of colors is conditioned by the extension locus, not the brown locus. The results also indicate that the brown locus is a likely contributor to some rare color phenotypes.
Preliminary evidence for a fourth allele at the phosphohexose isomerase (Phi) locus of horse erythrocytes.
Animal genetics    January 1, 1988   Volume 19, Issue 1 47-49 doi: 10.1111/j.1365-2052.1988.tb00788.x
Bowling AT, Wictum E.A fourth allele at the horse erythrocyte phosphohexose isomerase (Phi) locus was proposed to account for phenotypes observed after starch gel electrophoresis and enzymatic staining of red cell lysates from American Saddlebred and Tennessee Walking Horse breeds. The gene was rare, having an estimated frequency of 0.009 in 949 Saddlebreds tested.
Novel alpha haemoglobin haplotypes in horses.
Animal genetics    January 1, 1988   Volume 19, Issue 2 87-101 doi: 10.1111/j.1365-2052.1988.tb00795.x
Bowling AT, Scott AM, Flint J, Clegg JB.Four minor haplotypes that produce abnormal haemoglobin phenotypes in horses have been characterized. Two of them, AIIb and V, are copy number variants with, respectively, one and three alpha genes instead of the normal complement of two. The AIIa and C haplotypes, on the other hand, each have two alpha genes but, as a result of probable gene conversions, they now encode identical, though haplotype specific, globins. Two out of 60 unrelated and phenotypically normal horses studied had an unusual triplicated rearrangement in the embryonic zeta-gene locus. Each of these variants appears to have ...
Chromosomal localization of the major histocompatibility complex of the horse (ELA) by in situ hybridization.
Immunogenetics    January 1, 1988   Volume 28, Issue 5 362-364 doi: 10.1007/BF00364235
Ansari HA, Hediger R, Fries R, Stranzinger G.The first gene assignment to a horse chromosome is reported for equine leucocyte antigen (ELA), the major histocompatibility complex of the horse. A cloned DNA sequence derived from a class I gene of the porcine major histocompatibility complex was used as a probe for an in situ hybridization experiment. We present the regional localization of ELA, using this sequence, to equine chromosome 20q14-q22.
Standardbred stallion gene transmission for twelve protein systems: evidence for selection in trotters.
Animal genetics    January 1, 1988   Volume 19, Issue 4 317-330 doi: 10.1111/j.1365-2052.1988.tb00823.x
Weitkamp LR, MacCluer JW, Guttormsen SA, King RH.The transmission ratios of alleles at 12 protein marker loci were computed individually for American Standardbred stallions in a genealogy of 5392 phenotyped horses. Over all loci there was significant gene transmission distortion for trotting stallions (p = 0.0019) but not for pacing stallions (p = 0.99). The transmission distortion was due to sire-specific effects (p = 0.0024) and not to increased transmission of one or the other allele of a given heterozygous genotype (p = 0.21). Individual-specific, non-random transmission of homologous chromosomes may provide a mechanism for selection to ...
The A system of horse erythrocyte alloantigens: a new allele and another look at factor Ae.
Animal genetics    January 1, 1988   Volume 19, Issue 1 43-45 doi: 10.1111/j.1365-2052.1988.tb00787.x
Bowling AT, Ewalt-Evans R.Family data are presented for a new allele (Aabdg) in the A system of horse erythrocyte alloantigens which includes factors Aa and Ab traditionally thought to be products of allelic genes. Evidence for incorrect assignment of the codominant factor Ae in the presence of Ab and Ac and the absence of Aa is discussed.
Can the product of the theta gene be a real globin?
Nature    October 1, 1987   Volume 329, Issue 6138 465-466 doi: 10.1038/329465a0
Clegg JB.A new member (theta 1, or psi alpha) of the alpha-globin gene family has recently been identified in a number of species. In higher primates the theta 1 gene has all the structural features apparently necessary for expression, and it appears to have long been under strong selective constraints which suggests that it could still be, or recently have been, a functional gene. No corresponding 'globin' has yet been identified, however. In some other species, galago and rabbit for example, the theta 1 and psi alpha genes have accumulated enough inactivating mutations for them to be considered genui...
Gene conversions in the horse alpha-globin gene complex.
Molecular biology and evolution    September 1, 1987   Volume 4, Issue 5 492-503 doi: 10.1093/oxfordjournals.molbev.a040456
Clegg JB.The sequences of the linked alpha 2- and alpha 1-globin genes of the equine BI and BII haplotypes are greater than 99% identical within a 1.2-kb region extending from approximately 75 bp upstream of the putative cap site to a point approximately 150 bp 3' to the poly A addition signal. Differences between the alpha 2 and alpha 1 genes that are common to both haplotypes indicate that a major gene conversion occurred approximately 12 Myr ago and that this has been followed by shorter, more localized, conversions. Interhaplotype (allelic) comparisons at the alpha loci suggest that the BI and BII ...
Identification of the ligand-exchange process in the alkaline transition of horse heart cytochrome c.
The Biochemical journal    August 15, 1987   Volume 246, Issue 1 43-54 doi: 10.1042/bj2460043
Gadsby PM, Peterson J, Foote N, Greenwood C, Thomson AJ.Magnetic-circular-dichroism (m.c.d.) spectra over the wavelength range 300-2000 nm at room temperature and at 4.2K of horse heart cytochrome c are reported at a series of pH values between 7.8 and 11.0, encompassing the alkaline transition. The effect of glassing agents on the e.p.r. spectrum at various pH values is also reported. Comparison of these results with spectra obtained for the n-butylamine adduct of soybean leghaemoglobin support the hypothesis that lysine is the sixth ligand in the alkaline form of horse heart cytochrome c. The m.c.d. and e.p.r. spectra of horse heart cytochrome c ...
Heterogeneity and linkage of equine C4 and steroid 21-hydroxylase genes.
Journal of immunogenetics    August 1, 1987   Volume 14, Issue 4-5 247-253 doi: 10.1111/j.1744-313x.1987.tb00387.x
Kay PH, Dawkins RL, Bowling AT, Bernoco D.The fourth component of complement (C4) is polymorphic in most species studied, and is encoded by a gene or genes within the MHC. In man and mouse there are two closely linked C4 and steroid 21-hydroxylase (21-OH) genes. Therefore we have used Southern blotting to determine whether equine C4 and 21-OH genes are linked. C4 restriction fragment length polymorphism (RFLP) was found with the enzymes EcoRI and BamHI. Comparison of the sizes of EcoRI-digested fragments of genomic DNA hybridizing with C4 and 21-OH probes revealed that equine C4 and 21-OH genes are separated by no more than 13 kb. Fur...
Functional genes for cellobiose utilization in natural isolates of Escherichia coli.
Journal of bacteriology    June 1, 1987   Volume 169, Issue 6 2713-2717 doi: 10.1128/jb.169.6.2713-2717.1987
Hall BG, Faunce W.The genes for utilization of cellobiose are normally cryptic in both laboratory strains and natural isolates of Escherichia coli. A survey of natural isolates of E. coli reveals that functional genes for cellobiose utilization, while rare, are present. The fraction of E. coli that utilized cellobiose ranged from less than 0.01% in human fecal samples to 7% in fecal samples obtained from horses. Samples obtained from sheep, cows, dogs, and pigs contained 0.1 to 0.5% cellobiose-positive E. coli. Neither the previously identified cel genes nor the bgl genes from E. coli K-12 were expressed during...
Evidence that the recently discovered theta 1-globin gene is functional in higher primates.
Nature    April 16, 1987   Volume 326, Issue 6114 717-720 doi: 10.1038/326717a0
Shaw JP, Marks J, Shen CK.A new subfamily of the alpha-globin-like family has recently been identified in higher primates, rabbit, galago and possibly the horse. One member of this subfamily, theta 1, is downstream from the adult alpha 1-globin gene. In orang-utan, but not in rabbit or galago, the theta 1-gene appears to be structurally intact, suggesting that it may be functional in this species. The orang-utan theta 1-gene possesses initiation and termination codons, and the predicted polypeptide differs from the orang-utan alpha 1-globin by 55 amino acids. The upstream promoter boxes CCAAT and ATA are present, altho...
Inactivation of horse liver mitochondrial aldehyde dehydrogenase by disulfiram. Evidence that disulfiram is not an active-site-directed reagent.
The Biochemical journal    March 1, 1987   Volume 242, Issue 2 499-503 doi: 10.1042/bj2420499
Sanny CG, Weiner H.The inhibition of mitochondrial (pI 5) horse liver aldehyde dehydrogenase by disulfiram (tetraethylthiuram disulphide) was investigated to determine if the drug was an active-site-directed inhibitor. Stoichiometry of inhibition was determined by using an analogue, [35S]tetramethylthiuram disulphide. A 50% loss of the dehydrogenase activity was observed when only one site per tetrameric enzyme was modified, and complete inactivation was not obtained even after seven sites per tetramer were modified. Modification of only two sites accounted for a loss of 75% of the initial catalytic activity. Th...
Genetic diseases of connective tissues in animals.
Current problems in dermatology    January 1, 1987   Volume 17 199-215 doi: 10.1159/000413484
Minor RR, Wootton JA, Prockop DJ, Patterson DF.No abstract available
Mitochondrial DNA of the extinct quagga: relatedness and extent of postmortem change.
Journal of molecular evolution    January 1, 1987   Volume 25, Issue 4 283-287 doi: 10.1007/BF02603111
Higuchi RG, Wrischnik LA, Oakes E, George M, Tong B, Wilson AC.Sequences are reported for portions of two mitochondrial genes from a domestic horse and a plains zebra and compared to those published for a quagga and a mountain zebra. The extinct quagga and plains zebra sequences are identical at all silent sites, whereas the horse sequence differs from both of them by 11 silent substitutions. Postmortem changes in quagga DNA may account for the two coding substitutions between the quagga and plains zebra sequences. The hypothesis that the closest relative of the quagga is the domestic horse receives no support from these data. From the extent of sequence ...
Polymorphic plasma postalbumins of some domestic animals (pig PO2, horse Xk and dog Pa proteins) identified as homologous to human plasma alpha 1B-glycoprotein.
Animal genetics    January 1, 1987   Volume 18, Issue 2 119-124 doi: 10.1111/j.1365-2052.1987.tb00750.x
Juneja RK, Gahne B, Stratil A.Pig, horse and dog plasma proteins, separated by horizontal polyacrylamide gel electrophoresis (pH 9.0) and electrophoretically transferred to nitrocellulose membranes, were tested for cross-reaction with antiserum to human plasma alpha 1B-glycoprotein (alpha 1B). The results showed that one previously reported polymorphic plasma postalbumin in each of these species (pig PO2, horse Xk and dog Pa protein) was homologous to human plasma alpha 1B. In the light of the previously known genetic linkages in these species, this implied: (1) alpha 1B gene is close linked to Phi, Pgd and Hal (halothane ...
Evidence of a second polymorphic ELA class I (ELA-B) locus and gene order for three loci of the equine major histocompatibility complex.
Animal genetics    January 1, 1987   Volume 18, Issue 2 103-118 doi: 10.1111/j.1365-2052.1987.tb00749.x
Bernoco D, Byrns G, Bailey E, Lew AM.Two antisera, B-442 and R-2046, were produced by immunizing offspring with purified peripheral blood lymphocytes from a parent matched for the ELA-A specificity carried on the unshared haplotype. Absorption analysis demonstrated that these antisera contained at least two families of cytotoxic antibodies, one directed against antigens present on T and B cells, and a second directed preferentially against antigens present on surface Ig positive cells. Immunoprecipitation studies using these antisera demonstrated that both antisera contain antibodies specific for glycoproteins with molecular weig...
Molecular genetic analysis of the major histocompatibility complex in an ELA typed horse family.
Animal genetics    January 1, 1987   Volume 18, Issue 4 323-336 doi: 10.1111/j.1365-2052.1987.tb00776.x
Guerin G, Bertaud M, Chardon P, Geffrotin C, Vaiman M, Cohen D.Restriction fragment length polymorphism was studied in an ELA typed horse family which included a stallion, a mare with two full-sibs, another mare with three full-sibs and, in addition, three paternal half-sibs. DNA samples from all individuals were investigated by Southern blot analysis using three restriction enzymes (EcoRI, HindIII or TaqI) and human cDNA class I, class II (DR beta) and class III (C4) probes. In addition, a genomic class II DQ alpha probe was used. Fragments hybridized with the various probes revealed the existence of DNA sequences homologous to HLA class I, DR beta, DQ a...
Multiple overlapping epitopes in the three antigenic regions of horse cytochrome c1.
Journal of immunology (Baltimore, Md. : 1950)    January 1, 1987   Volume 138, Issue 1 213-219 
Jemmerson R.To gain a better understanding of the diversity of epitopes on a protein, the specificities of 103 monoclonal antibodies to a model antigen, horse cytochrome c(cyt c), were analyzed. The antibodies were generated in in vitro monoclonal, secondary antibody responses against horse cyt c coupled to hemocyanin in splenic fragment cultures. For this assay, horse cyt c-primed murine B lymphocytes were transferred to irradiated, hemocyanin-primed recipients. A panel of seven mammalian cyts c differing at one to six residues out of 104 and cyanogen bromide-cleaved fragments of horse cyt c containing r...
Nucleotide and deduced amino acid sequence of the influenza neuraminidase genes of two equine serotypes.
Virology    December 1, 1986   Volume 155, Issue 2 460-468 doi: 10.1016/0042-6822(86)90207-2
Dale B, Brown R, Miller J, White RT, Air GM, Cordell B.Equine influenza is caused by two serotypes of type A influenza virus, EIV-A1 and EIV-A2. The complete nucleotide sequence of the neuraminidase (NA) genes of both the A1 (N7 subtype) and A2 (N8 subtype) serotype has been determined following cloning of full-length viral NA cDNAs into pBR322. Analysis of the deduced amino acid sequences reveals that the N7 and N8 genes share expected extensive homologies with the previously sequenced N1, N2, and N9 NA subtypes. These homologies include conservation of basic NA gene and protein structure, cysteine residues, potential glycosylation sites, and res...
Lentivirus genomic organization: the complete nucleotide sequence of the env gene region of equine infectious anemia virus.
Virology    December 1, 1986   Volume 155, Issue 2 309-321 doi: 10.1016/0042-6822(86)90195-9
Rushlow K, Olsen K, Stiegler G, Payne SL, Montelaro RC, Issel CJ.The nucleotide sequence of the envelope (env) gene region of equine infectious anemia virus (EIAV), a member of the lentivirus subfamily of retroviruses, has been determined from a clone of integrated proviral DNA for which the gag and pol sequences have been reported previously. The env gene is 859 codons in length and the sequence reported here is consistent with the published biochemical properties of EIAV glycoproteins. The env gene region of EIAV shares considerable structural similarities but negligible sequence homologies with the env genes of other members of the lentivirus subfamily, ...
Molecular cloning and expression in Escherichia coli of equine type I interferons.
DNA (Mary Ann Liebert, Inc.)    October 1, 1986   Volume 5, Issue 5 345-356 doi: 10.1089/dna.1986.5.345
Himmler A, Hauptmann R, Adolf GR, Swetly P.Using human interferon-alpha 2 (IFN-alpha 2) and IFN-beta DNA to probe an equine genomic library we isolated recombinant phages containing genes for equine interferon-alpha (EqIFN-alpha), interferon-beta (EqIFN-beta), and interferon-omega (EqIFN-omega). Sequence and hybridization analyses of these genes reveal that the equine genome contains gene families of each of these three type I interferon classes. The mature proteins of EqIFN-alpha are 71-77% homologous to human IFN-alpha polypeptides, and, when expressed in E. coli, possess antiviral activity on both equine and human cells. By contrast...
Cloning and characterization of an equine cutaneous papillomavirus.
Virology    July 15, 1986   Volume 152, Issue 1 100-109 doi: 10.1016/0042-6822(86)90375-2
O'Banion MK, Reichmann ME, Sundberg JP.Equine papillomaviruses (EqPV) from naturally occurring cases of cutaneous papillomatosis in several ponies and one horse were isolated, cloned, and characterized. Group specific papillomavirus structural antigens were detected in sections of the papillomas by the peroxidase-antiperoxidase technique, and virions were observed in the in the nuclei of cells in the stratum granulosum and corneum. Negatively stained virions purified from papilloma homogenates by isopycnic CsCl centrifugation were 55 nm in diameter and had typical papillomavirus morphology. The entire viral genomes of two separate ...
The gene encoding the equine soluble class I molecule is linked to the horse MHC.
Immunogenetics    January 1, 1986   Volume 24, Issue 2 128-130 doi: 10.1007/BF00373122
Lew AM, Bailey E, Valas RB, Coligan J.No abstract available
Genetic linkage between loci for a red cell alloantigen (U) and serum protease inhibitor (Pi) in the horse.
Animal genetics    January 1, 1986   Volume 17, Issue 3 217-223 doi: 10.1111/j.1365-2052.1986.tb03193.x
Bowling AT.Preliminary evidence for the fifth autosomal linkage group in the horse, comprised of the loci for a red cell alloantigen (U) and serum protease inhibitor (Pi), was demonstrated by means of paternal half-sib groups in thoroughbred, standardbred and Arabian breeds. Recombination frequency in males was estimated to be 0.125 +/- 0.019.
Segregation distortion within the equine MHC; analogy to a mouse T/t-complex trait.
Immunogenetics    January 1, 1986   Volume 24, Issue 4 225-229 doi: 10.1007/BF00364526
Bailey E.Segregation distortion was found for a haplotype of the equine lymphocyte antigen (ELA) system in an extended family of American Standardbred horses. In one sire family, consisting of a stallion and his 17 sons and grandsons, the gene for ELA-A10 (A10) was transmitted to 57.7% of 638 offspring scored (P = 0.001). Significant segregation distortion was not seen for mares or for unrelated stallions, regardless of the ELA markers they possessed. Since the effect was seen for this one sire family and not seen for other stallions with A10, it is unlikely that the gene for A10 is the cause of this p...
XY sex-reversal syndrome in the domestic horse.
Cytogenetics and cell genetics    January 1, 1986   Volume 42, Issue 1-2 8-18 doi: 10.1159/000132243
Kent MG, Shoffner RN, Buoen L, Weber AF.The XY sex-reversal syndrome occurs when a phenotypic mare is born that has the karyotype of a stallion. The syndrome is manifested by both genotypic and phenotypic heterogeneity. The sex-reversed genetic condition occurs frequently within certain pedigrees where XY females have been found and can be readily detected by chromosome karyotyping. The phenotypic spectrum ranges from the feminine mare with a reproductive tract that is within normal limits to the greatly masculinized mare. Pedigree analysis suggests that there are two modes of inheritance: (1) an X-linked recessive or autosomal sex-...
Inhibition of lipases by proteins. A kinetic study with dicaprin monolayers.
The Journal of biological chemistry    February 25, 1985   Volume 260, Issue 4 2268-2273 
Gargouri Y, Pieroni G, Rivière C, Sugihara A, Sarda L, Verger R.We report further investigations on protein inhibition of pancreatic and microbial lipases carried out with the monolayer technique. When beta-lactoglobulin A, melittin, serum albumin, myoglobin, and a protein inhibiting lipase from soybean were preincubated with a dicaprin film at a surface pressure of 35 dynes/cm, no activity was detected with horse pancreatic or Rhizopus delemar lipases. By contrast, Rhizopus arrhizus and Geotrichum candidum lipase activities were not impaired under the same conditions. Experiments using mixed lipid-protein film transfer clearly show that the inhibition of ...
Genetic linkage relationships of equine plasminogen (PLG) with 23 loci.
Animal blood groups and biochemical genetics    January 1, 1985   Volume 16, Issue 1 61-63 doi: 10.1111/j.1365-2052.1985.tb01452.x
Weitkamp LR, Bailey E.No abstract available
Blood group and protein polymorphism gene frequencies for seven breeds of horses in the United States.
Animal blood groups and biochemical genetics    January 1, 1985   Volume 16, Issue 2 93-108 doi: 10.1111/j.1365-2052.1985.tb01458.x
Trommershausen Bowling A, Clark RS.Gene frequencies at 20 blood group and protein polymorphism loci (A, C, D, K, P, Q, U, Al, Tf, Pi, Xk, Es, Gc, PGD, CA, Cat, PGM, AP, Hb and PHI) are given for seven horse breeds in the United States (Thoroughbred, Arabian, Standardbred, Morgan, Quarter Horse, Paso Fino and Peruvian Paso). These data are used to calculate that the battery of tests is at least 96% effective for recognizing incorrect paternity in these breeds. In addition to paternity testing, these tests can be applied to studies of breed relationships.