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Evaluation of a PCR to detect Salmonella in fecal samples of horses admitted to a veterinary teaching hospital.

Abstract: The diagnostic accuracy of a PCR used to identify horses shedding Salmonella spp. in their feces during hospitalization was estimated, relative to bacterial culture of serially collected fecal samples, using longitudinal data. Five or more fecal samples were collected from each of 116 horses admitted as inpatients, for reasons other than gastrointestinal disease, between July 26, 2001 and October 25, 2002. All 873 fecal samples collected were tested with a PCR based on oligonucleotide primers defining a highly conserved segment of the histidine transport operon gene of Salmonella typhimurium, and each sample was cultured for Salmonella spp. One or more samples from 87 (75%) horses were PCR positive, and Salmonella was cultured from 1 or more samples from 11 (9.5%) horses. All culture-positive horses had at least 1 PCR-positive result, whereas only 29 (28%) culture-negative horses were PCR negative on all fecal samples tested. The PCR was most specific, relative to bacterial culture of serially collected fecal samples, when used to test samples from Quarterhorse or breeds other than Thoroughbred or Standardbred, or from clinical (vs. healthy, accompanying horses) cases. Overall, the PCR had the greatest agreement (70%), compared with bacterial culture of serially collected fecal samples, using a cutoff of 2 or more positive PCR test results to define a Salmonella-positive horse. The reasons why some fecal samples, from which Salmonella organisms cannot be isolated, are PCR positive need to be determined before the PCR can be incorporated into Salmonella surveillance programs for hospitalized equine populations.
Publication Date: 2005-04-14 PubMed ID: 15825491DOI: 10.1177/104063870501700204Google Scholar: Lookup
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  • Evaluation Study
  • Journal Article

Summary

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This research is about the evaluation of a PCR test for detecting Salmonella in horses’ feces, specifically in comparison to traditional bacterial culture methods. The study ultimately found that the PCR test showed significant agreement with the bacterial culture method, but further research is needed for it to become a standard part of Salmonella surveillance for hospitalized horses.

Objectives of the Research

  • The major objective of the study was to evaluate the accuracy of a polymerase chain reaction (PCR) test for identifying horses shedding Salmonella in their feces during hospitalization. The researchers compared the PCR test with bacterial culture methods.
  • Another aim was to determine if the PCR method could be incorporated into Salmonella surveillance programs for hospitalized equine populations, thereby improving the detection and control of the bacteria in these settings.

Methodology

  • The researchers collected five or more fecal samples from each of 116 horses that were admitted as inpatients to a veterinary hospital for reasons other than gastrointestinal disease.
  • All 873 fecal samples collected were then tested with a PCR method that focused on a highly conserved segment of the histidine transport operon gene of Salmonella typhimurium. Each sample was also cultured for Salmonella for comparison purposes.

Results

  • One or more samples from 87 (75%) horses were PCR positive, whereas Salmonella was cultured from one or more samples from 11 (9.5%) horses.
  • All culture-positive horses had at least one PCR-positive result, implying that the PCR test had a high specificity when compared to the bacterial culture methods.
  • However, only 29 (28%) culture-negative horses were PCR negative on all fecal samples tested, indicating a potential for false positives in the PCR test.
  • The researchers found the greatest agreement (70%) between PCR and bacterial culture methods when they defined a Salmonella-positive horse as one that had two or more positive PCR test results.

Conclusion

  • Though the PCR test proved useful in detecting Salmonella in horse feces, the researchers suggest that more research is needed to understand why some fecal samples, from which Salmonella organisms cannot be isolated, are PCR positive. This further exploration is necessary before incorporating the PCR test into Salmanella surveillance programs for hospitalized equines.

Cite This Article

APA
Ward MP, Alinovi CA, Couëtil LL, Wu CC. (2005). Evaluation of a PCR to detect Salmonella in fecal samples of horses admitted to a veterinary teaching hospital. J Vet Diagn Invest, 17(2), 118-123. https://doi.org/10.1177/104063870501700204

Publication

ISSN: 1040-6387
NlmUniqueID: 9011490
Country: United States
Language: English
Volume: 17
Issue: 2
Pages: 118-123

Researcher Affiliations

Ward, Michael P
  • Department of Veterinary Pathobiology, School of Veterinary Medicine, Purdue University, West Lafayette, IN 47907-2027, USA.
Alinovi, Catherine A
    Couëtil, Laurent L
      Wu, Ching Ching

        MeSH Terms

        • Animals
        • DNA, Bacterial / analysis
        • Feces / microbiology
        • Female
        • Horse Diseases / diagnosis
        • Horse Diseases / microbiology
        • Horses
        • Hospitals, Animal
        • Male
        • Polymerase Chain Reaction / veterinary
        • ROC Curve
        • Salmonella / genetics
        • Salmonella / isolation & purification
        • Salmonella / pathogenicity
        • Salmonella Infections, Animal / diagnosis
        • Salmonella Infections, Animal / microbiology
        • Sensitivity and Specificity

        Citations

        This article has been cited 5 times.
        1. Amory H, Cesarini C, De Maré L, Loublier C, Moula N, Detilleux J, Saulmont M, Garigliany MM, Lecoq L. Relationship between the Cycle Threshold Value (Ct) of a Salmonella spp. qPCR Performed on Feces and Clinical Signs and Outcome in Horses. Microorganisms 2023 Jul 30;11(8).
        2. Goni JI, Hendrix K, Kritchevsky J. Recovery of Salmonella bacterial isolates from pooled fecal samples from horses. J Vet Intern Med 2023 Jan;37(1):323-327.
          doi: 10.1111/jvim.16586pubmed: 36433697google scholar: lookup
        3. Sanz MG, Kwon S, Pusterla N, Gold JR, Bain F, Evermann J. Evaluation of equine coronavirus fecal shedding among hospitalized horses. J Vet Intern Med 2019 Mar;33(2):918-922.
          doi: 10.1111/jvim.15449pubmed: 30788861google scholar: lookup
        4. Basiouni S, Rodriguez-Morales AJ, Shehata AA, Duarte PM. Silent Carriers: The Role of Rodents in the Emergence of Zoonotic Bacterial Threats. Pathogens 2025 Sep 15;14(9).
          doi: 10.3390/pathogens14090928pubmed: 41011829google scholar: lookup
        5. Tyrnenopoulou P, Tsilipounidaki K, Florou Z, Gkountinoudis CG, Tyropoli K, Starras A, Peleki C, Marneris D, Arseniou N, Lianou DT, Katsarou EI, Petinaki E, Fthenakis GC. Detection of Gastrointestinal Pathogens with Zoonotic Potential in Horses Used in Free-Riding Activities during a Countrywide Study in Greece. Animals (Basel) 2024 Sep 3;14(17).
          doi: 10.3390/ani14172566pubmed: 39272351google scholar: lookup