Analyze Diet
Veterinary and animal science2026; 33; 100713; doi: 10.1016/j.vas.2026.100713

Evaluation of two point-of-care molecular diagnostic platforms for rapid detection of equine Hendra virus.

Abstract: Hendra virus (HeV) is a lethal zoonotic pathogen endemic to eastern Australia, posing significant risks to equine and human health. Rapid field detection of HeV enables timely intervention and outbreak management. This study evaluated candidate point-of-care (POC) molecular diagnostic platforms for HeV detection in equine samples: including a loop-mediated isothermal amplification (DARQ RT-LAMP) assay and real-time reverse transcription quantitative polymerase chain reaction (RT-qPCR). Comparative analytical evaluation demonstrated that RT-qPCR exhibited superior analytical sensitivity relative to DARQ RT-LAMP, with a limit of detection of 1 copy/µL compared with 1,000 copies/µL, respectively. On this basis, DARQ RT-LAMP was not progressed beyond initial analytical evaluation due to insufficient sensitivity for the intended application. Bayesian Latent Class Model (BLCM) analysis estimated diagnostic sensitivity of 63.1% (95%PI 48.8-76.1%) and 80.4% (95%PI 67.6-90.2%) for RT-qPCR with HUDSON-prepared samples and extracted RNA, respectively, with identical specificity of 96.5% (95%PI 85.9-99.9%) for both sample types in virus transport medium. In 10% EDTA blood, diagnostic sensitivity was 71.3% (95%PI 54.2-85.1%) and 88.3% (95%PI 74.2-97.3%), respectively, with comparable specificity. Preliminary assessment of repeatability and reproducibility was promising (CVs <10%), although further field studies are required. These findings demonstrate that RT-qPCR, combined with rapid HUDSON sample preparation, provides a feasible molecular POC approach for preliminary rule-in or exclusion of HeV infection in horses while confirmatory laboratory testing is pending, supporting early risk management and reduced occupational exposure.
Publication Date: 2026-05-30 PubMed ID: 42291516PubMed Central: PMC13253132DOI: 10.1016/j.vas.2026.100713Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Journal Article

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

Research Summary

  • This study evaluated two rapid molecular diagnostic tests designed for use at the point of care (POC) to detect Hendra virus (HeV) infection in horses.
  • They compared a loop-mediated isothermal amplification assay (DARQ RT-LAMP) and a real-time reverse transcription quantitative PCR assay (RT-qPCR), assessing sensitivity, specificity, and feasibility for field application.

Background

  • Hendra virus (HeV) is a deadly virus native to eastern Australia that can infect horses and humans, posing significant health risks.
  • Rapid detection of HeV in horses is critical to initiate timely interventions and control potential outbreaks.
  • Point-of-care (POC) diagnostics are tests that can be performed quickly at the location of the animal without the need to send samples to specialized labs.

Diagnostic Platforms Evaluated

  • DARQ RT-LAMP Assay: A loop-mediated isothermal amplification method designed for rapid amplification of viral RNA without the need for thermal cycling.
  • RT-qPCR: A real-time reverse transcription quantitative polymerase chain reaction which is the gold standard molecular test for detecting viral RNA with high sensitivity.

Analytical Sensitivity Comparison

  • RT-qPCR Sensitivity: Could detect as few as 1 viral RNA copy per microliter, reflecting very high sensitivity.
  • DARQ RT-LAMP Sensitivity: Detected down to 1,000 copies per microliter, substantially less sensitive than RT-qPCR.
  • Due to insufficient sensitivity, the DARQ RT-LAMP platform was not advanced beyond initial testing phases.

Diagnostic Performance in Different Sample Types

  • Bayesian Latent Class Model (BLCM) Analysis: Used to estimate diagnostic sensitivity and specificity without relying on a perfect reference standard.
  • RT-qPCR with HUDSON Sample Prep (rapid preparation method):
    • Diagnostic sensitivity was estimated at 63.1% (with 95% probability interval 48.8-76.1%) using virus transport medium samples.
    • Specificity was very high at 96.5% (95% PI 85.9-99.9%).
  • RT-qPCR with Extracted RNA:
    • Higher diagnostic sensitivity of 80.4% (95% PI 67.6-90.2%) was observed.
    • Specificity remained at 96.5% (95% PI 85.9-99.9%).
  • 10% EDTA Blood Samples:
    • Sensitivity with HUDSON prep: 71.3% (95% PI 54.2-85.1%).
    • Sensitivity with extracted RNA: 88.3% (95% PI 74.2-97.3%).
    • Specificity was comparable to virus transport medium samples.

Repeatability and Reproducibility

  • Preliminary evaluation of test consistency showed coefficient of variation values under 10%, indicating good repeatability and reproducibility.
  • However, further field studies are necessary to confirm these findings in real-world conditions.

Implications and Conclusions

  • The RT-qPCR combined with rapid HUDSON sample preparation is a practical POC diagnostic approach to quickly rule in or exclude Hendra virus infection in horses.
  • This approach supports timely decision making and outbreak management by enabling preliminary diagnosis while awaiting confirmatory laboratory testing.
  • Early detection via POC testing can reduce occupational exposure risk to humans and enhance horse health management in Hendra virus endemic regions.
  • The DARQ RT-LAMP assay’s lower sensitivity limits its usefulness for this specific application.

Cite This Article

APA
Hulse L, Izzard L, Nagendrakumar SB, Colling A, Underwood D, Driver L, Williams DT, Ahern B. (2026). Evaluation of two point-of-care molecular diagnostic platforms for rapid detection of equine Hendra virus. Vet Anim Sci, 33, 100713. https://doi.org/10.1016/j.vas.2026.100713

Publication

ISSN: 2451-943X
NlmUniqueID: 101694897
Country: Netherlands
Language: English
Volume: 33
Pages: 100713
PII: 100713

Researcher Affiliations

Hulse, Lyndal
  • School of Veterinary Science, The University of Queensland, Gatton QLD 4343, Australia.
Izzard, Leonard
  • CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
Nagendrakumar, Singanallur Balasubramanian
  • CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
  • World Organization for Animal Health Collaborating Centre for Diagnostic Test Validation Science in the Asia-Pacific Region, CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
Colling, Axel
  • CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
  • World Organization for Animal Health Collaborating Centre for Diagnostic Test Validation Science in the Asia-Pacific Region, CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
Underwood, Darren
  • Biosecurity Sciences Laboratory, Department of Primary Industries, Coopers Plains, QLD 4108, Australia.
Driver, Luke
  • Biosecurity Sciences Laboratory, Department of Primary Industries, Coopers Plains, QLD 4108, Australia.
Williams, David T
  • CSIRO, Australian Centre for Disease Preparedness, Geelong VIC 3220, Australia.
Ahern, Benjamin
  • School of Veterinary Science, The University of Queensland, Gatton QLD 4343, Australia.

Conflict of Interest Statement

The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Dr Lyndal Hulse reports financial support was provided by AgriFutures. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

References

This article includes 33 references
  1. Annand EJ. Novel Hendra virus variant detected by sentinel surveillance of Australian horses. .
    doi: 10.1101/2021.07.16.452724pmc: PMC8888208pubmed: 35202527google scholar: lookup
  2. Balkema-Buschmann A. Serological hendra virus diagnostics using an indirect ELISA-Based DIVA Approach with recombinant hendra G and N proteins. Microorganisms 2022;10(6):1095.
  3. Barnes KG. Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time. Nature Communications 2020;11(1):4131.
    doi: 10.1038/s41467-020-17994-9pmc: PMC7431545pubmed: 32807807google scholar: lookup
  4. Branscum AJ, Gardner IA, Johnson WO. Estimation of diagnostic-test sensitivity and specificity through Bayesian modeling. Preventive Veterinary Medicine 2005;68(2–4):145–163.
  5. Cawthraw S, Saunders GC, Martin TC, Sawyer J, Windl O, Reaney SD. Real-time PCR detection and identification of prohibited mammalian and avian material in animal feeds. Journal Of Food Protection 2009;72(5):1055–1062.
    doi: 10.4315/0362-028x-72.5.1055pubmed: 19517734google scholar: lookup
  6. Cheung A. Bayesian latent class analysis when the reference test is imperfect. Revue Scientifique Et Technique (International Office of Epizootics) 2021;40(1):271–286.
    doi: 10.20506/rst.40.1.3224pubmed: 34140724google scholar: lookup
  7. Daniels P, Ksiazek T, Eaton B. Laboratory diagnosis of Nipahand Hendra virus infections. Microbes And Infection 2001;3(3):289–295.
    pubmed: 11334746
  8. Dendukuri N, Joseph L. Bayesian approaches to modeling the conditional dependence between multiple diagnostic tests. Biometrics 2001;57(1):158–167.
    pubmed: 11252592
  9. Denis-Robichaud J. Validity of luminometry and bacteriological tests for diagnosing intramammary infection at dry-off in dairy cows. Journal Of Dairy Science 2024;107(9):7221–7229.
    doi: 10.3168/jds.2024-24693pubmed: 38788849google scholar: lookup
  10. . Validation template for nucleic acid detection (NAD). .
  11. Feldman KS. Design and evaluation of consensus PCR assays for henipaviruses. Journal OF Virological Methods 2009;161(1):52–57.
  12. Foord AJ, Middleton D, Heine HG. Hendra virus detection using Loop-Mediated Isothermal Amplification. Journal Of Virological Methods 2012;181(1):93–96.
  13. Halpin K. Pteropid bats are confirmed as the reservoir hosts of henipaviruses: A comprehensive experimental study of virus transmission. The American Journal Of Tropical Medicine And Hygiene 2011;85(5):946–951.
    doi: 10.4269/ajtmh.2011.10-0567pmc: PMC3205647pubmed: 22049055google scholar: lookup
  14. Lunn D, Spiegelhalter D, Thomas A, Best N. The BUGS project: Evolution, critique and future directions. Statistics In Medicine 2009;28(25):3049–3067.
    doi: 10.1002/sim.3680pubmed: 19630097google scholar: lookup
  15. Lurier T. Evaluation using latent class models of the diagnostic performances of three ELISA tests commercialized for the serological diagnosis of Coxiella burnetii infection in domestic ruminants. Veterinary Research 2021;52(1):56.
    doi: 10.1186/s13567-021-00926-wpmc: PMC8048088pubmed: 33853678google scholar: lookup
  16. Marsh G. Recombinant Hendra viruses expressing a reporter gene retain pathogenicity in ferrets. Virology Journal 2013;10(1):95.
    pmc: PMC3724489pubmed: 23521919
  17. McNabb L. Development and validation of a differentiating infected from vaccinated animals (DIVA) enzyme-linked immunosorbent assay (ELISA) strategy for distinguishing between hendra-infected and vaccinated horses. Viruses 2025;17(3):354.
    doi: 10.3390/v17030354pmc: PMC11945769pubmed: 40143282google scholar: lookup
  18. Middleton D. Hendra virus. The Veterinary Clinics Of North America Equine practice 2014;30(3):579–589.
    doi: 10.1016/j.cveq.2014.08.004pmc: PMC4252762pubmed: 25281398google scholar: lookup
  19. Moehling TJ, Choi G, Dugan LC, Salit M, Meagher RJ. LAMP diagnostics at the point-of-care: Emerging trends and perspectives for the developer community. Expert Review Of Molecular Diagnostics 2021;21(1):43–61.
    doi: 10.1080/14737159.2021.1873769pubmed: 33474990google scholar: lookup
  20. Myhrvold C. Field-deployable viral diagnosticsusing CRISPR-Cas13. Science (New York, N.Y.) 2018;360(6387):444–448.
    pmc: PMC6197056pubmed: 29700266
  21. Nanayakkara IA, White IM. Demonstration of a quantitative triplex LAMP assay with an improved probe-based readout for the detection of MRSA. The Analyst 2019;144(12):3878–3885.
    doi: 10.1039/c9an00671kpubmed: 31114822google scholar: lookup
  22. Peel AJ. Novel hendra virus variant circulating in black flying foxes and grey-headed flying foxes, Australia. Emerging Infectious Diseases 2022;28(5):1043–1047.
    doi: 10.3201/eid2805.212338pmc: PMC9045453pubmed: 35447052google scholar: lookup
  23. Pollak NM, Marsh GA, Olsson M, McMillan D, Macdonald J. Rapid, sensitive, and specific, low-resource molecular detection of Hendra virus. One Health (Amsterdam, Netherlands) 2023;16.
  24. Smith IL, Halpin K, Warrilow D, Smith GA. Development of a fluorogenic RT-PCR assay (TaqMan) for the detection of Hendra virus. Journal Of Virological Methods 2001;98(1):33–40.
    doi: 10.1016/s0166-0934(01)00354-8pubmed: 11543882google scholar: lookup
  25. Swets J. Measuring the Accuracy of Diagnostic Systems. Science (American Association for the Advancement of Science) 1988;240(4857):1285–1293.
    pubmed: 3287615
  26. Tanner NA, Zhang Y, Evans TC Jr. Simultaneous multiple target detection in real-time loop-mediated isothermal amplification. BioTechniques 2012;53(2):81–89.
    doi: 10.2144/0000113902pubmed: 23030060google scholar: lookup
  27. Taylor J. Novel variant Hendra virus genotype 2 infection in a horse in the greater Newcastle region, New South Wales, Australia. One Health (Amsterdam, Netherlands) 2022;15.
  28. Vats D, Knudson C. Revisiting the Gelman–Rubin Diagnostic. Statistical Science 2021;36(4):518–529.
    doi: 10.1214/20-STS812google scholar: lookup
  29. Wang J. A new Hendra virus genotype found in Australian flying foxes. Virology Journal 2021;18(1):197.
    doi: 10.1186/s12985-021-01652-7pmc: PMC8510678pubmed: 34641882google scholar: lookup
  30. World Organisation for Animal Health WOAH. Nipah and Hendra virus diseases. Manual of Diagnostic Tests and Vaccines for Terrestrial Animals 2023. Vol. 1, Chapter 3.1.16.
  31. World Organisation for Animal Health WOAH. Validation of diagnostic assays for infectious diseases of terrestrial animals. Manual of Diagnostic Tests and Vaccines for Terrestrial Animals 2023. Chapter 1.1.6.
  32. Young JR, Selvey CE, Symons R. Hendra virus. The Medical Journal of Australia 2011;195(5):250–251.
    doi: 10.5694/mja11.10967pubmed: 21895580google scholar: lookup
  33. Zhao Y, Chen F, Li Q, Wang L, Fan C. Isothermal Amplification of Nucleic Acids. Chemical Reviews 2015;115(22):12491–12545.
    doi: 10.1021/acs.chemrev.5b00428pubmed: 26551336google scholar: lookup

Citations

This article has been cited 0 times.