Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era.

1. Achilli A, Olivieri A, Soares P, Lancioni H, Hooshiar Kashani B, Perego UA, Nergadze SG, Carossa V, Santagostino M, Capomaccio S, Felicetti M, Al-Achkar W, Penedo MC, Verini-Supplizi A, Houshmand M, Woodward SR, Semino O, Silvestrelli M, Giulotto E, Pereira L, Bandelt HJ, Torroni A. Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication.. Proc Natl Acad Sci U S A 2012 Feb 14;109(7):2449-54.
   pmc: PMC3289334pubmed: 22308342doi: 10.1073/pnas.1111637109google scholar: lookup
2. Alberi C, Hisey E, Lassaline M, Atilano A, Kalbfleisch T, Stoppini R, Hermans H, Back W, Mienaltowski MJ, Bellone RR. Ruling out BGN variants as simple X-linked causative mutations for bilateral corneal stromal loss in Friesian horses.. Anim Genet 2018 Dec;49(6):656-657.
   pubmed: 30246344doi: 10.1111/age.12726google scholar: lookup
3. Almarzook S, Reissmann M, Arends D, Brockmann GA. Genetic diversity of Syrian Arabian horses.. Anim Genet 2017 Aug;48(4):486-489.
   pubmed: 28568646doi: 10.1111/age.12568google scholar: lookup
4. Andersson LS, Larhammar M, Memic F, Wootz H, Schwochow D, Rubin CJ, Patra K, Arnason T, Wellbring L, Hjälm G, Imsland F, Petersen JL, McCue ME, Mickelson JR, Cothran G, Ahituv N, Roepstorff L, Mikko S, Vallstedt A, Lindgren G, Andersson L, Kullander K. Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice.. Nature 2012 Aug 30;488(7413):642-6.
   pmc: PMC3523687pubmed: 22932389doi: 10.1038/nature11399google scholar: lookup
5. Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.. Genome Biol 2015 Mar 25;16(1):57.
   pmc: PMC4373242pubmed: 25854118doi: 10.1186/s13059-015-0622-4google scholar: lookup
6. Árnason T. Genetic evaluation of Swedish standard‐bred trotters for racing performance traits and racing status. Journal of Animal Breeding and Genetics 116, 387–98.
7. Avila F, Mickelson JR, Schaefer RJ, McCue ME. Genome-Wide Signatures of Selection Reveal Genes Associated With Performance in American Quarter Horse Subpopulations.. Front Genet 2018;9:249.
   pmc: PMC6060370pubmed: 30105047doi: 10.3389/fgene.2018.00249google scholar: lookup
8. Bailey E. & Brooks S.A. (2013) Horse Genetics, 2nd edn CABI, Oxford.
9. Bailey SR, Habershon-Butcher JL, Ransom KJ, Elliott J, Menzies-Gow NJ. Hypertension and insulin resistance in a mixed-breed population of ponies predisposed to laminitis.. Am J Vet Res 2008 Jan;69(1):122-9.
   pubmed: 18167097doi: 10.2460/ajvr.69.1.122google scholar: lookup
10. Balmer P, Bauer A, Pujar S, McGarvey KM, Welle M, Galichet A, Müller EJ, Pruitt KD, Leeb T, Jagannathan V. A curated catalog of canine and equine keratin genes.. PLoS One 2017;12(8):e0180359.
    pmc: PMC5573215pubmed: 28846680doi: 10.1371/journal.pone.0180359google scholar: lookup
11. Bamford NJ, Potter SJ, Harris PA, Bailey SR. Breed differences in insulin sensitivity and insulinemic responses to oral glucose in horses and ponies of moderate body condition score.. Domest Anim Endocrinol 2014 Apr;47:101-7.
    pubmed: 24308928doi: 10.1016/j.domaniend.2013.11.001google scholar: lookup
12. de Barros Damgaard P, Martiniano R, Kamm J, Moreno-Mayar JV, Kroonen G, Peyrot M, Barjamovic G, Rasmussen S, Zacho C, Baimukhanov N, Zaibert V, Merz V, Biddanda A, Merz I, Loman V, Evdokimov V, Usmanova E, Hemphill B, Seguin-Orlando A, Yediay FE, Ullah I, Sjögren KG, Iversen KH, Choin J, de la Fuente C, Ilardo M, Schroeder H, Moiseyev V, Gromov A, Polyakov A, Omura S, Senyurt SY, Ahmad H, McKenzie C, Margaryan A, Hameed A, Samad A, Gul N, Khokhar MH, Goriunova OI, Bazaliiskii VI, Novembre J, Weber AW, Orlando L, Allentoft ME, Nielsen R, Kristiansen K, Sikora M, Outram AK, Durbin R, Willerslev E. The first horse herders and the impact of early Bronze Age steppe expansions into Asia.. Science 2018 Jun 29;360(6396).
    doi: 10.1126/science.aar7711pmc: PMC6748862pubmed: 29743352google scholar: lookup
13. Bauer A, Hiemesch T, Jagannathan V, Neuditschko M, Bachmann I, Rieder S, Mikko S, Penedo MC, Tarasova N, Vitková M, Sirtori N, Roccabianca P, Leeb T, Welle MM. A Nonsense Variant in the ST14 Gene in Akhal-Teke Horses with Naked Foal Syndrome.. G3 (Bethesda) 2017 Apr 3;7(4):1315-1321.
    pmc: PMC5386879pubmed: 28235824doi: 10.1534/g3.117.039511google scholar: lookup
14. Beeson SK, Schaefer RJ, Mason VC, McCue ME. Robust remapping of equine SNP array coordinates to Eq쪳.. Anim Genet 2019 Feb;50(1):114-115.
    pmc: PMC6349531pubmed: 30421446doi: 10.1111/age.12745google scholar: lookup
15. Belknap JK, Giguère S, Pettigrew A, Cochran AM, Van Eps AW, Pollitt CC. Lamellar pro-inflammatory cytokine expression patterns in laminitis at the developmental stage and at the onset of lameness: innate vs. adaptive immune response.. Equine Vet J 2007 Jan;39(1):42-7.
    pubmed: 17228594doi: 10.2746/042516407x155406google scholar: lookup
16. Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, Archer S, Sandmeyer L, Ludwig A, Foerster D, Pruvost M, Reissmann M, Bortfeldt R, Adelson DL, Lim SL, Nelson J, Haase B, Engensteiner M, Leeb T, Forsyth G, Mienaltowski MJ, Mahadevan P, Hofreiter M, Paijmans JL, Gonzalez-Fortes G, Grahn B, Brooks SA. Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse.. PLoS One 2013;8(10):e78280.
    pmc: PMC3805535pubmed: 24167615doi: 10.1371/journal.pone.0078280google scholar: lookup
17. Bellone RR, Liu J, Petersen JL, Mack M, Singer-Berk M, Drögemüller C, Malvick J, Wallner B, Brem G, Penedo MC, Lassaline M. A missense mutation in damage-specific DNA binding protein 2 is a genetic risk factor for limbal squamous cell carcinoma in horses.. Int J Cancer 2017 Jul 15;141(2):342-353.
    pubmed: 28425625doi: 10.1002/ijc.30744google scholar: lookup
18. Meira CT, Curi RA, Farah MM, de Oliveira HN, Béltran NA, Silva JA 2nd, Mota MD. Prospection of genomic regions divergently selected in racing line of Quarter Horses in relation to cutting line.. Animal 2014 Nov;8(11):1754-64.
    pubmed: 25032727doi: 10.1017/s1751731114001761google scholar: lookup
19. Binns MM, Boehler DA, Lambert DH. Identification of the myostatin locus (MSTN) as having a major effect on optimum racing distance in the Thoroughbred horse in the USA.. Anim Genet 2010 Dec;41 Suppl 2:154-8.
    pubmed: 21070290doi: 10.1111/j.1365-2052.2010.02126.xgoogle scholar: lookup
20. Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, Spector TD, Keinan A, Ley RE, Gevers D, Clark AG. Host genetic variation impacts microbiome composition across human body sites.. Genome Biol 2015 Sep 15;16(1):191.
    pmc: PMC4570153pubmed: 26374288doi: 10.1186/s13059-015-0759-1google scholar: lookup
21. Blott S.C, Vaudin M. Genomic selection against fracture risk in the Thoroughbred horse. BMC Genomics 15, 1–8.
22. Blott SC, Swinburne JE, Sibbons C, Fox-Clipsham LY, Helwegen M, Hillyer L, Parkin TD, Newton JR, Vaudin M. A genome-wide association study demonstrates significant genetic variation for fracture risk in Thoroughbred racehorses.. BMC Genomics 2014 Feb 21;15:147.
    pmc: PMC4008154pubmed: 24559379doi: 10.1186/1471-2164-15-147google scholar: lookup
23. Boeskorov G.G, Potapova O.R, Protopopov A.V, Plotnikov V.V, Maschenko E.N, Shchelchkova M.V, Petrova E.A, Kowalczyk R, van der Plicht J, Tikhonov A.N. A study of a frozen mummy of a wild horse from the Holocene of Yakutia, East Siberia, Russia. Mammal Research 63, 1–8.
24. Boivin R, Vargas A, Lefebvre-Lavoie J, Lauzon AM, Lavoie JP. Inhaled corticosteroids modulate the (+)insert smooth muscle myosin heavy chain in the equine asthmatic airways.. Thorax 2014 Dec;69(12):1113-9.
    pubmed: 25205586doi: 10.1136/thoraxjnl-2014-205572google scholar: lookup
25. Bond S, Léguillette R, Richard EA, Couetil L, Lavoie JP, Martin JG, Pirie RS. Equine asthma: Integrative biologic relevance of a recently proposed nomenclature.. J Vet Intern Med 2018 Nov;32(6):2088-2098.
    pmc: PMC6271326pubmed: 30294851doi: 10.1111/jvim.15302google scholar: lookup
26. Bordbari MH, Penedo MCT, Aleman M, Valberg SJ, Mickelson J, Finno CJ. Deletion of 2.7 kb near HOXD3 in an Arabian horse with occipitoatlantoaxial malformation.. Anim Genet 2017 Jun;48(3):287-294.
    pmc: PMC5441686pubmed: 28111759doi: 10.1111/age.12531google scholar: lookup
27. Boyko AR, Brooks SA, Behan-Braman A, Castelhano M, Corey E, Oliveira KC, Swinburne JE, Todhunter RJ, Zhang Z, Ainsworth DM, Robinson NE. Genomic analysis establishes correlation between growth and laryngeal neuropathy in Thoroughbreds.. BMC Genomics 2014 Apr 3;15:259.
    pmc: PMC4051171pubmed: 24707981doi: 10.1186/1471-2164-15-259google scholar: lookup
28. Braam A, Nasholm A, Roepstorff L, Philipsson J. Genetic variation in durability of Swedish Warmblood horses using competition results. Livestock Science 142, 181–7.
29. Brakenhoff JE, Holcombe SJ, Hauptman JG, Smith HK, Nickels FA, Caron JP. The prevalence of laryngeal disease in a large population of competition draft horses.. Vet Surg 2006 Aug;35(6):579-83.
    pubmed: 16911159doi: 10.1111/j.1532-950x.2006.00192.xgoogle scholar: lookup
30. Brandariz-Fontes C, Leonard JA, Vega-Pla JL, Backström N, Lindgren G, Lippold S, Rico C. Y-chromosome analysis in Retuertas horses.. PLoS One 2013;8(5):e64985.
    pmc: PMC3669082pubmed: 23741439doi: 10.1371/journal.pone.0064985google scholar: lookup
31. Brard S, Ricard A. Genome-wide association study for jumping performances in French sport horses.. Anim Genet 2015 Feb;46(1):78-81.
    pubmed: 25515185doi: 10.1111/age.12245google scholar: lookup
32. Brooks SA, Gabreski N, Miller D, Brisbin A, Brown HE, Streeter C, Mezey J, Cook D, Antczak DF. Whole-genome SNP association in the horse: identification of a deletion in myosin Va responsible for Lavender Foal Syndrome.. PLoS Genet 2010 Apr 15;6(4):e1000909.
    pmc: PMC2855325pubmed: 20419149doi: 10.1371/journal.pgen.1000909google scholar: lookup
33. Brosnahan MM, Brooks SA, Antczak DF. Equine clinical genomics: A clinician's primer.. Equine Vet J 2010 Oct;42(7):658-70.
    pmc: PMC3297474pubmed: 20840582doi: 10.1111/j.2042-3306.2010.00166.xgoogle scholar: lookup
34. Bullone M, Lavoie JP. The Contribution of Oxidative Stress and Inflamm-Aging in Human and Equine Asthma.. Int J Mol Sci 2017 Dec 5;18(12).
    pmc: PMC5751215pubmed: 29206130doi: 10.3390/ijms18122612google scholar: lookup
35. Burns EN, Bordbari MH, Mienaltowski MJ, Affolter VK, Barro MV, Gianino F, Gianino G, Giulotto E, Kalbfleisch TS, Katzman SA, Lassaline M, Leeb T, Mack M, Müller EJ, MacLeod JN, Ming-Whitfield B, Alanis CR, Raudsepp T, Scott E, Vig S, Zhou H, Petersen JL, Bellone RR, Finno CJ. Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project.. Anim Genet 2018 Dec;49(6):564-570.
    pmc: PMC6264908pubmed: 30311254doi: 10.1111/age.12717google scholar: lookup
36. Cerutti F, Gamba R, Mazzagatti A, Piras FM, Cappelletti E, Belloni E, Nergadze SG, Raimondi E, Giulotto E. The major horse satellite DNA family is associated with centromere competence.. Mol Cytogenet 2016;9:35.
    pmc: PMC4847189pubmed: 27123044doi: 10.1186/s13039-016-0242-zgoogle scholar: lookup
37. Chowdhary B.P. (2013) Equine Genomics. Wiley‐Blackwell, Ames.
38. Chowdhary BP, Bailey E. Equine genomics: galloping to new frontiers.. Cytogenet Genome Res 2003;102(1-4):184-8.
    pubmed: 14970700doi: 10.1159/000075746google scholar: lookup
39. Chowdhary BP, Raudsepp T. The horse genome.. Genome Dyn 2006;2:97-110.
    pubmed: 18753773doi: 10.1159/000095098google scholar: lookup
40. Chowdhary BP, Raudsepp T. The horse genome derby: racing from map to whole genome sequence.. Chromosome Res 2008;16(1):109-27.
    pubmed: 18274866doi: 10.1007/s10577-008-1204-zgoogle scholar: lookup
41. Chowdhary BP, Paria N, Raudsepp T. Potential applications of equine genomics in dissecting diseases and fertility.. Anim Reprod Sci 2008 Sep;107(3-4):208-18.
    pubmed: 18524508doi: 10.1016/j.anireprosci.2008.04.010google scholar: lookup
42. Christen G, Gerber V, Dolf G, Burger D, Koch C. Inheritance of equine sarcoid disease in Franches-Montagnes horses.. Vet J 2014 Jan;199(1):68-71.
    pubmed: 24152383doi: 10.1016/j.tvjl.2013.09.053google scholar: lookup
43. Coleman SJ, Zeng Z, Wang K, Luo S, Khrebtukova I, Mienaltowski MJ, Schroth GP, Liu J, MacLeod JN. Structural annotation of equine protein-coding genes determined by mRNA sequencing.. Anim Genet 2010 Dec;41 Suppl 2:121-30.
    pubmed: 21070285doi: 10.1111/j.1365-2052.2010.02118.xgoogle scholar: lookup
44. Coleman S.J, Mienaltowski M.J, MacLeod J.N. Functional genomics. In: Equine Genomics (Ed. by Chowdhary B.P.), pp. 125–41. John Wiley & Sons, Inc., Blackwell Publishing, Ames, IA.
45. Coleman SJ, Zeng Z, Hestand MS, Liu J, Macleod JN. Analysis of unannotated equine transcripts identified by mRNA sequencing.. PLoS One 2013;8(7):e70125.
    pmc: PMC3726457pubmed: 23922931doi: 10.1371/journal.pone.0070125google scholar: lookup
46. Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.. Nature 2007 Jun 14;447(7146):799-816.
    pmc: PMC2212820pubmed: 17571346doi: 10.1038/nature05874google scholar: lookup
47. Cook D, Gallagher PC, Bailey E. Genetics of swayback in American Saddlebred horses.. Anim Genet 2010 Dec;41 Suppl 2:64-71.
    pubmed: 21070278doi: 10.1111/j.1365-2052.2010.02108.xgoogle scholar: lookup
48. Corbin LJ, Blott SC, Swinburne JE, Sibbons C, Fox-Clipsham LY, Helwegen M, Parkin TD, Newton JR, Bramlage LR, McIlwraith CW, Bishop SC, Woolliams JA, Vaudin M. A genome-wide association study of osteochondritis dissecans in the Thoroughbred.. Mamm Genome 2012 Apr;23(3-4):294-303.
    pubmed: 22052004doi: 10.1007/s00335-011-9363-1google scholar: lookup
49. De Keyser K, Janssens S, Peeters LM, Foqué N, Gasthuys F, Oosterlinck M, Buys N. Genetic parameters for chronic progressive lymphedema in Belgian Draught Horses.. J Anim Breed Genet 2014 Dec;131(6):522-8.
    pubmed: 24641331doi: 10.1111/jbg.12087google scholar: lookup
50. Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.. Curr Biol 2015 Oct 5;25(19):2577-83.
    pmc: PMC5104162pubmed: 26412128doi: 10.1016/j.cub.2015.08.032google scholar: lookup
51. Desjardin C, Vaiman A, Mata X, Legendre R, Laubier J, Kennedy SP, Laloe D, Barrey E, Jacques C, Cribiu EP, Schibler L. Next-generation sequencing identifies equine cartilage and subchondral bone miRNAs and suggests their involvement in osteochondrosis physiopathology.. BMC Genomics 2014 Sep 17;15(1):798.
    pmc: PMC4190437pubmed: 25227120doi: 10.1186/1471-2164-15-798google scholar: lookup
52. Dias IR, Viegas CA, Carvalho PP. Large Animal Models for Osteochondral Regeneration.. Adv Exp Med Biol 2018;1059:441-501.
    pubmed: 29736586doi: 10.1007/978-3-319-76735-2_20google scholar: lookup
53. Dierks C, Löhring K, Lampe V, Wittwer C, Drögemüller C, Distl O. Genome-wide search for markers associated with osteochondrosis in Hanoverian warmblood horses.. Mamm Genome 2007 Oct;18(10):739-47.
    pubmed: 17906894doi: 10.1007/s00335-007-9058-9google scholar: lookup
54. Dierks C, Komm K, Lampe V, Distl O. Fine mapping of a quantitative trait locus for osteochondrosis on horse chromosome 2.. Anim Genet 2010 Dec;41 Suppl 2:87-90.
    pubmed: 21070281doi: 10.1111/j.1365-2052.2010.02113.xgoogle scholar: lookup
55. Diesterbeck US, Hertsch B, Distl O. Genome-wide search for microsatellite markers associated with radiologic alterations in the navicular bone of Hanoverian warmblood horses.. Mamm Genome 2007 May;18(5):373-81.
    pubmed: 17551792doi: 10.1007/s00335-007-9021-9google scholar: lookup
56. van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C. Ten years of next-generation sequencing technology.. Trends Genet 2014 Sep;30(9):418-26.
    pubmed: 25108476doi: 10.1016/j.tig.2014.07.001google scholar: lookup
57. Distl O. The genetics of equine osteochondrosis.. Vet J 2013 Jul;197(1):13-8.
    pubmed: 23809989doi: 10.1016/j.tvjl.2013.03.036google scholar: lookup
58. Doan R, Cohen N, Harrington J, Veazey K, Juras R, Cothran G, McCue ME, Skow L, Dindot SV. Identification of copy number variants in horses.. Genome Res 2012 May;22(5):899-907.
    pmc: PMC3337435pubmed: 22383489doi: 10.1101/gr.128991.111google scholar: lookup
59. Drögemüller M, Jagannathan V, Welle MM, Graubner C, Straub R, Gerber V, Burger D, Signer-Hasler H, Poncet PA, Klopfenstein S, von Niederhäusern R, Tetens J, Thaller G, Rieder S, Drögemüller C, Leeb T. Congenital hepatic fibrosis in the Franches-Montagnes horse is associated with the polycystic kidney and hepatic disease 1 (PKHD1) gene.. PLoS One 2014;9(10):e110125.
    pmc: PMC4190318pubmed: 25295861doi: 10.1371/journal.pone.0110125google scholar: lookup
60. Ducro BJ, Schurink A, Bastiaansen JW, Boegheim IJ, van Steenbeek FG, Vos-Loohuis M, Nijman IJ, Monroe GR, Hellinga I, Dibbits BW, Back W, Leegwater PA. A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses.. BMC Genomics 2015 Oct 9;16:761.
    pmc: PMC4600337pubmed: 26452345doi: 10.1186/s12864-015-1936-zgoogle scholar: lookup
61. Dupuis MC, Zhang Z, Druet T, Denoix JM, Charlier C, Lekeux P, Georges M. Results of a haplotype-based GWAS for recurrent laryngeal neuropathy in the horse.. Mamm Genome 2011 Oct;22(9-10):613-20.
    pubmed: 21698472doi: 10.1007/s00335-011-9337-3google scholar: lookup
62. Eberth JE, Graves KT, MacLeod JN, Bailey E. Multiple alleles of ACAN associated with chondrodysplastic dwarfism in Miniature horses.. Anim Genet 2018 Oct;49(5):413-420.
    pubmed: 30058072doi: 10.1111/age.12682google scholar: lookup
63. Elzinga S.E, Weese J.S, Adams A.A. Comparison of the fecal microbiota in horses with equine metabolic syndrome and metabolically normal controls fed a similar all‐forage diet. Journal of Equine Veterinary Science 44, 9–16.
64. Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, Barrett JH, Bayarsaikhan J, Benecke N, Bernáldez-Sánchez E, Berrocal-Rangel L, Biglari F, Boessenkool S, Boldgiv B, Brem G, Brown D, Burger J, Crubézy E, Daugnora L, Davoudi H, de Barros Damgaard P, de Los Ángeles de Chorro Y de Villa-Ceballos M, Deschler-Erb S, Detry C, Dill N, do Mar Oom M, Dohr A, Ellingvåg S, Erdenebaatar D, Fathi H, Felkel S, Fernández-Rodríguez C, García-Viñas E, Germonpré M, Granado JD, Hallsson JH, Hemmer H, Hofreiter M, Kasparov A, Khasanov M, Khazaeli R, Kosintsev P, Kristiansen K, Kubatbek T, Kuderna L, Kuznetsov P, Laleh H, Leonard JA, Lhuillier J, Liesau von Lettow-Vorbeck C, Logvin A, Lõugas L, Ludwig A, Luis C, Arruda AM, Marques-Bonet T, Matoso Silva R, Merz V, Mijiddorj E, Miller BK, Monchalov O, Mohaseb FA, Morales A, Nieto-Espinet A, Nistelberger H, Onar V, Pálsdóttir AH, Pitulko V, Pitskhelauri K, Pruvost M, Rajic Sikanjic P, Rapan Papeša A, Roslyakova N, Sardari A, Sauer E, Schafberg R, Scheu A, Schibler J, Schlumbaum A, Serrand N, Serres-Armero A, Shapiro B, Sheikhi Seno S, Shevnina I, Shidrang S, Southon J, Star B, Sykes N, Taheri K, Taylor W, Teegen WR, Trbojević Vukičević T, Trixl S, Tumen D, Undrakhbold S, Usmanova E, Vahdati A, Valenzuela-Lamas S, Viegas C, Wallner B, Weinstock J, Zaibert V, Clavel B, Lepetz S, Mashkour M, Helgason A, Stefánsson K, Barrey E, Willerslev E, Outram AK, Librado P, Orlando L. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.. Cell 2019 May 30;177(6):1419-1435.e31.
    pmc: PMC6547883pubmed: 31056281doi: 10.1016/j.cell.2019.03.049google scholar: lookup
65. Jäderkvist Fegraeus K, Hirschberg I, Árnason T, Andersson L, Velie BD, Andersson LS, Lindgren G. To pace or not to pace: a pilot study of four- and five-gaited Icelandic horses homozygous for the DMRT3 'Gait Keeper' mutation.. Anim Genet 2017 Dec;48(6):694-697.
    pubmed: 29023800doi: 10.1111/age.12610google scholar: lookup
66. Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R, Neuditschko M, Rieder S, Velie B, Lindgren G, Rubin CJ, Schlötterer C, Rattei T, Brem G, Wallner B. Asian horses deepen the MSY phylogeny.. Anim Genet 2018 Feb;49(1):90-93.
    pubmed: 29333704doi: 10.1111/age.12635google scholar: lookup
67. Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O, Fries R, Jagannathan V, Janečka JE, Leeb T, Lindgren G, McCue M, Metzger J, Neuditschko M, Rattei T, Raudsepp T, Rieder S, Rubin CJ, Schaefer R, Schlötterer C, Thaller G, Tetens J, Velie B, Brem G, Wallner B. The horse Y chromosome as an informative marker for tracing sire lines.. Sci Rep 2019 Apr 15;9(1):6095.
    pmc: PMC6465346pubmed: 30988347doi: 10.1038/s41598-019-42640-wgoogle scholar: lookup
68. Finno CJ, Bannasch DL. Applied equine genetics.. Equine Vet J 2014 Sep;46(5):538-44.
    pmc: PMC4327934pubmed: 24802051doi: 10.1111/evj.12294google scholar: lookup
69. Finno CJ, Spier SJ, Valberg SJ. Equine diseases caused by known genetic mutations.. Vet J 2009 Mar;179(3):336-47.
    pubmed: 18472287doi: 10.1016/j.tvjl.2008.03.016google scholar: lookup
70. Finno CJ, Famula T, Aleman M, Higgins RJ, Madigan JE, Bannasch DL. Pedigree analysis and exclusion of alpha-tocopherol transfer protein (TTPA) as a candidate gene for neuroaxonal dystrophy in the American Quarter Horse.. J Vet Intern Med 2013 Jan-Feb;27(1):177-85.
    pmc: PMC4557866pubmed: 23186252doi: 10.1111/jvim.12015google scholar: lookup
71. Finno CJ, Aleman M, Higgins RJ, Madigan JE, Bannasch DL. Risk of false positive genetic associations in complex traits with underlying population structure: a case study.. Vet J 2014 Dec;202(3):543-9.
    pmc: PMC4337777pubmed: 25278384doi: 10.1016/j.tvjl.2014.09.013google scholar: lookup
72. Finno CJ, Gianino G, Perumbakkam S, Williams ZJ, Bordbari MH, Gardner KL, Burns E, Peng S, Durward-Akhurst SA, Valberg SJ. A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses.. Skelet Muscle 2018 Mar 6;8(1):7.
    pmc: PMC5838957pubmed: 29510741doi: 10.1186/s13395-018-0155-0google scholar: lookup
73. Fonseca M.G, Ferraz G.D, Lage J, Pereira G.L, Curi R.A. A genome‐wide association study reveals differences in the genetic mechanism of control of the two gait patterns of the Brazilian Mangalarga Marchador breed. Journal of Equine Veterinary Science 53, 64–7.
74. Frank N, Geor RJ, Bailey SR, Durham AE, Johnson PJ. Equine metabolic syndrome.. J Vet Intern Med 2010 May-Jun;24(3):467-75.
    pubmed: 20384947doi: 10.1111/j.1939-1676.2010.0503.xgoogle scholar: lookup
75. Frischknecht M, Jagannathan V, Plattet P, Neuditschko M, Signer-Hasler H, Bachmann I, Pacholewska A, Drögemüller C, Dietschi E, Flury C, Rieder S, Leeb T. A Non-Synonymous HMGA2 Variant Decreases Height in Shetland Ponies and Other Small Horses.. PLoS One 2015;10(10):e0140749.
    pmc: PMC4608717pubmed: 26474182doi: 10.1371/journal.pone.0140749google scholar: lookup
76. Frischknecht M, Signer-Hasler H, Leeb T, Rieder S, Neuditschko M. Genome-wide association studies based on sequence-derived genotypes reveal new QTL associated with conformation and performance traits in the Franches-Montagnes horse breed.. Anim Genet 2016 Apr;47(2):227-9.
    pubmed: 26767322doi: 10.1111/age.12406google scholar: lookup
77. Fritz KL, McCue ME, Valberg SJ, Rendahl AK, Mickelson JR. Genetic mapping of recurrent exertional rhabdomyolysis in a population of North American Thoroughbreds.. Anim Genet 2012 Dec;43(6):730-8.
    pmc: PMC3665002pubmed: 22497487doi: 10.1111/j.1365-2052.2012.02351.xgoogle scholar: lookup
78. Fritz KL, Kaese HJ, Valberg SJ, Hendrickson JA, Rendahl AK, Bellone RR, Dynes KM, Wagner ML, Lucio MA, Cuomo FM, Brinkmeyer-Langford CL, Skow LC, Mickelson JR, Rutherford MS, McCue ME. Genetic risk factors for insidious equine recurrent uveitis in Appaloosa horses.. Anim Genet 2014 Jun;45(3):392-9.
    pubmed: 24467435doi: 10.1111/age.12129google scholar: lookup
79. Gaffney B, Cunningham EP. Estimation of genetic trend in racing performance of thoroughbred horses.. Nature 1988 Apr 21;332(6166):722-4.
    pubmed: 3357536doi: 10.1038/332722a0google scholar: lookup
80. Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Crubézy E, Benecke N, Olsen S, Brown D, Anthony D, Massy K, Pitulko V, Kasparov A, Brem G, Hofreiter M, Mukhtarova G, Baimukhanov N, Lõugas L, Onar V, Stockhammer PW, Krause J, Boldgiv B, Undrakhbold S, Erdenebaatar D, Lepetz S, Mashkour M, Ludwig A, Wallner B, Merz V, Merz I, Zaibert V, Willerslev E, Librado P, Outram AK, Orlando L. Ancient genomes revisit the ancestry of domestic and Przewalski's horses.. Science 2018 Apr 6;360(6384):111-114.
    pubmed: 29472442doi: 10.1126/science.aao3297google scholar: lookup
81. Gerber V, Robinson NE, Venta RJ, Rawson J, Jefcoat AM, Hotchkiss JA. Mucin genes in horse airways: MUC5AC, but not MUC2, may play a role in recurrent airway obstruction.. Equine Vet J 2003 May;35(3):252-7.
    pubmed: 12755427doi: 10.2746/042516403776148291google scholar: lookup
82. Gerber V, Straub R, Marti E, Hauptman J, Herholz C, King M, Imhof A, Tahon L, Robinson NE. Endoscopic scoring of mucus quantity and quality: observer and horse variance and relationship to inflammation, mucus viscoelasticity and volume.. Equine Vet J 2004 Nov;36(7):576-82.
    pubmed: 15581321doi: 10.2746/0425164044864525google scholar: lookup
83. Ghosh S, Qu Z, Das PJ, Fang E, Juras R, Cothran EG, McDonell S, Kenney DG, Lear TL, Adelson DL, Chowdhary BP, Raudsepp T. Copy number variation in the horse genome.. PLoS Genet 2014 Oct;10(10):e1004712.
    pmc: PMC4207638pubmed: 25340504doi: 10.1371/journal.pgen.1004712google scholar: lookup
84. Ghosh S, Das PJ, McQueen CM, Gerber V, Swiderski CE, Lavoie JP, Chowdhary BP, Raudsepp T. Analysis of genomic copy number variation in equine recurrent airway obstruction (heaves).. Anim Genet 2016 Jun;47(3):334-44.
    pubmed: 26932307doi: 10.1111/age.12426google scholar: lookup
85. Ghosh M, Sharma N, Singh AK, Gera M, Pulicherla KK, Jeong DK. Transformation of animal genomics by next-generation sequencing technologies: a decade of challenges and their impact on genetic architecture.. Crit Rev Biotechnol 2018 Dec;38(8):1157-1175.
    pubmed: 29631431doi: 10.1080/07388551.2018.1451819google scholar: lookup
86. Giuffra E, Tuggle CK. Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap.. Annu Rev Anim Biosci 2019 Feb 15;7:65-88.
    pubmed: 30427726doi: 10.1146/annurev-animal-020518-114913google scholar: lookup
87. Giulotto E, Raimondi E, Sullivan KF. The Unique DNA Sequences Underlying Equine Centromeres.. Prog Mol Subcell Biol 2017;56:337-354.
    pubmed: 28840244doi: 10.1007/978-3-319-58592-5_14google scholar: lookup
88. Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, Spector TD, Bell JT, Clark AG, Ley RE. Genetic Determinants of the Gut Microbiome in UK Twins.. Cell Host Microbe 2016 May 11;19(5):731-43.
    pmc: PMC4915943pubmed: 27173935doi: 10.1016/j.chom.2016.04.017google scholar: lookup
89. Goto H, Ryder OA, Fisher AR, Schultz B, Kosakovsky Pond SL, Nekrutenko A, Makova KD. A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses.. Genome Biol Evol 2011;3:1096-106.
    pmc: PMC3194890pubmed: 21803766doi: 10.1093/gbe/evr067google scholar: lookup
90. Van Grevenhof EM, Ducro BJ, Van Weeren PR, Van Tartwijk JM, Van den Belt AJ, Bijma P. Prevalence of various radiographic manifestations of osteochondrosis and their correlations between and within joints in Dutch warmblood horses.. Equine Vet J 2009 Jan;41(1):11-6.
    pubmed: 19301576doi: 10.2746/042516408x334794google scholar: lookup
91. Gu J, MacHugh DE, McGivney BA, Park SD, Katz LM, Hill EW. Association of sequence variants in CKM (creatine kinase, muscle) and COX4I2 (cytochrome c oxidase, subunit 4, isoform 2) genes with racing performance in Thoroughbred horses.. Equine Vet J Suppl 2010 Nov;(38):569-75.
    pubmed: 21059062doi: 10.1111/j.2042-3306.2010.00181.xgoogle scholar: lookup
92. Gurgul A, Jasielczuk I, Semik-Gurgul E, Pawlina-Tyszko K, Stefaniuk-Szmukier M, Szmatoła T, Polak G, Tomczyk-Wrona I, Bugno-Poniewierska M. A genome-wide scan for diversifying selection signatures in selected horse breeds.. PLoS One 2019;14(1):e0210751.
    pmc: PMC6353161pubmed: 30699152doi: 10.1371/journal.pone.0210751google scholar: lookup
93. Han H, Wallner B, Rigler D, MacHugh DE, Manglai D, Hill EW. Chinese Mongolian horses may retain early domestic male genetic lineages yet to be discovered.. Anim Genet 2019 Aug;50(4):399-402.
    pubmed: 31073991doi: 10.1111/age.12780google scholar: lookup
94. Hemmann K, Ahonen S, Raekallio M, Vainio O, Lohi H. Exploration of known stereotypic behaviour-related candidate genes in equine crib-biting.. Animal 2014 Mar;8(3):347-53.
    pubmed: 24387899doi: 10.1017/s1751731113002346google scholar: lookup
95. Hendricks B.L. (2007) International Encyclopedia of Horse Breeds. Norman, OK: University of Oklahoma Press.
96. Henkel J, Lafayette C, Brooks SA, Martin K, Patterson-Rosa L, Cook D, Jagannathan V, Leeb T. Whole-genome sequencing reveals a large deletion in the MITF gene in horses with white spotted coat colour and increased risk of deafness.. Anim Genet 2019 Apr;50(2):172-174.
    pubmed: 30644113doi: 10.1111/age.12762google scholar: lookup
97. Hestand MS, Kalbfleisch TS, Coleman SJ, Zeng Z, Liu J, Orlando L, MacLeod JN. Annotation of the Protein Coding Regions of the Equine Genome.. PLoS One 2015;10(6):e0124375.
    pmc: PMC4481266pubmed: 26107351doi: 10.1371/journal.pone.0124375google scholar: lookup
98. Higuchi R, Bowman B, Freiberger M, Ryder OA, Wilson AC. DNA sequences from the quagga, an extinct member of the horse family.. Nature 1984 Nov 15-21;312(5991):282-4.
    pubmed: 6504142doi: 10.1038/312282a0google scholar: lookup
99. Hill EW, Gu J, McGivney BA, MacHugh DE. Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance.. Anim Genet 2010 Dec;41 Suppl 2:56-63.
    pubmed: 21070277doi: 10.1111/j.1365-2052.2010.02104.xgoogle scholar: lookup
100. Hill EW, McGivney BA, Gu J, Whiston R, Machugh DE. A genome-wide SNP-association study confirms a sequence variant (g.66493737C>T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses.. BMC Genomics 2010 Oct 11;11:552.
     pmc: PMC3091701pubmed: 20932346doi: 10.1186/1471-2164-11-552google scholar: lookup
101. Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.. Proc Natl Acad Sci U S A 2009 Jun 9;106(23):9362-7.
     pmc: PMC2687147pubmed: 19474294doi: 10.1073/pnas.0903103106google scholar: lookup
102. Hintz R.L, Vanvleck L.D. Factors influencing racing performance of standardbred pacer. Journal of Animal Science 46, 60–8.
103. Hood DM. The pathophysiology of developmental and acute laminitis.. Vet Clin North Am Equine Pract 1999 Aug;15(2):321-43.
     pubmed: 10472115doi: 10.1016/s0749-0739(17)30148-7google scholar: lookup
104. Hotchkiss JW, Reid SW, Christley RM. A survey of horse owners in Great Britain regarding horses in their care. Part 2: Risk factors for recurrent airway obstruction.. Equine Vet J 2007 Jul;39(4):301-8.
     pubmed: 17722720doi: 10.2746/042516407x180129google scholar: lookup
105. Issouf M, Vargas A, Boivin R, Lavoie JP. SRSF6 is upregulated in asthmatic horses and involved in the MYH11 SMB expression.. Physiol Rep 2018 Oct;6(20):e13896.
     pmc: PMC6198134pubmed: 30350466doi: 10.14814/phy2.13896google scholar: lookup
106. Jacob SI, Murray KJ, Rendahl AK, Geor RJ, Schultz NE, McCue ME. Metabolic perturbations in Welsh Ponies with insulin dysregulation, obesity, and laminitis.. J Vet Intern Med 2018 May;32(3):1215-1233.
     pmc: PMC5980341pubmed: 29572947doi: 10.1111/jvim.15095google scholar: lookup
107. Jäderkvist Fegraeus K, Johansson L, Mäenpää M, Mykkänen A, Andersson LS, Velie BD, Andersson L, Árnason T, Lindgren G. Different DMRT3 Genotypes Are Best Adapted for Harness Racing and Riding in Finnhorses.. J Hered 2015 Nov-Dec;106(6):734-40.
     pubmed: 26285915doi: 10.1093/jhered/esv062google scholar: lookup
108. Jäderkvist K, Andersson LS, Johansson AM, Árnason T, Mikko S, Eriksson S, Andersson L, Lindgren G. The DMRT3 'Gait keeper' mutation affects performance of Nordic and Standardbred trotters.. J Anim Sci 2014 Oct;92(10):4279-86.
     pubmed: 25085403doi: 10.2527/jas.2014-7803google scholar: lookup
109. Jagannathan V, Gerber V, Rieder S, Tetens J, Thaller G, Drögemüller C, Leeb T. Comprehensive characterization of horse genome variation by whole-genome sequencing of 88 horses.. Anim Genet 2019 Feb;50(1):74-77.
     pubmed: 30525216doi: 10.1111/age.12753google scholar: lookup
110. Jain M, Olsen HE, Turner DJ, Stoddart D, Bulazel KV, Paten B, Haussler D, Willard HF, Akeson M, Miga KH. Linear assembly of a human centromere on the Y chromosome.. Nat Biotechnol 2018 Apr;36(4):321-323.
     pmc: PMC5886786pubmed: 29553574doi: 10.1038/nbt.4109google scholar: lookup
111. Janečka JE, Davis BW, Ghosh S, Paria N, Das PJ, Orlando L, Schubert M, Nielsen MK, Stout TAE, Brashear W, Li G, Johnson CD, Metz RP, Zadjali AMA, Love CC, Varner DD, Bellott DW, Murphy WJ, Chowdhary BP, Raudsepp T. Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes.. Nat Commun 2018 Jul 27;9(1):2945.
     pmc: PMC6063916pubmed: 30054462doi: 10.1038/s41467-018-05290-6google scholar: lookup
112. Jeffcott L.B. Osteochondrosis—an international problem for the horse industry. Journal of Equine Veterinary Science 16, 32–7.
113. Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka JL, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. Speciation with gene flow in equids despite extensive chromosomal plasticity.. Proc Natl Acad Sci U S A 2014 Dec 30;111(52):18655-60.
     pmc: PMC4284605pubmed: 25453089doi: 10.1073/pnas.1412627111google scholar: lookup
114. Jost U, Klukowska-Rötzler J, Dolf G, Swinburne JE, Ramseyer A, Bugno M, Burger D, Blott S, Gerber V. A region on equine chromosome 13 is linked to recurrent airway obstruction in horses.. Equine Vet J 2007 May;39(3):236-41.
     pubmed: 17520975doi: 10.2746/042516407x171110google scholar: lookup
115. Kakoi H, Kikuchi M, Tozaki T, Hirota KI, Nagata SI, Hobo S, Takasu M. Distribution of Y chromosomal haplotypes in Japanese native horse populations.. J Equine Sci 2018;29(2):39-42.
     pmc: PMC6033617pubmed: 29991921doi: 10.1294/jes.29.39google scholar: lookup
116. Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN. Improved reference genome for the domestic horse increases assembly contiguity and composition.. Commun Biol 2018;1:197.
     pmc: PMC6240028pubmed: 30456315doi: 10.1038/s42003-018-0199-zgoogle scholar: lookup
117. Kane AJ, Park RD, McIlwraith CW, Rantanen NW, Morehead JP, Bramlage LR. Radiographic changes in Thoroughbred yearlings. Part 1: Prevalence at the time of the yearling sales.. Equine Vet J 2003 Jun;35(4):354-65.
     pubmed: 12880003doi: 10.2746/042516403776014280google scholar: lookup
118. Khaudov AD, Duduev AS, Kokov ZA, Amshokov KK, Zhekamukhov MK, Zaitsev AM, Reissmann M. Genetic analysis of maternal and paternal lineages in Kabardian horses by uniparental molecular markers.. Open Vet J 2018;8(1):40-46.
     pmc: PMC5806666pubmed: 29445620doi: 10.4314/ovj.v8i1.7google scholar: lookup
119. Kinsley MA, Semevolos SA, Duesterdieck-Zellmer KF. Wnt/β-catenin signaling of cartilage canal and osteochondral junction chondrocytes and full thickness cartilage in early equine osteochondrosis.. J Orthop Res 2015 Oct;33(10):1433-8.
     pubmed: 25676127doi: 10.1002/jor.22846google scholar: lookup
120. Klukowska-Rötzler J, Swinburne JE, Drögemüller C, Dolf G, Janda J, Leeb T, Gerber V. The interleukin 4 receptor gene and its role in recurrent airway obstruction in Swiss Warmblood horses.. Anim Genet 2012 Aug;43(4):450-3.
     pubmed: 22497430doi: 10.1111/j.1365-2052.2011.02277.xgoogle scholar: lookup
121. Kraus M, Physick-Sheard PW, Brito LF, Schenkel FS. Estimates of heritability of atrial fibrillation in the Standardbred racehorse.. Equine Vet J 2017 Nov;49(6):718-722.
     pubmed: 28391631doi: 10.1111/evj.12687google scholar: lookup
122. Kreutzmann N, Brem G, Wallner B. The domestic horse harbours Y-chromosomal microsatellite polymorphism only on two widely distributed male lineages.. Anim Genet 2014 Jun;45(3):460.
     pubmed: 24684376doi: 10.1111/age.12149google scholar: lookup
123. Kulbrock M, Lehner S, Metzger J, Ohnesorge B, Distl O. A genome-wide association study identifies risk loci to equine recurrent uveitis in German warmblood horses.. PLoS One 2013;8(8):e71619.
     pmc: PMC3743750pubmed: 23977091doi: 10.1371/journal.pone.0071619google scholar: lookup
124. Lampe V, Dierks C, Distl O. Refinement of a quantitative gene locus on equine chromosome 16 responsible for osteochondrosis in Hanoverian warmblood horses.. Animal 2009 Sep;3(9):1224-31.
     pubmed: 22444898doi: 10.1017/s1751731109004765google scholar: lookup
125. Lampe V, Dierks C, Distl O. Refinement of a quantitative trait locus on equine chromosome 5 responsible for fetlock osteochondrosis in Hanoverian warmblood horses.. Anim Genet 2009 Aug;40(4):553-5.
     pubmed: 19392821doi: 10.1111/j.1365-2052.2009.01865.xgoogle scholar: lookup
126. Lampe V, Dierks C, Komm K, Distl O. Identification of a new quantitative trait locus on equine chromosome 18 responsible for osteochondrosis in Hanoverian warmblood horses.. J Anim Sci 2009 Nov;87(11):3477-81.
     pubmed: 19684265doi: 10.2527/jas.2009-1946google scholar: lookup
127. Langlois B, Blouin C. Practical efficiency of breeding value estimations based on annual earnings of horses for jumping, trotting, and galloping races in France. Livestock Production Science 87, 99–107.
128. Langlois B, Blouin C. Annual, career or single race records for breeding value estimation in race horses. Livestock Science 107, 132–41.
129. Lanz S, Gerber V, Marti E, Rettmer H, Klukowska-Rötzler J, Gottstein B, Matthews JB, Pirie S, Hamza E. Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction.. Vet Immunol Immunopathol 2013 Oct 1;155(4):229-37.
     pubmed: 23972861doi: 10.1016/j.vetimm.2013.07.005google scholar: lookup
130. Lassaline-Utter M, Gemensky-Metzler AJ, Scherrer NM, Stoppini R, Latimer CA, MacLaren NE, Myrna KE. Corneal dystrophy in Friesian horses may represent a variant of pellucid marginal degeneration.. Vet Ophthalmol 2014 Jul;17 Suppl 1:186-94.
     pubmed: 24602247doi: 10.1111/vop.12152google scholar: lookup
131. Lee JR, Hong CP, Moon JW, Jung YD, Kim DS, Kim TH, Gim JA, Bae JH, Choi Y, Eo J, Kwon YJ, Song S, Ko J, Yang YM, Lee HK, Park KD, Ahn K, Do KT, Ha HS, Han K, Yi JM, Cha HJ, Cho BW, Bhak J, Kim HS. Genome-wide analysis of DNA methylation patterns in horse.. BMC Genomics 2014 Jul 15;15(1):598.
     pmc: PMC4117963pubmed: 25027854doi: 10.1186/1471-2164-15-598google scholar: lookup
132. Leeb T, Vogl C, Zhu B, de Jong PJ, Binns MM, Chowdhary BP, Scharfe M, Jarek M, Nordsiek G, Schrader F, Blöcker H. A human-horse comparative map based on equine BAC end sequences.. Genomics 2006 Jun;87(6):772-6.
     pubmed: 16603334doi: 10.1016/j.ygeno.2006.03.002google scholar: lookup
133. Leegwater PA, Vos-Loohuis M, Ducro BJ, Boegheim IJ, van Steenbeek FG, Nijman IJ, Monroe GR, Bastiaansen JW, Dibbits BW, van de Goor LH, Hellinga I, Back W, Schurink A. Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7.. BMC Genomics 2016 Oct 28;17(1):839.
     pmc: PMC5084406pubmed: 27793082doi: 10.1186/s12864-016-3186-0google scholar: lookup
134. Leise BS, Faleiros RR, Watts M, Johnson PJ, Black SJ, Belknap JK. Laminar inflammatory gene expression in the carbohydrate overload model of equine laminitis.. Equine Vet J 2011 Jan;43(1):54-61.
     pubmed: 21143634doi: 10.1111/j.2042-3306.2010.00122.xgoogle scholar: lookup
135. Lepeule J, Bareille N, Robert C, Ezanno P, Valette JP, Jacquet S, Blanchard G, Denoix JM, Seegers H. Association of growth, feeding practices and exercise conditions with the prevalence of Developmental Orthopaedic Disease in limbs of French foals at weaning.. Prev Vet Med 2009 Jun 1;89(3-4):167-77.
     pubmed: 19329202doi: 10.1016/j.prevetmed.2009.02.018google scholar: lookup
136. Lepeule J, Bareille N, Robert C, Valette JP, Jacquet S, Blanchard G, Denoix JM, Seegers H. Association of growth, feeding practices and exercise conditions with the severity of the osteoarticular status of limbs in French foals.. Vet J 2013 Jul;197(1):65-71.
     pubmed: 23664071doi: 10.1016/j.tvjl.2013.03.043google scholar: lookup
137. Lewczuk D, Hecold M, Rusc A, Fraszczak M, Bereznowski A, Korwin‐Kossakowska A, Kaminski S, Szyda J. Single nucleotide polymorphisms associated with osteochondrosis dissecans in Warmblood horses at different stages of training. Animal Production Science 57, 608–13.
138. Lewis SL, Holl HM, Streeter C, Posbergh C, Schanbacher BJ, Place NJ, Mallicote MF, Long MT, Brooks SA. Genomewide association study reveals a risk locus for equine metabolic syndrome in the Arabian horse.. J Anim Sci 2017 Mar;95(3):1071-1079.
     pubmed: 28380523doi: 10.2527/jas.2016.1221google scholar: lookup
139. Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, Boulygina E, Tsygankova S, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Sicheritz-Ponten T, Popov R, Grigoriev S, Alekseev AN, Rubin EM, McCue M, Rieder S, Leeb T, Tikhonov A, Crubézy E, Slatkin M, Marques-Bonet T, Nielsen R, Willerslev E, Kantanen J, Prokhortchouk E, Orlando L. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.. Proc Natl Acad Sci U S A 2015 Dec 15;112(50):E6889-97.
     pmc: PMC4687531pubmed: 26598656doi: 10.1073/pnas.1513696112google scholar: lookup
140. Librado P, Fages A, Gaunitz C, Leonardi M, Wagner S, Khan N, Hanghøj K, Alquraishi SA, Alfarhan AH, Al-Rasheid KA, Der Sarkissian C, Schubert M, Orlando L. The Evolutionary Origin and Genetic Makeup of Domestic Horses.. Genetics 2016 Oct;204(2):423-434.
     pmc: PMC5068837pubmed: 27729493doi: 10.1534/genetics.116.194860google scholar: lookup
141. Librado P, Gamba C, Gaunitz C, Der Sarkissian C, Pruvost M, Albrechtsen A, Fages A, Khan N, Schubert M, Jagannathan V, Serres-Armero A, Kuderna LFK, Povolotskaya IS, Seguin-Orlando A, Lepetz S, Neuditschko M, Thèves C, Alquraishi S, Alfarhan AH, Al-Rasheid K, Rieder S, Samashev Z, Francfort HP, Benecke N, Hofreiter M, Ludwig A, Keyser C, Marques-Bonet T, Ludes B, Crubézy E, Leeb T, Willerslev E, Orlando L. Ancient genomic changes associated with domestication of the horse.. Science 2017 Apr 28;356(6336):442-445.
     pubmed: 28450643doi: 10.1126/science.aam5298google scholar: lookup
142. Lindgren G, Backström N, Swinburne J, Hellborg L, Einarsson A, Sandberg K, Cothran G, Vilà C, Binns M, Ellegren H. Limited number of patrilines in horse domestication.. Nat Genet 2004 Apr;36(4):335-6.
     pubmed: 15034578doi: 10.1038/ng1326google scholar: lookup
143. Lindholm-Perry AK, Kuehn LA, Oliver WT, Sexten AK, Miles JR, Rempel LA, Cushman RA, Freetly HC. Adipose and muscle tissue gene expression of two genes (NCAPG and LCORL) located in a chromosomal region associated with cattle feed intake and gain.. PLoS One 2013;8(11):e80882.
     pmc: PMC3835320pubmed: 24278337doi: 10.1371/journal.pone.0080882google scholar: lookup
144. Ling Y, Ma Y, Guan W, Cheng Y, Wang Y, Han J, Jin D, Mang L, Mahmut H. Identification of Y chromosome genetic variations in Chinese indigenous horse breeds.. J Hered 2010 Sep-Oct;101(5):639-43.
     pubmed: 20497969doi: 10.1093/jhered/esq047google scholar: lookup
145. Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M, Cooper A, Weinstock J, Willerslev E, Shapiro B, Hofreiter M. Discovery of lost diversity of paternal horse lineages using ancient DNA.. Nat Commun 2011 Aug 23;2:450.
     pubmed: 21863017doi: 10.1038/ncomms1447google scholar: lookup
146. Loftus JP, Black SJ, Pettigrew A, Abrahamsen EJ, Belknap JK. Early laminar events involving endothelial activation in horses with black walnut- induced laminitis.. Am J Vet Res 2007 Nov;68(11):1205-11.
     pubmed: 17975975doi: 10.2460/ajvr.68.11.1205google scholar: lookup
147. Lopes MS, Diesterbeck U, da Câmara Machado A, Distl O. Fine mapping a quantitative trait locus on horse chromosome 2 associated with radiological signs of navicular disease in Hanoverian warmblood horses.. Anim Genet 2009 Dec;40(6):955-7.
     pubmed: 19496769doi: 10.1111/j.1365-2052.2009.01923.xgoogle scholar: lookup
148. Lopes MS, Diesterbeck U, Machado Ada C, Distl O. Refinement of quantitative trait loci on equine chromosome 10 for radiological signs of navicular disease in Hanoverian warmblood horses.. Anim Genet 2010 Dec;41 Suppl 2:36-40.
     pubmed: 21070274doi: 10.1111/j.1365-2052.2010.02096.xgoogle scholar: lookup
149. Lu J, Tang T, Tang H, Huang J, Shi S, Wu CI. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication.. Trends Genet 2006 Mar;22(3):126-31.
     pubmed: 16443304doi: 10.1016/j.tig.2006.01.004google scholar: lookup
150. Ludwig EK, Brandon Wiese R, Graham MR, Tyler AJ, Settlage JM, Werre SR, Petersson-Wolfe CS, Kanevsky-Mullarky I, Dahlgren LA. Serum and Synovial Fluid Serum Amyloid A Response in Equine Models of Synovitis and Septic Arthritis.. Vet Surg 2016 Oct;45(7):859-867.
     pubmed: 27580707doi: 10.1111/vsu.12531google scholar: lookup
151. Lykkjen S, Dolvik NI, McCue ME, Rendahl AK, Mickelson JR, Roed KH. Genome-wide association analysis of osteochondrosis of the tibiotarsal joint in Norwegian Standardbred trotters.. Anim Genet 2010 Dec;41 Suppl 2:111-20.
     pubmed: 21070284doi: 10.1111/j.1365-2052.2010.02117.xgoogle scholar: lookup
152. Lykkjen S, Roed KH, Dolvik NI. Osteochondrosis and osteochondral fragments in Standardbred trotters: prevalence and relationships.. Equine Vet J 2012 May;44(3):332-8.
     pubmed: 21895752doi: 10.1111/j.2042-3306.2011.00434.xgoogle scholar: lookup
153. Mach N, Plancade S, Pacholewska A, Lecardonnel J, Rivière J, Moroldo M, Vaiman A, Morgenthaler C, Beinat M, Nevot A, Robert C, Barrey E. Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horse.. Sci Rep 2016 Mar 10;6:22932.
     pmc: PMC4785432pubmed: 26960911doi: 10.1038/srep22932google scholar: lookup
154. Mack M, Kowalski E, Grahn R, Bras D, Penedo MCT, Bellone R. Two Variants in SLC24A5 Are Associated with "Tiger-Eye" Iris Pigmentation in Puerto Rican Paso Fino Horses.. G3 (Bethesda) 2017 Aug 7;7(8):2799-2806.
     pmc: PMC5555483pubmed: 28655738doi: 10.1534/g3.117.043786google scholar: lookup
155. Makvandi-Nejad S, Hoffman GE, Allen JJ, Chu E, Gu E, Chandler AM, Loredo AI, Bellone RR, Mezey JG, Brooks SA, Sutter NB. Four loci explain 83% of size variation in the horse.. PLoS One 2012;7(7):e39929.
     pmc: PMC3394777pubmed: 22808074doi: 10.1371/journal.pone.0039929google scholar: lookup
156. Mansour TA, Scott EY, Finno CJ, Bellone RR, Mienaltowski MJ, Penedo MC, Ross PJ, Valberg SJ, Murray JD, Brown CT. Tissue resolved, gene structure refined equine transcriptome.. BMC Genomics 2017 Jan 20;18(1):103.
     pmc: PMC5251313pubmed: 28107812doi: 10.1186/s12864-016-3451-2google scholar: lookup
157. Marchiori C.M, Pereira G.L, Maiorano A.M, Rogatto G.M, Assoni A.D, Silva J.A.I.I.V, Chardulo L.A.L, Curi R.A. Linkage disequilibrium and population structure characterization in the cutting and racing lines of Quarter Horses bred in Brazil. Livestock Science 219, 45–51.
158. Marti E, Gerber H, Essich G, Oulehla J, Lazary S. The genetic basis of equine allergic diseases. 1. Chronic hypersensitivity bronchitis.. Equine Vet J 1991 Nov;23(6):457-60.
     pubmed: 1778165doi: 10.1111/j.2042-3306.1991.tb03761.xgoogle scholar: lookup
159. Mason VC, Schaefer RJ, McCue ME, Leeb T, Gerber V. eQTL discovery and their association with severe equine asthma in European Warmblood horses.. BMC Genomics 2018 Aug 2;19(1):581.
     pmc: PMC6090848pubmed: 30071827doi: 10.1186/s12864-018-4938-9google scholar: lookup
160. Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, Shafer A, Neri F, Lee K, Kutyavin T, Stehling-Sun S, Johnson AK, Canfield TK, Giste E, Diegel M, Bates D, Hansen RS, Neph S, Sabo PJ, Heimfeld S, Raubitschek A, Ziegler S, Cotsapas C, Sotoodehnia N, Glass I, Sunyaev SR, Kaul R, Stamatoyannopoulos JA. Systematic localization of common disease-associated variation in regulatory DNA.. Science 2012 Sep 7;337(6099):1190-5.
     pmc: PMC3771521pubmed: 22955828doi: 10.1126/science.1222794google scholar: lookup
161. McCoy AM. Animal Models of Osteoarthritis: Comparisons and Key Considerations.. Vet Pathol 2015 Sep;52(5):803-18.
     pubmed: 26063173doi: 10.1177/0300985815588611google scholar: lookup
162. McCoy AM, Beeson SK, Splan RK, Lykkjen S, Ralston SL, Mickelson JR, McCue ME. Identification and validation of risk loci for osteochondrosis in standardbreds.. BMC Genomics 2016 Jan 12;17:41.
     pmc: PMC4709891pubmed: 26753841doi: 10.1186/s12864-016-2385-zgoogle scholar: lookup
163. McCoy AM, Norton EM, Kemper AM, Beeson SK, Mickelson JR, McCue ME. SNP-based heritability and genetic architecture of tarsal osteochondrosis in North American Standardbred horses.. Anim Genet 2019 Feb;50(1):78-81.
     pubmed: 30353927doi: 10.1111/age.12738google scholar: lookup
164. McCue ME, Bannasch DL, Petersen JL, Gurr J, Bailey E, Binns MM, Distl O, Guérin G, Hasegawa T, Hill EW, Leeb T, Lindgren G, Penedo MC, Røed KH, Ryder OA, Swinburne JE, Tozaki T, Valberg SJ, Vaudin M, Lindblad-Toh K, Wade CM, Mickelson JR. A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies.. PLoS Genet 2012 Jan;8(1):e1002451.
     pmc: PMC3257288pubmed: 22253606doi: 10.1371/journal.pgen.1002451google scholar: lookup
165. McGivney CL, Gough KF, McGivney BA, Farries G, Hill EW, Katz LM. Exploratory factor analysis of signalment and conformational measurements in Thoroughbred horses with and without recurrent laryngeal neuropathy.. Equine Vet J 2019 Mar;51(2):179-184.
     pubmed: 29935025doi: 10.1111/evj.12984google scholar: lookup
166. Meira CT, Curi RA, Farah MM, de Oliveira HN, Béltran NA, Silva JA 2nd, Mota MD. Prospection of genomic regions divergently selected in racing line of Quarter Horses in relation to cutting line.. Animal 2014 Nov;8(11):1754-64.
     pubmed: 25032727doi: 10.1017/s1751731114001761google scholar: lookup
167. Meira C.T, Farah M.M, Fortes M.R.S, Moore S.S, Pereira G.L, Silva J.A.V, da Mota M.D.S, Curi R.A. A genome‐wide association study for morphometric traits in quarter horse. Journal of Equine Veterinary Science 34, 1028–31.
168. Meira C.T, Fortes M.R.S, Farah M.M, Porto‐Neto L.R, Kelly M, Moore S.S, Pereira G.L, Chardulo L.A.L, Curi R.A. Speed index in the racing quarter horse: a genome‐wide association study. Journal of Equine Veterinary Science 34, 1263–8.
169. Metzger J, Ohnesorge B, Distl O. Genome-wide linkage and association analysis identifies major gene loci for guttural pouch tympany in Arabian and German warmblood horses.. PLoS One 2012;7(7):e41640.
     pmc: PMC3407181pubmed: 22848553doi: 10.1371/journal.pone.0041640google scholar: lookup
170. Metzger J, Schrimpf R, Philipp U, Distl O. Expression levels of LCORL are associated with body size in horses.. PLoS One 2013;8(2):e56497.
     pmc: PMC3572084pubmed: 23418579doi: 10.1371/journal.pone.0056497google scholar: lookup
171. Metzger J, Tonda R, Beltran S, Agueda L, Gut M, Distl O. Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication.. BMC Genomics 2014 Jul 4;15(1):562.
     pmc: PMC4097168pubmed: 24996778doi: 10.1186/1471-2164-15-562google scholar: lookup
172. Metzger J, Karwath M, Tonda R, Beltran S, Águeda L, Gut M, Gut IG, Distl O. Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses.. BMC Genomics 2015 Oct 9;16:764.
     pmc: PMC4600213pubmed: 26452642doi: 10.1186/s12864-015-1977-3google scholar: lookup
173. Metzger J, Gast AC, Schrimpf R, Rau J, Eikelberg D, Beineke A, Hellige M, Distl O. Whole-genome sequencing reveals a potential causal mutation for dwarfism in the Miniature Shetland pony.. Mamm Genome 2017 Apr;28(3-4):143-151.
     pubmed: 27942904doi: 10.1007/s00335-016-9673-4google scholar: lookup
174. Metzger J, Rau J, Naccache F, Bas Conn L, Lindgren G, Distl O. Genome data uncover four synergistic key regulators for extremely small body size in horses.. BMC Genomics 2018 Jun 25;19(1):492.
     pmc: PMC6019228pubmed: 29940849doi: 10.1186/s12864-018-4877-5google scholar: lookup
175. Meyer M, Arsuaga JL, de Filippo C, Nagel S, Aximu-Petri A, Nickel B, Martínez I, Gracia A, Bermúdez de Castro JM, Carbonell E, Viola B, Kelso J, Prüfer K, Pääbo S. Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.. Nature 2016 Mar 24;531(7595):504-7.
     pubmed: 26976447doi: 10.1038/nature17405google scholar: lookup
176. Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ. Centromere reference models for human chromosomes X and Y satellite arrays.. Genome Res 2014 Apr;24(4):697-707.
     pmc: PMC3975068pubmed: 24501022doi: 10.1101/gr.159624.113google scholar: lookup
177. Milinovich GJ, Trott DJ, Burrell PC, van Eps AW, Thoefner MB, Blackall LL, Al Jassim RA, Morton JM, Pollitt CC. Changes in equine hindgut bacterial populations during oligofructose-induced laminitis.. Environ Microbiol 2006 May;8(5):885-98.
     pubmed: 16623745doi: 10.1111/j.1462-2920.2005.00975.xgoogle scholar: lookup
178. Mirams M, Tatarczuch L, Ahmed YA, Pagel CN, Jeffcott LB, Davies HM, Mackie EJ. Altered gene expression in early osteochondrosis lesions.. J Orthop Res 2009 Apr;27(4):452-7.
     pubmed: 18932239doi: 10.1002/jor.20761google scholar: lookup
179. Mirams M, Ayodele BA, Tatarczuch L, Henson FM, Pagel CN, Mackie EJ. Identification of novel osteochondrosis--Associated genes.. J Orthop Res 2016 Mar;34(3):404-11.
     pubmed: 26296056doi: 10.1002/jor.23033google scholar: lookup
180. Molina A, Valera M, Dos Santos R, Rodero A. Genetic parameters of morphofunctional traits in Andalusian horse. Livestock Production Science 60, 295–303.
181. Moon S, Lee JW, Shin D, Shin KY, Kim J, Choi IY, Kim J, Kim H. A Genome-wide Scan for Selective Sweeps in Racing Horses.. Asian-Australas J Anim Sci 2015 Nov;28(11):1525-31.
     pmc: PMC4647090pubmed: 26333666doi: 10.5713/ajas.14.0696google scholar: lookup
182. Moyers BT, Morrell PL, McKay JK. Genetic Costs of Domestication and Improvement.. J Hered 2018 Feb 14;109(2):103-116.
     pubmed: 28992310doi: 10.1093/jhered/esx069google scholar: lookup
183. Naccache F, Metzger J, Distl O. Genetic risk factors for osteochondrosis in various horse breeds.. Equine Vet J 2018 Sep;50(5):556-563.
     pubmed: 29498750doi: 10.1111/evj.12824google scholar: lookup
184. Asadollahpour Nanaei H, Ayatollahi Mehrgardi A, Esmailizadeh A. Comparative population genomics unveils candidate genes for athletic performance in Hanoverians.. Genome 2019 Apr;62(4):279-285.
     pubmed: 30779599doi: 10.1139/gen-2018-0151google scholar: lookup
185. Nergadze SG, Belloni E, Piras FM, Khoriauli L, Mazzagatti A, Vella F, Bensi M, Vitelli V, Giulotto E, Raimondi E. Discovery and comparative analysis of a novel satellite, EC137, in horses and other equids.. Cytogenet Genome Res 2014;144(2):114-23.
     pubmed: 25342230doi: 10.1159/000368138google scholar: lookup
186. Nergadze SG, Piras FM, Gamba R, Corbo M, Cerutti F, McCarter JGW, Cappelletti E, Gozzo F, Harman RM, Antczak DF, Miller D, Scharfe M, Pavesi G, Raimondi E, Sullivan KF, Giulotto E. Birth, evolution, and transmission of satellite-free mammalian centromeric domains.. Genome Res 2018 Jun;28(6):789-799.
     pmc: PMC5991519pubmed: 29712753doi: 10.1101/gr.231159.117google scholar: lookup
187. Nolte W, Thaller G, Kuehn C. Selection signatures in four German warmblood horse breeds: Tracing breeding history in the modern sport horse.. PLoS One 2019;14(4):e0215913.
     pmc: PMC6483353pubmed: 31022261doi: 10.1371/journal.pone.0215913google scholar: lookup
188. Norton EM, Avila F, Schultz NE, Mickelson JR, Geor RJ, McCue ME. Evaluation of an HMGA2 variant for pleiotropic effects on height and metabolic traits in ponies.. J Vet Intern Med 2019 Mar;33(2):942-952.
     pmc: PMC6430908pubmed: 30666754doi: 10.1111/jvim.15403google scholar: lookup
189. Norton EM, Schultz NE, Rendahl AK, Mcfarlane D, Geor RJ, Mickelson JR, McCue ME. Heritability of metabolic traits associated with equine metabolic syndrome in Welsh ponies and Morgan horses.. Equine Vet J 2019 Jul;51(4):475-480.
     pubmed: 30472742doi: 10.1111/evj.13053google scholar: lookup
190. O'Ferrall G.J.M, Cunningham E.P. Heritability of racing performance in thoroughbred horses. Livestock Production Science 1, 87–97.
191. Ohno S. So much "junk" DNA in our genome.. Brookhaven Symp Biol 1972;23:366-70.
     pubmed: 5065367
192. Ojala M, Vanvleck L.D, Quaas R.L. Factors influencing best annual racing time in Finnish horses. Journal of Animal Science 64, 109–16.
193. Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E. True single-molecule DNA sequencing of a pleistocene horse bone.. Genome Res 2011 Oct;21(10):1705-19.
     pmc: PMC3202287pubmed: 21803858doi: 10.1101/gr.122747.111google scholar: lookup
194. Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.. Nature 2013 Jul 4;499(7456):74-8.
     pubmed: 23803765doi: 10.1038/nature12323google scholar: lookup
195. Orr N, Hill EW, Gu J, Govindarajan P, Conroy J, van Grevenhof EM, Ducro BJ, van Arendonk JA, Knaap JH, van Weeren PR, Machugh DE, Ennis S, Brama PA. Genome-wide association study of osteochondrosis in the tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on chromosomes 3 and 10.. Anim Genet 2013 Aug;44(4):408-12.
     pubmed: 23278111doi: 10.1111/age.12016google scholar: lookup
196. Outram AK, Stear NA, Bendrey R, Olsen S, Kasparov A, Zaibert V, Thorpe N, Evershed RP. The earliest horse harnessing and milking.. Science 2009 Mar 6;323(5919):1332-5.
     pubmed: 19265018doi: 10.1126/science.1168594google scholar: lookup
197. Pääbo S. Molecular cloning of Ancient Egyptian mummy DNA.. Nature 1985 Apr 18-24;314(6012):644-5.
     pubmed: 3990798doi: 10.1038/314644a0google scholar: lookup
198. Pacholewska A, Jagannathan V, Drögemüller M, Klukowska-Rötzler J, Lanz S, Hamza E, Dermitzakis ET, Marti E, Leeb T, Gerber V. Impaired Cell Cycle Regulation in a Natural Equine Model of Asthma.. PLoS One 2015;10(8):e0136103.
     pmc: PMC4546272pubmed: 26292153doi: 10.1371/journal.pone.0136103google scholar: lookup
199. Park W, Kim J, Kim HJ, Choi J, Park JW, Cho HW, Kim BW, Park MH, Shin TS, Cho SK, Park JK, Kim H, Hwang JY, Lee CK, Lee HK, Cho S, Cho BW. Investigation of de novo unique differentially expressed genes related to evolution in exercise response during domestication in Thoroughbred race horses.. PLoS One 2014;9(3):e91418.
     pmc: PMC3962374pubmed: 24658125doi: 10.1371/journal.pone.0091418google scholar: lookup
200. Patterson L, Staiger EA, Brooks SA. DMRT3 is associated with gait type in Mangalarga Marchador horses, but does not control gait ability.. Anim Genet 2015 Apr;46(2):213-5.
     pubmed: 25690906doi: 10.1111/age.12273google scholar: lookup
201. Penedo MC, Millon LV, Bernoco D, Bailey E, Binns M, Cholewinski G, Ellis N, Flynn J, Gralak B, Guthrie A, Hasegawa T, Lindgren G, Lyons LA, Røed KH, Swinburne JE, Tozaki T. International Equine Gene Mapping Workshop Report: a comprehensive linkage map constructed with data from new markers and by merging four mapping resources.. Cytogenet Genome Res 2005;111(1):5-15.
     pubmed: 16093715doi: 10.1159/000085664google scholar: lookup
202. Pereira G.L, de Matteis R, Meira C.T, Regitano L.C.A, Silva J.A.V, Chardulo L.A.L, Curi R.A. Comparison of sequence variants in the PDK4 and COX412 genes between racing and cutting lines of quarter horses and associations with the speed index. Journal of Equine Veterinary Science 39, 1–6.
203. Pereira GL, Malheiros JM, Ospina AMT, Chardulo LAL, Curi RA. Exome sequencing in genomic regions related to racing performance of Quarter Horses.. J Appl Genet 2019 Feb;60(1):79-86.
     pubmed: 30666567doi: 10.1007/s13353-019-00483-1google scholar: lookup
204. Petersen JL, Mickelson JR, Cothran EG, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A, Distl O, Felicetti M, Fox-Clipsham L, Graves KT, Guérin G, Haase B, Hasegawa T, Hemmann K, Hill EW, Leeb T, Lindgren G, Lohi H, Lopes MS, McGivney BA, Mikko S, Orr N, Penedo MC, Piercy RJ, Raekallio M, Rieder S, Røed KH, Silvestrelli M, Swinburne J, Tozaki T, Vaudin M, M Wade C, McCue ME. Genetic diversity in the modern horse illustrated from genome-wide SNP data.. PLoS One 2013;8(1):e54997.
     pmc: PMC3559798pubmed: 23383025doi: 10.1371/journal.pone.0054997google scholar: lookup
205. Petersen JL, Mickelson JR, Rendahl AK, Valberg SJ, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A, Capomaccio S, Cappelli K, Cothran EG, Distl O, Fox-Clipsham L, Graves KT, Guérin G, Haase B, Hasegawa T, Hemmann K, Hill EW, Leeb T, Lindgren G, Lohi H, Lopes MS, McGivney BA, Mikko S, Orr N, Penedo MC, Piercy RJ, Raekallio M, Rieder S, Røed KH, Swinburne J, Tozaki T, Vaudin M, Wade CM, McCue ME. Genome-wide analysis reveals selection for important traits in domestic horse breeds.. PLoS Genet 2013;9(1):e1003211.
     pmc: PMC3547851pubmed: 23349635doi: 10.1371/journal.pgen.1003211google scholar: lookup
206. Petersen JL, Mickelson JR, Cleary KD, McCue ME. The American Quarter Horse: population structure and relationship to the thoroughbred.. J Hered 2014 Mar-Apr;105(2):148-62.
     pmc: PMC3920813pubmed: 24293614doi: 10.1093/jhered/est079google scholar: lookup
207. Petersen JL, Valberg SJ, Mickelson JR, McCue ME. Haplotype diversity in the equine myostatin gene with focus on variants associated with race distance propensity and muscle fiber type proportions.. Anim Genet 2014 Dec;45(6):827-35.
     pmc: PMC4211974pubmed: 25160752doi: 10.1111/age.12205google scholar: lookup
208. Physick-Sheard P, Kraus M, Basrur P, McGurrin K, Kenney D, Schenkel F. Breed predisposition and heritability of atrial fibrillation in the Standardbred horse: a retrospective case-control study.. J Vet Cardiol 2014 Sep;16(3):173-84.
     pubmed: 25087649doi: 10.1016/j.jvc.2014.03.006google scholar: lookup
209. Pielberg G, Mikko S, Sandberg K, Andersson L. Comparative linkage mapping of the Grey coat colour gene in horses.. Anim Genet 2005 Oct;36(5):390-5.
     pubmed: 16167981doi: 10.1111/j.1365-2052.2005.01334.xgoogle scholar: lookup
210. Piras FM, Nergadze SG, Magnani E, Bertoni L, Attolini C, Khoriauli L, Raimondi E, Giulotto E. Uncoupling of satellite DNA and centromeric function in the genus Equus.. PLoS Genet 2010 Feb 12;6(2):e1000845.
     pmc: PMC2820525pubmed: 20169180doi: 10.1371/journal.pgen.1000845google scholar: lookup
211. Pirie RS. Recurrent airway obstruction: a review.. Equine Vet J 2014 May;46(3):276-88.
     pubmed: 24164473doi: 10.1111/evj.12204google scholar: lookup
212. Promerová M, Andersson LS, Juras R, Penedo MC, Reissmann M, Tozaki T, Bellone R, Dunner S, Hořín P, Imsland F, Imsland P, Mikko S, Modrý D, Roed KH, Schwochow D, Vega-Pla JL, Mehrabani-Yeganeh H, Yousefi-Mashouf N, G Cothran E, Lindgren G, Andersson L. Worldwide frequency distribution of the 'Gait keeper' mutation in the DMRT3 gene.. Anim Genet 2014 Apr;45(2):274-82.
     pubmed: 24444049doi: 10.1111/age.12120google scholar: lookup
213. Purgato S, Belloni E, Piras FM, Zoli M, Badiale C, Cerutti F, Mazzagatti A, Perini G, Della Valle G, Nergadze SG, Sullivan KF, Raimondi E, Rocchi M, Giulotto E. Centromere sliding on a mammalian chromosome.. Chromosoma 2015 Jun;124(2):277-87.
     pmc: PMC4446527pubmed: 25413176doi: 10.1007/s00412-014-0493-6google scholar: lookup
214. Rafati N, Andersson LS, Mikko S, Feng C, Raudsepp T, Pettersson J, Janecka J, Wattle O, Ameur A, Thyreen G, Eberth J, Huddleston J, Malig M, Bailey E, Eichler EE, Dalin G, Chowdary B, Andersson L, Lindgren G, Rubin CJ. Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.. G3 (Bethesda) 2016 Jul 7;6(7):2213-23.
     pmc: PMC4938674pubmed: 27207956doi: 10.1534/g3.116.029645google scholar: lookup
215. Ramseyer A, Gaillard C, Burger D, Straub R, Jost U, Boog C, Marti E, Gerber V. Effects of genetic and environmental factors on chronic lower airway disease in horses.. J Vet Intern Med 2007 Jan-Feb;21(1):149-56.
     pubmed: 17338163doi: 10.1892/0891-6640(2007)21[149:eogaef]2.0.co;2google scholar: lookup
216. Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, Seabury CM, Brinkmeyer-Langford C, Lee EJ, Agarwala R, Stallknecht-Rice E, Schäffer AA, Skow LC, Tozaki T, Yasue H, Penedo MC, Lyons LA, Khazanehdari KA, Binns MM, MacLeod JN, Distl O, Guérin G, Leeb T, Mickelson JR, Chowdhary BP. A 4,103 marker integrated physical and comparative map of the horse genome.. Cytogenet Genome Res 2008;122(1):28-36.
     pmc: PMC2587302pubmed: 18931483doi: 10.1159/000151313google scholar: lookup
217. Raudsepp T, McCue ME, Das PJ, Dobson L, Vishnoi M, Fritz KL, Schaefer R, Rendahl AK, Derr JN, Love CC, Varner DD, Chowdhary BP. Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions.. PLoS Genet 2012;8(12):e1003139.
     pmc: PMC3527208pubmed: 23284302doi: 10.1371/journal.pgen.1003139google scholar: lookup
218. Raudsepp T, Das P.J, Chowdhary B.P. Genomics of reproduction and fertility. In: Equine Genomics (Ed. by Chowdhary B.P.), pp. 199–216. John Wiley & Sons, Ames, IA.
219. Rebolledo-Mendez J, Hestand MS, Coleman SJ, Zeng Z, Orlando L, MacLeod JN, Kalbfleisch T. Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads.. PLoS One 2015;10(6):e0126852.
     pmc: PMC4479572pubmed: 26107638doi: 10.1371/journal.pone.0126852google scholar: lookup
220. Ricard A, Chanu I. Genetic parameters of eventing horse competition in France.. Genet Sel Evol 2001 Mar-Apr;33(2):175-90.
     pmc: PMC2705390pubmed: 11333833doi: 10.1186/1297-9686-33-2-175google scholar: lookup
221. Ricard A, FournetHanocq F. Analysis of factors affecting length of competitive life of jumping horses. Genetics Selection Evolution 29, 251–67.
222. Ricard A, Robert C, Blouin C, Baste F, Torquet G, Morgenthaler C, Rivière J, Mach N, Mata X, Schibler L, Barrey E. Endurance Exercise Ability in the Horse: A Trait with Complex Polygenic Determinism.. Front Genet 2017;8:89.
     pmc: PMC5488500pubmed: 28702049doi: 10.3389/fgene.2017.00089google scholar: lookup
223. Riddick TL, Duesterdieck-Zellmer K, Semevolos SA. Gene and protein expression of cartilage canal and osteochondral junction chondrocytes and full-thickness cartilage in early equine osteochondrosis.. Vet J 2012 Dec;194(3):319-25.
     pubmed: 22627046doi: 10.1016/j.tvjl.2012.04.023google scholar: lookup
224. Robinson NE, Derksen FJ, Olszewski MA, Buechner-Maxwell VA. The pathogenesis of chronic obstructive pulmonary disease of horses.. Br Vet J 1996 May;152(3):283-306.
     pubmed: 8762605doi: 10.1016/s0007-1935(96)80101-1google scholar: lookup
225. Rooney MF, Hill EW, Kelly VP, Porter RK. The "speed gene" effect of myostatin arises in Thoroughbred horses due to a promoter proximal SINE insertion.. PLoS One 2018;13(10):e0205664.
     pmc: PMC6209199pubmed: 30379863doi: 10.1371/journal.pone.0205664google scholar: lookup
226. Rosengren Pielberg G, Golovko A, Sundström E, Curik I, Lennartsson J, Seltenhammer MH, Druml T, Binns M, Fitzsimmons C, Lindgren G, Sandberg K, Baumung R, Vetterlein M, Strömberg S, Grabherr M, Wade C, Lindblad-Toh K, Pontén F, Heldin CH, Sölkner J, Andersson L. A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse.. Nat Genet 2008 Aug;40(8):1004-9.
     pubmed: 18641652doi: 10.1038/ng.185google scholar: lookup
227. Saatchi M, Schnabel RD, Taylor JF, Garrick DJ. Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds.. BMC Genomics 2014 Jun 6;15(1):442.
     pmc: PMC4102727pubmed: 24906442doi: 10.1186/1471-2164-15-442google scholar: lookup
228. Sadeghi R, Moradi-Shahrbabak M, Miraei Ashtiani SR, Schlamp F, Cosgrove EJ, Antczak DF. Genetic Diversity of Persian Arabian Horses and Their Relationship to Other Native Iranian Horse Breeds.. J Hered 2019 Mar 5;110(2):173-182.
     pubmed: 30590570doi: 10.1093/jhered/esy061google scholar: lookup
229. Sadek MH, Al-Aboud AZ, Ashmawy AA. Factor analysis of body measurements in Arabian horses.. J Anim Breed Genet 2006 Dec;123(6):369-77.
     pubmed: 17177691doi: 10.1111/j.1439-0388.2006.00618.xgoogle scholar: lookup
230. Santagostino M, Khoriauli L, Gamba R, Bonuglia M, Klipstein O, Piras FM, Vella F, Russo A, Badiale C, Mazzagatti A, Raimondi E, Nergadze SG, Giulotto E. Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression.. BMC Genet 2015 Oct 26;16:126.
     pmc: PMC4623272pubmed: 26503543doi: 10.1186/s12863-015-0281-1google scholar: lookup
231. Schaefer RJ, Schubert M, Bailey E, Bannasch DL, Barrey E, Bar-Gal GK, Brem G, Brooks SA, Distl O, Fries R, Finno CJ, Gerber V, Haase B, Jagannathan V, Kalbfleisch T, Leeb T, Lindgren G, Lopes MS, Mach N, da Câmara Machado A, MacLeod JN, McCoy A, Metzger J, Penedo C, Polani S, Rieder S, Tammen I, Tetens J, Thaller G, Verini-Supplizi A, Wade CM, Wallner B, Orlando L, Mickelson JR, McCue ME. Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.. BMC Genomics 2017 Jul 27;18(1):565.
     pmc: PMC5530493pubmed: 28750625doi: 10.1186/s12864-017-3943-8google scholar: lookup
232. Schnider D, Rieder S, Leeb T, Gerber V, Neuditschko M. A genome-wide association study for equine recurrent airway obstruction in European Warmblood horses reveals a suggestive new quantitative trait locus on chromosome 13.. Anim Genet 2017 Dec;48(6):691-693.
     pubmed: 28737212doi: 10.1111/age.12583google scholar: lookup
233. Schrimpf R, Metzger J, Martinsson G, Sieme H, Distl O. Implication of FKBP6 for male fertility in horses.. Reprod Domest Anim 2015 Apr;50(2):195-199.
     pubmed: 25495881doi: 10.1111/rda.12467google scholar: lookup
234. Schrimpf R, Gottschalk M, Metzger J, Martinsson G, Sieme H, Distl O. Screening of whole genome sequences identified high-impact variants for stallion fertility.. BMC Genomics 2016 Apr 14;17:288.
     pmc: PMC4832559pubmed: 27079378doi: 10.1186/s12864-016-2608-3google scholar: lookup
235. Schröder W, Klostermann A, Stock KF, Distl O. A genome-wide association study for quantitative trait loci of show-jumping in Hanoverian warmblood horses.. Anim Genet 2012 Aug;43(4):392-400.
     pubmed: 22497689doi: 10.1111/j.1365-2052.2011.02265.xgoogle scholar: lookup
236. Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover CA, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L. Prehistoric genomes reveal the genetic foundation and cost of horse domestication.. Proc Natl Acad Sci U S A 2014 Dec 30;111(52):E5661-9.
     pmc: PMC4284583pubmed: 25512547doi: 10.1073/pnas.1416991111google scholar: lookup
237. Schurink A, Wolc A, Ducro BJ, Frankena K, Garrick DJ, Dekkers JC, van Arendonk JA. Genome-wide association study of insect bite hypersensitivity in two horse populations in the Netherlands.. Genet Sel Evol 2012 Oct 30;44(1):31.
     pmc: PMC3524047pubmed: 23110538doi: 10.1186/1297-9686-44-31google scholar: lookup
238. Seiero T, Mark T, Jonsson L. Genetic parameters for longevity and informative value of early indicator traits in Danish show jumping horses. Livestock Science 184, 126–33.
239. Seong HS, Kim NY, Kim DC, Hwang NH, Son DH, Shin JS, Lee JH, Chung WH, Choi JW. Whole genome sequencing analysis of horse populations inhabiting the Korean Peninsula and Przewalski's horse.. Genes Genomics 2019 Jun;41(6):621-628.
     pubmed: 30941726doi: 10.1007/s13258-019-00795-wgoogle scholar: lookup
240. Sevane N, Dunner S, Boado A, Cañon J. Candidate gene analysis of osteochondrosis in Spanish Purebred horses.. Anim Genet 2016 Oct;47(5):570-8.
     pubmed: 27422688doi: 10.1111/age.12453google scholar: lookup
241. Sevane N, Dunner S, Boado A, Cañon J. Polymorphisms in ten candidate genes are associated with conformational and locomotive traits in Spanish Purebred horses.. J Appl Genet 2017 Aug;58(3):355-361.
     pubmed: 27917442doi: 10.1007/s13353-016-0385-ygoogle scholar: lookup
242. Shakhsi-Niaei M, Klukowska-Rötzler J, Drögemüller C, Swinburne J, Ehrmann C, Saftic D, Ramseyer A, Gerber V, Dolf G, Leeb T. Replication and fine-mapping of a QTL for recurrent airway obstruction in European Warmblood horses.. Anim Genet 2012 Oct;43(5):627-31.
     pubmed: 22497545doi: 10.1111/j.1365-2052.2011.02315.xgoogle scholar: lookup
243. Shin DH, Lee JW, Park JE, Choi IY, Oh HS, Kim HJ, Kim H. Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds.. Asian-Australas J Anim Sci 2015 Jun;28(6):771-81.
     pmc: PMC4412973pubmed: 25925054doi: 10.5713/ajas.14.0008google scholar: lookup
244. Signer-Hasler H, Flury C, Haase B, Burger D, Simianer H, Leeb T, Rieder S. A genome-wide association study reveals loci influencing height and other conformation traits in horses.. PLoS One 2012;7(5):e37282.
     pmc: PMC3353922pubmed: 22615965doi: 10.1371/journal.pone.0037282google scholar: lookup
245. Signer-Hasler H, Neuditschko M, Koch C, Froidevaux S, Flury C, Burger D, Leeb T, Rieder S. A chromosomal region on ECA13 is associated with maxillary prognathism in horses.. PLoS One 2014;9(1):e86607.
     pmc: PMC3897735pubmed: 24466169doi: 10.1371/journal.pone.0086607google scholar: lookup
246. Sild E, Rooni K, Värv S, Røed K, Popov R, Kantanen J, Viinlass H. Genetic diversity of Estonian horse breeds and their genetic affinity to northern European and some Asian breeds. Livestock Science 220, 57–66.
247. Snelling WM, Allan MF, Keele JW, Kuehn LA, McDaneld T, Smith TP, Sonstegard TS, Thallman RM, Bennett GL. Genome-wide association study of growth in crossbred beef cattle.. J Anim Sci 2010 Mar;88(3):837-48.
     pubmed: 19966163doi: 10.2527/jas.2009-2257google scholar: lookup
248. Sole M, Bartolome E, Sanchez M.J, Molina A, Valera M. Predictability of adult Show Jumping ability from early information: alternative selection strategies in the Spanish Sport Horse population. Livestock Science 200, 23–8.
249. Staiger EA, Al Abri MA, Pflug KM, Kalla SE, Ainsworth DM, Miller D, Raudsepp T, Sutter NB, Brooks SA. Skeletal variation in Tennessee Walking Horses maps to the LCORL/NCAPG gene region.. Physiol Genomics 2016 May;48(5):325-35.
     pubmed: 26931356doi: 10.1152/physiolgenomics.00100.2015google scholar: lookup
250. Staiger EA, Tseng CT, Miller D, Cassano JM, Nasir L, Garrick D, Brooks SA, Antczak DF. Host genetic influence on papillomavirus-induced tumors in the horse.. Int J Cancer 2016 Aug 15;139(4):784-92.
     pubmed: 27037728doi: 10.1002/ijc.30120google scholar: lookup
251. Steelman SM, Chowdhary BP, Dowd S, Suchodolski J, Janečka JE. Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis.. BMC Vet Res 2012 Nov 27;8:231.
     pmc: PMC3538718pubmed: 23186268doi: 10.1186/1746-6148-8-231google scholar: lookup
252. Stock KF, Distl O. Genetic correlations between performance traits and radiographic findings in the limbs of German Warmblood riding horses.. J Anim Sci 2007 Jan;85(1):31-41.
     pubmed: 17179537doi: 10.2527/jas.2005-605google scholar: lookup
253. Stock KF, Hamann H, Distl O. Estimation of genetic parameters for the prevalence of osseous fragments in limb joints of Hanoverian Warmblood horses.. J Anim Breed Genet 2005 Aug;122(4):271-80.
     pubmed: 16060495doi: 10.1111/j.1439-0388.2005.00527.xgoogle scholar: lookup
254. Sturtevant A.H. On the inheritance of coat color in harness horses. Biological Bulletin 19, 204–16.
255. Suontama M, Saastamoinen M.T, Ojala M. Estimates of non‐genetic effects and genetic parameters for body measures and subjectively scored traits in Finnhorse trotters. Livestock Science 124, 205–9.
256. Swinburne JE, Bogle H, Klukowska-Rötzler J, Drögemüller M, Leeb T, Temperton E, Dolf G, Gerber V. A whole-genome scan for recurrent airway obstruction in Warmblood sport horses indicates two positional candidate regions.. Mamm Genome 2009 Aug;20(8):504-15.
     pubmed: 19760324doi: 10.1007/s00335-009-9214-5google scholar: lookup
257. Szwaczkowski T, Greguła‐Kania M, Stachurska A, Borowska A, Jaworski Z, Gruszecki T.M. Inter‐ and intra‐genetic diversity in the Polish Konik horse: implications for the conservation program. Canadian Journal of Animal Science 96, 570–80.
258. Tadros E.M, Frank N, Horohov D.W. Inflammatory cytokine gene expression in blood during the development of oligofructose‐induced laminitis in horses. Journal of Equine Veterinary Science 33, 802–8.
259. Tavernier A. Estimation of breeding value of jumping horses from their ranks. Livestock Production Science 26, 277–90.
260. Terry RB, Archer S, Brooks S, Bernoco D, Bailey E. Assignment of the appaloosa coat colour gene (LP) to equine chromosome 1.. Anim Genet 2004 Apr;35(2):134-7.
     pubmed: 15025575doi: 10.1111/j.1365-2052.2004.01113.xgoogle scholar: lookup
261. Tetens J, Widmann P, Kühn C, Thaller G. A genome-wide association study indicates LCORL/NCAPG as a candidate locus for withers height in German Warmblood horses.. Anim Genet 2013 Aug;44(4):467-71.
     pubmed: 23418885doi: 10.1111/age.12031google scholar: lookup
262. Teyssèdre S, Dupuis MC, Guérin G, Schibler L, Denoix JM, Elsen JM, Ricard A. Genome-wide association studies for osteochondrosis in French Trotter horses.. J Anim Sci 2012 Jan;90(1):45-53.
     pubmed: 21841084doi: 10.2527/jas.2011-4031google scholar: lookup
263. Thiruvenkadan A.K, Kandasamy N, Panneerselvam S. Inheritance of racing performance of Thoroughbred horses. Livestock Science 121, 308–26.
264. Thiruvenkadan A.K, Kandasamy N, Panneerselvam S. Inheritance of racing performance of trotter horses: an overview. Livestock Science 124, 163–81.
265. Thomer A, Gottschalk M, Christmann A, Naccache F, Jung K, Hewicker-Trautwein M, Distl O, Metzger J. An epistatic effect of KRT25 on SP6 is involved in curly coat in horses.. Sci Rep 2018 Apr 23;8(1):6374.
     pmc: PMC5913262pubmed: 29686323doi: 10.1038/s41598-018-24865-3google scholar: lookup
266. Tozaki T, Miyake T, Kakoi H, Gawahara H, Sugita S, Hasegawa T, Ishida N, Hirota K, Nakano Y. A genome-wide association study for racing performances in Thoroughbreds clarifies a candidate region near the MSTN gene.. Anim Genet 2010 Dec;41 Suppl 2:28-35.
     pubmed: 21070273doi: 10.1111/j.1365-2052.2010.02095.xgoogle scholar: lookup
267. Tozaki T, Kikuchi M, Kakoi H, Hirota KI, Nagata SI. A genome-wide association study for body weight in Japanese Thoroughbred racehorses clarifies candidate regions on chromosomes 3, 9, 15, and 18.. J Equine Sci 2017;28(4):127-134.
     pmc: PMC5735309pubmed: 29270069doi: 10.1294/jes.28.127google scholar: lookup
268. Tozaki T, Kikuchi M, Kakoi H, Hirota K, Nagata S, Yamashita D, Ohnuma T, Takasu M, Kobayashi I, Hobo S, Manglai D, Petersen JL. Genetic diversity and relationships among native Japanese horse breeds, the Japanese Thoroughbred and horses outside of Japan using genome-wide SNP data.. Anim Genet 2019 Oct;50(5):449-459.
     pubmed: 31282588doi: 10.1111/age.12819google scholar: lookup
269. Treiber KH, Kronfeld DS, Hess TM, Byrd BM, Splan RK, Staniar WB. Evaluation of genetic and metabolic predispositions and nutritional risk factors for pasture-associated laminitis in ponies.. J Am Vet Med Assoc 2006 May 15;228(10):1538-45.
     pubmed: 16677122doi: 10.2460/javma.228.10.1538google scholar: lookup
270. Tsang HG, Rashdan NA, Whitelaw CB, Corcoran BM, Summers KM, MacRae VE. Large animal models of cardiovascular disease.. Cell Biochem Funct 2016 Apr;34(3):113-32.
     pmc: PMC4834612pubmed: 26914991doi: 10.1002/cbf.3173google scholar: lookup
271. Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, Chamberlain A, Cheng H, Crooijmans RP, Delany ME, Finno CJ, Groenen MA, Hayes B, Lunney JK, Petersen JL, Plastow GS, Schmidt CJ, Song J, Watson M. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.. Anim Genet 2016 Oct;47(5):528-33.
     pmc: PMC5082551pubmed: 27453069doi: 10.1111/age.12466google scholar: lookup
272. Valberg SJ, Henry ML, Perumbakkam S, Gardner KL, Finno CJ. An E321G MYH1 mutation is strongly associated with nonexertional rhabdomyolysis in Quarter Horses.. J Vet Intern Med 2018 Sep;32(5):1718-1725.
     pmc: PMC6189380pubmed: 30079499doi: 10.1111/jvim.15299google scholar: lookup
273. Vandenput S, Duvivier DH, Votion D, Art T, Lekeux P. Environmental control to maintain stabled COPD horses in clinical remission: effects on pulmonary function.. Equine Vet J 1998 Mar;30(2):93-6.
     pubmed: 9535063doi: 10.1111/j.2042-3306.1998.tb04466.xgoogle scholar: lookup
274. Vandenput S, Votion D, Duvivier DH, Van Erck E, Anciaux N, Art T, Lekeux P. Effect of a set stabled environmental control on pulmonary function and airway reactivity of COPD affected horses.. Vet J 1998 Mar;155(2):189-95.
     pubmed: 9564273doi: 10.1016/s1090-0233(98)80018-xgoogle scholar: lookup
275. Vander Heyden L, Lejeune JP, Caudron I, Detilleux J, Sandersen C, Chavatte P, Paris J, Deliège B, Serteyn D. Association of breeding conditions with prevalence of osteochondrosis in foals.. Vet Rec 2013 Jan 19;172(3):68.
     pubmed: 23118049doi: 10.1136/vr.101034google scholar: lookup
276. Velie BD, Shrestha M, Franҫois L, Schurink A, Tesfayonas YG, Stinckens A, Blott S, Ducro BJ, Mikko S, Thomas R, Swinburne JE, Sundqvist M, Eriksson S, Buys N, Lindgren G. Using an Inbred Horse Breed in a High Density Genome-Wide Scan for Genetic Risk Factors of Insect Bite Hypersensitivity (IBH).. PLoS One 2016;11(4):e0152966.
     pmc: PMC4829256pubmed: 27070818doi: 10.1371/journal.pone.0152966google scholar: lookup
277. Viklund A, Braam A, Näsholm A, Strandberg E, Philipsson J. Genetic variation in competition traits at different ages and time periods and correlations with traits at field tests of 4-year-old Swedish Warmblood horses.. Animal 2010 May;4(5):682-91.
     pubmed: 22444120doi: 10.1017/s1751731110000017google scholar: lookup
278. Vilà C, Leonard JA, Gotherstrom A, Marklund S, Sandberg K, Liden K, Wayne RK, Ellegren H. Widespread origins of domestic horse lineages.. Science 2001 Jan 19;291(5503):474-7.
     pubmed: 11161199doi: 10.1126/science.291.5503.474google scholar: lookup
279. Viļuma A, Mikko S, Hahn D, Skow L, Andersson G, Bergström TF. Genomic structure of the horse major histocompatibility complex class II region resolved using PacBio long-read sequencing technology.. Sci Rep 2017 Mar 31;7:45518.
     pmc: PMC5374520pubmed: 28361880doi: 10.1038/srep45518google scholar: lookup
280. Wade C.M. Assembly and analysis of the equine genome sequence. In: Equine Genomics (Ed. by Chowdhary B.P.), pp. 103–12. Wiley‐Blackwell, Ames, IA.
281. Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC, Lander ES, Lindblad-Toh K. Genome sequence, comparative analysis, and population genetics of the domestic horse.. Science 2009 Nov 6;326(5954):865-7.
     pmc: PMC3785132pubmed: 19892987doi: 10.1126/science.1178158google scholar: lookup
282. Wallin L, Strandberg E, Philipsson J. Genetic correlations between field test results of Swedish Warmblood Riding Horses as 4‐year‐olds and lifetime performance results in dressage and show jumping. Livestock Production Science 82, 61–71.
283. Wallner B, Piumi F, Brem G, Müller M, Achmann R. Isolation of Y chromosome-specific microsatellites in the horse and cross-species amplification in the genus Equus.. J Hered 2004 Mar-Apr;95(2):158-64.
     pubmed: 15073232doi: 10.1093/jhered/esh020google scholar: lookup
284. Wallner B, Vogl C, Shukla P, Burgstaller JP, Druml T, Brem G. Identification of genetic variation on the horse y chromosome and the tracing of male founder lineages in modern breeds.. PLoS One 2013;8(4):e60015.
     pmc: PMC3616054pubmed: 23573227doi: 10.1371/journal.pone.0060015google scholar: lookup
285. Wallner B, Palmieri N, Vogl C, Rigler D, Bozlak E, Druml T, Jagannathan V, Leeb T, Fries R, Tetens J, Thaller G, Metzger J, Distl O, Lindgren G, Rubin CJ, Andersson L, Schaefer R, McCue M, Neuditschko M, Rieder S, Schlötterer C, Brem G. Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions.. Curr Biol 2017 Jul 10;27(13):2029-2035.e5.
     pubmed: 28669755doi: 10.1016/j.cub.2017.05.086google scholar: lookup
286. Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes.. Nature 2008 Nov 27;456(7221):470-6.
     pmc: PMC2593745pubmed: 18978772doi: 10.1038/nature07509google scholar: lookup
287. Wang W, Wang S, Hou C, Xing Y, Cao J, Wu K, Liu C, Zhang D, Zhang L, Zhang Y, Zhou H. Genome-wide detection of copy number variations among diverse horse breeds by array CGH.. PLoS One 2014;9(1):e86860.
     pmc: PMC3907382pubmed: 24497987doi: 10.1371/journal.pone.0086860google scholar: lookup
288. Warmuth V, Eriksson A, Bower MA, Cañon J, Cothran G, Distl O, Glowatzki-Mullis ML, Hunt H, Luís C, do Mar Oom M, Yupanqui IT, Ząbek T, Manica A. European domestic horses originated in two holocene refugia.. PLoS One 2011 Mar 30;6(3):e18194.
     pmc: PMC3068172pubmed: 21479181doi: 10.1371/journal.pone.0018194google scholar: lookup
289. Warmuth V, Eriksson A, Bower MA, Barker G, Barrett E, Hanks BK, Li S, Lomitashvili D, Ochir-Goryaeva M, Sizonov GV, Soyonov V, Manica A. Reconstructing the origin and spread of horse domestication in the Eurasian steppe.. Proc Natl Acad Sci U S A 2012 May 22;109(21):8202-6.
     pmc: PMC3361400pubmed: 22566639doi: 10.1073/pnas.1111122109google scholar: lookup
290. Weikard R, Altmaier E, Suhre K, Weinberger KM, Hammon HM, Albrecht E, Setoguchi K, Takasuga A, Kühn C. Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos taurus growth and lipid deposition.. Physiol Genomics 2010 Oct;42A(2):79-88.
     pubmed: 20647382doi: 10.1152/physiolgenomics.00120.2010google scholar: lookup
291. Welsh CE, Lewis TW, Blott SC, Mellor DJ, Lam KH, Stewart BD, Parkin TD. Preliminary genetic analyses of important musculoskeletal conditions of Thoroughbred racehorses in Hong Kong.. Vet J 2013 Dec;198(3):611-5.
     pmc: PMC3899015pubmed: 23746478doi: 10.1016/j.tvjl.2013.05.002google scholar: lookup
292. van der Weyden L, Patton EE, Wood GA, Foote AK, Brenn T, Arends MJ, Adams DJ. Cross-species models of human melanoma.. J Pathol 2016 Jan;238(2):152-65.
     pmc: PMC4832391pubmed: 26354726doi: 10.1002/path.4632google scholar: lookup
293. Williamson S.A, Beilharz R.G. Heritabilities of racing performance in Thoroughbreds: a study of Australian data. Journal of Animal Breeding and Genetics‐Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie 113, 505–24.
294. Witkowski L, Cywinska A, Paschalis-Trela K, Crisman M, Kita J. Multiple etiologies of equine recurrent uveitis--A natural model for human autoimmune uveitis: A brief review.. Comp Immunol Microbiol Infect Dis 2016 Feb;44:14-20.
     pubmed: 26851589doi: 10.1016/j.cimid.2015.11.004google scholar: lookup
295. Wittwer C, Hamann H, Rosenberger E, Distl O. Prevalence of osteochondrosis in the limb joints of South German Coldblood horses.. J Vet Med A Physiol Pathol Clin Med 2006 Dec;53(10):531-9.
     pubmed: 17105575doi: 10.1111/j.1439-0442.2006.00881.xgoogle scholar: lookup
296. Wittwer C, Löhring K, Drögemüller C, Hamann H, Rosenberger E, Distl O. Mapping quantitative trait loci for osteochondrosis in fetlock and hock joints and palmar/plantar osseus fragments in fetlock joints of South German Coldblood horses.. Anim Genet 2007 Aug;38(4):350-7.
     pubmed: 17559552doi: 10.1111/j.1365-2052.2007.01610.xgoogle scholar: lookup
297. Woods PS, Robinson NE, Swanson MC, Reed CE, Broadstone RV, Derksen FJ. Airborne dust and aeroallergen concentration in a horse stable under two different management systems.. Equine Vet J 1993 May;25(3):208-13.
     pubmed: 8508749doi: 10.1111/j.2042-3306.1993.tb02945.xgoogle scholar: lookup
298. Wutke S, Sandoval-Castellanos E, Benecke N, Döhle HJ, Friederich S, Gonzalez J, Hofreiter M, Lõugas L, Magnell O, Malaspinas AS, Morales-Muñiz A, Orlando L, Reissmann M, Trinks A, Ludwig A. Decline of genetic diversity in ancient domestic stallions in Europe.. Sci Adv 2018 Apr;4(4):eaap9691.
     pmc: PMC5906072pubmed: 29675468doi: 10.1126/sciadv.aap9691google scholar: lookup
299. Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B. A comparative encyclopedia of DNA elements in the mouse genome.. Nature 2014 Nov 20;515(7527):355-64.
     pmc: PMC4266106pubmed: 25409824doi: 10.1038/nature13992google scholar: lookup
300. Zechner P, Zohman F, Solkner J, Bodo I, Habe F, Marti E, Brem G. Morphological description of the Lipizzan horse population. Livestock Production Science 69, 163–77.
301. Zhang C, Ni P, Ahmad HI, Gemingguli M, Baizilaitibei A, Gulibaheti D, Fang Y, Wang H, Asif AR, Xiao C, Chen J, Ma Y, Liu X, Du X, Zhao S. Detecting the Population Structure and Scanning for Signatures of Selection in Horses (Equus caballus) From Whole-Genome Sequencing Data.. Evol Bioinform Online 2018;14:1176934318775106.
     pmc: PMC5990873pubmed: 29899660doi: 10.1177/1176934318775106google scholar: lookup

Citations

1. Giontella A, Cardinali I, Sarti FM, Silvestrelli M, Lancioni H. Y-Chromosome Haplotype Report among Eight Italian Horse Breeds. Genes (Basel) 2023 Aug 9;14(8).
   doi: 10.3390/genes14081602pubmed: 37628653google scholar: lookup
2. Mutti G, Oteo-Garcia G, Caldon M, da Silva MJF, Minhós T, Cowlishaw G, Gottelli D, Huchard E, Carter A, Martinez FI, Raveane A, Capelli C. Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes. Sci Rep 2023 Aug 24;13(1):13839.
   doi: 10.1038/s41598-023-40931-xpubmed: 37620368google scholar: lookup
3. Sheikh A. Mitochondrial DNA sequencing of Kehilan and Hamdani horses from Saudi Arabia. Saudi J Biol Sci 2023 Sep;30(9):103741.
   doi: 10.1016/j.sjbs.2023.103741pubmed: 37575470google scholar: lookup
4. Peng S, Dahlgren AR, Donnelly CG, Hales EN, Petersen JL, Bellone RR, Kalbfleisch T, Finno CJ. Functional annotation of the animal genomes: An integrated annotation resource for the horse. PLoS Genet 2023 Mar;19(3):e1010468.
   doi: 10.1371/journal.pgen.1010468pubmed: 36862752google scholar: lookup
5. Cardinali I, Giontella A, Tommasi A, Silvestrelli M, Lancioni H. Unlocking Horse Y Chromosome Diversity. Genes (Basel) 2022 Dec 2;13(12).
   doi: 10.3390/genes13122272pubmed: 36553539google scholar: lookup
6. Radovic L, Remer V, Krcal C, Rigler D, Brem G, Rayane A, Driss K, Benamar M, Machmoum M, Piro M, Krischke D, Butler-Wemken IV, Wallner B. Y Chromosome Haplotypes Enlighten Origin, Influence, and Breeding History of North African Barb Horses. Animals (Basel) 2022 Sep 27;12(19).
   doi: 10.3390/ani12192579pubmed: 36230320google scholar: lookup
7. Remer V, Bozlak E, Felkel S, Radovic L, Rigler D, Grilz-Seger G, Stefaniuk-Szmukier M, Bugno-Poniewierska M, Brooks S, Miller DC, Antczak DF, Sadeghi R, Cothran G, Juras R, Khanshour AM, Rieder S, Penedo MC, Waiditschka G, Kalinkova L, Kalashnikov VV, Zaitsev AM, Almarzook S, Reißmann M, Brockmann GA, Brem G, Wallner B. Y-Chromosomal Insights into Breeding History and Sire Line Genealogies of Arabian Horses. Genes (Basel) 2022 Jan 26;13(2).
   doi: 10.3390/genes13020229pubmed: 35205275google scholar: lookup
8. Durward-Akhurst SA, Schaefer RJ, Grantham B, Carey WK, Mickelson JR, McCue ME. Genetic Variation and the Distribution of Variant Types in the Horse. Front Genet 2021;12:758366.
   doi: 10.3389/fgene.2021.758366pubmed: 34925451google scholar: lookup
9. Peng S, Petersen JL, Bellone RR, Kalbfleisch T, Kingsley NB, Barber AM, Cappelletti E, Giulotto E, Finno CJ. Decoding the Equine Genome: Lessons from ENCODE. Genes (Basel) 2021 Oct 27;12(11).
   doi: 10.3390/genes12111707pubmed: 34828313google scholar: lookup
10. Tozaki T, Ohnuma A, Kikuchi M, Ishige T, Kakoi H, Hirota KI, Kusano K, Nagata SI. Rare and common variant discovery by whole-genome sequencing of 101 Thoroughbred racehorses. Sci Rep 2021 Aug 6;11(1):16057.
    doi: 10.1038/s41598-021-95669-1pubmed: 34362995google scholar: lookup
11. Peng S, Bellone R, Petersen JL, Kalbfleisch TS, Finno CJ. Successful ATAC-Seq From Snap-Frozen Equine Tissues. Front Genet 2021;12:641788.
    doi: 10.3389/fgene.2021.641788pubmed: 34220931google scholar: lookup
12. Bugno-Poniewierska M, Raudsepp T. Horse Clinical Cytogenetics: Recurrent Themes and Novel Findings. Animals (Basel) 2021 Mar 16;11(3).
    doi: 10.3390/ani11030831pubmed: 33809432google scholar: lookup
13. Laseca N, Anaya G, Peña Z, Pirosanto Y, Molina A, Demyda Peyrás S. Impaired Reproductive Function in Equines: From Genetics to Genomics. Animals (Basel) 2021 Feb 3;11(2).
    doi: 10.3390/ani11020393pubmed: 33546520google scholar: lookup
14. Kvist L, Honka J, Niskanen M, Liedes O, Aspi J. Selection in the Finnhorse, a native all-around horse breed. J Anim Breed Genet 2021 Mar;138(2):188-203.
    doi: 10.1111/jbg.12524pubmed: 33226152google scholar: lookup
15. Klumplerova M, Splichalova P, Oppelt J, Futas J, Kohutova A, Musilova P, Kubickova S, Vodicka R, Orlando L, Horin P. Genetic diversity, evolution and selection in the major histocompatibility complex DRB and DQB loci in the family Equidae. BMC Genomics 2020 Sep 30;21(1):677.
    doi: 10.1186/s12864-020-07089-6pubmed: 32998693google scholar: lookup
16. Ghosh S, Davis BW, Rosengren M, Jevit MJ, Castaneda C, Arnold C, Jaxheimer J, Love CC, Varner DD, Lindgren G, Wade CM, Raudsepp T. Characterization of A Homozygous Deletion of Steroid Hormone Biosynthesis Genes in Horse Chromosome 29 as A Risk Factor for Disorders of Sex Development and Reproduction. Genes (Basel) 2020 Feb 27;11(3).
    doi: 10.3390/genes11030251pubmed: 32120906google scholar: lookup
17. Kingsley NB, Kern C, Creppe C, Hales EN, Zhou H, Kalbfleisch TS, MacLeod JN, Petersen JL, Finno CJ, Bellone RR. Functionally Annotating Regulatory Elements in the Equine Genome Using Histone Mark ChIP-Seq. Genes (Basel) 2019 Dec 18;11(1).
    doi: 10.3390/genes11010003pubmed: 31861495google scholar: lookup
18. Jafari H, Abebe BK, Cong L, Ahmed Z, Zhaofei W, Sun M, Muhatai G, Chuzhao L, Dang R. Review: Genomic insights into the adaptive traits and stress resistance in modern horses. Stress Biol 2026 Jan 12;6(1):5.
    doi: 10.1007/s44154-025-00274-1pubmed: 41521281google scholar: lookup
19. Chessari G, Reich P, Criscione A, Falker-Gieske C, Mastrangelo S, Tumino S, Bordonaro S, Marletta D, Tetens J. Comparison between SNP array and imputed data to estimate population structure and ROH hotspots in horse breeds. BMC Genomics 2025 Nov 29;26(1):1086.
    doi: 10.1186/s12864-025-12256-8pubmed: 41318401google scholar: lookup
20. Lewczuk D, Borowska A, Andruszkiewicz J, Bagnicka E. Comparative Analysis of the Stallion Field Performance Test at Different Training Stages and Horse Age. Animals (Basel) 2025 Nov 13;15(22).
    doi: 10.3390/ani15223289pubmed: 41301997google scholar: lookup
21. Luštrek B, Šimon M, Turk K, Bogičević S, Potočnik K. Comparing Genomic and Pedigree Inbreeding Coefficients in the Slovenian Lipizzan Horse as a Case Study for Small Closed Populations. Animals (Basel) 2025 Sep 23;15(19).
    doi: 10.3390/ani15192774pubmed: 41096369google scholar: lookup
22. Steensma MJ, Ducro BJ, Dibbits B, Doekes HP, van Schipstal JGC, Kalblfleisch T, Groenen MAM, Derks MFL. High-quality, haplotype-resolved reference genomes of the Dutch warmblood horse and Friesian horse using trio binning. BMC Genomics 2025 Sep 1;26(1):790.
    doi: 10.1186/s12864-025-11985-0pubmed: 40890628google scholar: lookup
23. Ryan CA, Berry DP, Bugno-Poniewierska M, Burke MK, Raudsepp T, Egan S, Doyle JL. Two Cases of Chromosome 27 Trisomy in Horses Detected Using Illumina BeadChip Genotyping. Animals (Basel) 2025 Jun 22;15(13).
    doi: 10.3390/ani15131842pubmed: 40646741google scholar: lookup
24. Liu H, Zhu B, Wang T, Dong Y, Ju Y, Li Y, Su W, Zhang R, Dong S, Wang H, Zhou Y, Zhu Y, Wang L, Zhang Z, Zhao P, Zhang S, Guo R, A E, Zhang Y, Liu X, Tamate HB, Liang Q, Ma D, Xing X. Population genomics of sika deer reveals recent speciation and genetic selective signatures during evolution and domestication. BMC Genomics 2025 Apr 11;26(1):364.
    doi: 10.1186/s12864-025-11541-wpubmed: 40217144google scholar: lookup
25. An T, Dugarjaviin M, Han H. Expression and Analysis of TBX3 Gene in the Skin from Three Locations on Dun Mongolian Bider Horse. Genes (Basel) 2024 Dec 11;15(12).
    doi: 10.3390/genes15121589pubmed: 39766856google scholar: lookup
26. Lovász L, Sommer-Trembo C, Barth JMI, Scasta JD, Grancharova-Hill R, Lemoine RT, Kerekes V, Merckling L, Bouskila A, Svenning JC, Fages A. Rewilded horses in European nature conservation - a genetics, ethics, and welfare perspective. Biol Rev Camb Philos Soc 2025 Feb;100(1):407-427.
    doi: 10.1111/brv.13146pubmed: 39279124google scholar: lookup
27. Giontella A, Silvestrelli M, Cocciolone A, Pieramati C, Sarti FM. Breeding Value Estimation Based on Morphological Evaluation of the Maremmano Horse Population through Factor Analysis. Animals (Basel) 2024 Jul 31;14(15).
    doi: 10.3390/ani14152232pubmed: 39123761google scholar: lookup
28. Liu X, Peng Y, Zhang X, Wang X, Chen W, Kou X, Liang H, Ren W, Khan MZ, Wang C. Coloration in Equine: Overview of Candidate Genes Associated with Coat Color Phenotypes. Animals (Basel) 2024 Jun 17;14(12).
    doi: 10.3390/ani14121802pubmed: 38929421google scholar: lookup
29. Witkowska-Piłaszewicz O, Malin K, Dąbrowska I, Grzędzicka J, Ostaszewski P, Carter C. Immunology of Physical Exercise: Is Equus caballus an Appropriate Animal Model for Human Athletes?. Int J Mol Sci 2024 May 10;25(10).
    doi: 10.3390/ijms25105210pubmed: 38791248google scholar: lookup
30. De Coster T, Zhao Y, Tšuiko O, Demyda-Peyrás S, Van Soom A, Vermeesch JR, Smits K. Genome-wide equine preimplantation genetic testing enabled by simultaneous haplotyping and copy number detection. Sci Rep 2024 Jan 23;14(1):2003.
    doi: 10.1038/s41598-023-48103-7pubmed: 38263320google scholar: lookup
31. Hlongwane NL, Dzomba EF, Hadebe K, van der Nest MA, Pierneef R, Muchadeyi FC. Identification of Signatures of Positive Selection That Have Shaped the Genomic Landscape of South African Pig Populations. Animals (Basel) 2024 Jan 12;14(2).
    doi: 10.3390/ani14020236pubmed: 38254405google scholar: lookup
32. Tang X, Zhu B, Ren R, Chen B, Li S, Gu J. Genome-wide copy number variation detection in a large cohort of diverse horse breeds by whole-genome sequencing. Front Vet Sci 2023;10:1296213.
    doi: 10.3389/fvets.2023.1296213pubmed: 38076560google scholar: lookup
33. Bredemeyer KR, Hillier L, Harris AJ, Hughes GM, Foley NM, Lawless C, Carroll RA, Storer JM, Batzer MA, Rice ES, Davis BW, Raudsepp T, O'Brien SJ, Lyons LA, Warren WC, Murphy WJ. Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution. Nat Genet 2023 Nov;55(11):1953-1963.
    doi: 10.1038/s41588-023-01548-ypubmed: 37919451google scholar: lookup
34. Cappelletti E, Piras FM, Sola L, Santagostino M, Petersen JL, Bellone RR, Finno CJ, Peng S, Kalbfleisch TS, Bailey E, Nergadze SG, Giulotto E. The localization of centromere protein A is conserved among tissues. Commun Biol 2023 Sep 21;6(1):963.
    doi: 10.1038/s42003-023-05335-7pubmed: 37735603google scholar: lookup
35. Finno CJ. Science-in-brief: Genomic and transcriptomic approaches to the investigation of equine diseases. Equine Vet J 2022 Mar;54(2):444-448.
    doi: 10.1111/evj.13549pubmed: 35133024google scholar: lookup