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Topic:Genes

Genes in horses are segments of DNA that encode the biological instructions necessary for the development, functioning, and reproduction of equine species. These genetic sequences influence a wide range of traits, including coat color, speed, endurance, and susceptibility to diseases. Genetic research in horses focuses on identifying specific genes and genetic markers associated with these traits, as well as understanding the inheritance patterns and genetic diversity within and between horse breeds. Studies in equine genetics contribute to breeding programs, disease prevention strategies, and the overall understanding of horse biology. This page compiles peer-reviewed research studies and scholarly articles that explore the identification, function, and implications of genes in equine health and performance.
A polymorphism within the equine CRISP3 gene is associated with stallion fertility in Hanoverian warmblood horses.
Animal genetics    April 13, 2007   Volume 38, Issue 3 259-264 doi: 10.1111/j.1365-2052.2007.01594.x
Hamann H, Jude R, Sieme H, Mertens U, Töpfer-Petersen E, Distl O, Leeb T.Fertility of stallions is of high economic importance, especially for large breeding organisations and studs. Breeding schemes with respect to fertility traits and selection of stallions at an early stage may be improved by including molecular genetic markers associated with traits. The genes coding for equine cysteine-rich secretory proteins (CRISPs) are promising candidate genes because previous studies have shown that CRISPs play a role in the fertilising ability of male animals. We have previously characterised the three equine CRISP genes and identified a non-synonymous polymorphism in th...
MCT1 and CD147 gene polymorphisms in standardbred horses.
Equine veterinary journal. Supplement    April 4, 2007   Issue 36 322-325 doi: 10.1111/j.2042-3306.2006.tb05561.x
Reeben M, Koho NM, Raekallio M, Hyyppä S, Pösö AR.Transport of lactate across membranes is facilitated by proton-monocarboxylate transporters (MCT). The most widely distributed isoform is MCT1, which needs an ancillary protein CD147. Studies on erythrocytes have shown that high activity of MCT1 is inherited as the dominant allele and that activity is regulated through CD147. Mutations of human MCT1 have been described that appear to impair lactate transport in muscles and cause exertional rhabdomyolysis. There are no reports of this potential relationship in the horse. Objective: To obtain sequences of equine MCT1 and CD147 to examine differe...
Gene expression profiling in equine muscle tissues using mouse cDNA microarrays.
Equine veterinary journal. Supplement    April 4, 2007   Issue 36 359-364 doi: 10.1111/j.2042-3306.2006.tb05569.x
Mucher E, Jayr L, Rossignol F, Amiot F, Gidrol X, Barrey E.Progress could be achieved by using microarrays to understand metabolic adaptations and disorders in equine muscle in response to exercise. Objective: To test the feasibility of using mouse cDNA microarrays to analyse gene expression profile in normal equine muscles. Methods: Muscular biopsies of dorsal gluteus medius and longissimus lumborum were done in 4 healthy Standardbreds. Total RNA was extracted from the muscle samples. The concentration and quality of RNA were measured before and after amplification. Gene expression profiles were measured using mouse cDNA microarrays including 15,264 ...
Gene expression profiling in blood cells of endurance horses completing competition or disqualified due to metabolic disorder.
Equine veterinary journal. Supplement    April 4, 2007   Issue 36 43-49 doi: 10.1111/j.2042-3306.2006.tb05511.x
Barrey E, Mucher E, Robert C, Amiot F, Gidrol X.Genomics using cDNA microarrays could provide useful information about physiological adaptations and metabolic disorders in endurance horses. Objective: In order to show that genes are modulated in leucocytes in relationship with performance and clinical status of the horses, gene expression in leucocytes, haematological and biochemical parameters were compared between successful and disqualified endurance horses. Methods: Blood samples were collected at rest (TO) and just after a 140-160 km endurance race (T1) in 2 groups of horses: 10 continuing successful (S) and 10 disqualified horses stop...
Molecular genetic analysis of the ATP2A2 gene as candidate for chronic pastern dermatitis in German draft horses.
The Journal of heredity    March 29, 2007   Volume 98, Issue 3 267-271 doi: 10.1093/jhered/esm004
Mömke S, Distl O.Chronic pastern dermatitis predominantly affects draft horses, and this condition is characterized by hyperkeratotic-hyperplastic dermal alterations. Chronic pastern dermatitis resembles the acral-hemorrhagic phenotype of Darier-White disease in humans. The ATP2A2 gene has been shown to be responsible for human Darier-White. Thus, we chose ATP2A2 on equine chromosome 8 (ECA8) as candidate for chronic pastern dermatitis in coldblood horses. A linkage analysis was performed in 10 paternal half-sib families consisting of 85 German coldblood horses using a microsatellite closely linked to ATP2A2, ...
Classes and crossreactivity of proteinases in the excretory-secretory products of Caenorhabditis elegans.
Journal of helminthology    March 27, 2007   Volume 81, Issue 1 93-99 doi: 10.1017/S0022149X0724725X
Nic An Ultaigh S, Ryan MF.Proteinases released during the in vitro maintenance of asynchronous cultures of the free-living nematode Caenorhabditis elegans were characterized on the basis of subunit composition, fluorogenic substrate specificity, inhibitor sensitivity and pH optima. Cysteine proteinases are present in the excretory-secretory products (ESP) as indicated by the hydrolysis of cathepsin fluorogenic substrates and confirmed by immunoblotting. Serine proteinases were predominant as indicated by substrate gel analysis and inhibitor studies. The presence of metallo-proteinases was also indicated by inhibitor st...
Chromosomal assignment of the two candidate genes (EGFR, CLCA1) for equine recurrent airway obstruction (RAO) by FISH and RH mapping.
Hereditas    March 17, 2007   Volume 143, Issue 2006 138-141 doi: 10.1111/j.2006.0018-0661.01947.x
Klukowska-Rötzler J, Bugno M, Sander P, Slota E, Dolf G, Chowdhary BP, Leeb T, Gerber V.No abstract available
A 10-base-pair deletion in the gene encoding platelet glycoprotein IIb associated with Glanzmann thrombasthenia in a horse.
Journal of veterinary internal medicine    March 7, 2007   Volume 21, Issue 1 196-198 doi: 10.1892/0891-6640(2007)21[196:abditg]2.0.co;2
Christopherson PW, van Santen VL, Livesey L, Boudreaux MK.No abstract available
Heaves, genes, nerves, and Victorians.
Journal of veterinary internal medicine    March 7, 2007   Volume 21, Issue 1 1-2 
Robinson NE, Wilson MR.No abstract available
Vaccine potential of novel surface exposed and secreted proteins of Streptococcus equi.
Vaccine    February 26, 2007   Volume 25, Issue 30 5583-5590 doi: 10.1016/j.vaccine.2007.02.040
Timoney JF, Qin A, Muthupalani S, Artiushin S.Streptococcus equi, a clonal descendent of an ancestral S. zooepidemicus, causes equine strangles, a highly contagious purulent lymphadenitis of the head and neck. The aim of this study was to evaluate as vaccine components novel surface exposed or secreted S. equi proteins identified in an expression gene library with sera from resistant horses. Six proteins expressed by S. equi CF32 but not by S. zooepidemicus 631 were used to vaccinate one group of eight ponies. A second pony group was immunized with five adhesin and other proteins encoded by genes of Linkage Gr 1. All ponies made strong se...
Whole-genome linkage disequilibrium screening for complex traits in horses.
Molecular genetics and genomics : MGG    February 22, 2007   Volume 277, Issue 6 663-672 doi: 10.1007/s00438-007-0216-2
Tozaki T, Hirota K, Hasegawa T, Ishida N, Tobe T.The identification of candidate genes for significant traits is crucial. In this study, we developed and tested effective and systematic methods based on linkage disequilibrium (LD) for the identification of candidate regions for genes with Mendelian inheritance and those associated with complex traits. Our approach entailed the combination of primary screening using pooled DNA samples based on DeltaTAC, secondary screening using an individual typing method and tertiary screening using a permutation test based on the differences in the haplotype frequency between two neighbouring microsatellit...
In vivo expression of and cell-mediated immune responses to the plasmid-encoded virulence-associated proteins of Rhodococcus equi in foals.
Clinical and vaccine immunology : CVI    February 14, 2007   Volume 14, Issue 4 369-374 doi: 10.1128/CVI.00448-06
Jacks S, Giguère S, Prescott JF.Rhodococcus equi is a facultative intracellular pathogen that causes pneumonia in foals but does not induce disease in adult horses. Virulence of R. equi depends on the presence of a large plasmid, which encodes a family of seven virulence-associated proteins (VapA and VapC to VapH). Eradication of R. equi from the lungs depends on gamma interferon (IFN-gamma) production by T lymphocytes. The objectives of the present study were to determine the relative in vivo expression of the vap genes of R. equi in the lungs of infected foals, to determine the recall response of bronchial lymph node (BLN)...
Identifying the future needs for long-term USDA efforts in agricultural animal genomics.
International journal of biological sciences    February 10, 2007   Volume 3, Issue 3 185-191 doi: 10.7150/ijbs.3.185
Green RD, Qureshi MA, Long JA, Burfening PJ, Hamernik DL.Agricultural animal research has been immensely successful over the past century in developing technology and methodologies that have dramatically enhanced production efficiency of the beef, dairy, swine, poultry, sheep, and aquaculture industries. In the past two decades, molecular biology has changed the face of agricultural animal research, primarily in the arena of genomics and the relatively new offshoot areas of functional genomics, proteomics, transcriptomics, metabolomics and metagenomics. Publication of genetic and physical genome maps in the past 15 years has given rise to the possib...
Genetic typing of equine arteritis virus isolates from Argentina.
Virus genes    February 9, 2007   Volume 35, Issue 2 313-320 doi: 10.1007/s11262-007-0081-4
Echeverría MG, Díaz S, Metz GE, Serena MS, Panei CJ, Nosetto E.We report the nucleotide sequence and genetic diversity of four Equine Arteritis Virus (EAV) ORF 5 and 6 from Argentina isolates, obtained from asymptomatic virus-shedding stallions. Nucleic acid recovered from the isolates were amplified by RT-PCR and sequenced. Nucleotide and deduced amino acid sequences from the Argentine isolates were compared with 17 sequences available from the GenBank. Phylogenetic analysis revealed that the Argentine isolates grouped together in a definite cluster near European strains. Despite the greater genetic variability among ORF 5 from different isolates and str...
Multiplex real-time PCR for the detection and differentiation of equid herpesvirus 1 (EHV-1) and equid herpesvirus 4 (EHV-4).
Veterinary microbiology    February 9, 2007   Volume 123, Issue 1-3 93-103 doi: 10.1016/j.vetmic.2007.02.004
Diallo IS, Hewitson G, Wright LL, Kelly MA, Rodwell BJ, Corney BG.A multiplex real-time PCR was designed to detect and differentiate equid herpesvirus 1 (EHV-1) and equid herpesvirus 4 (EHV-4). The PCR targets the glycoprotein B gene of EHV-1 and EHV-4. Primers and probes were specific to each equine herpesvirus type and can be used in monoplex or multiplex PCRs, allowing the differentiation of these two closely related members of the Alphaherpesvirinae. The two probes were minor-groove binding probes (MGB) labelled with 6-carboxy-fluorescein (FAM) and VIC for detection of EHV-1 and EHV-4, respectively. Ten EHV-1 isolates, six EHV-1 positive clinical samples...
Chromosomal assignment of five equine HTR genes by FISH and RH mapping.
Animal genetics    January 30, 2007   Volume 38, Issue 1 83-84 doi: 10.1111/j.1365-2052.2006.01546.x
Prause A, Guionaud CT, Klukowska-Rötzler J, Giulotto E, Magnani E, Chowdhary BP, Philipp U, Leeb T, Mevissen M.No abstract available
Chromosomal assignments and sequences for the equine core circadian clock genes.
Animal genetics    January 30, 2007   Volume 38, Issue 1 84-85 doi: 10.1111/j.1365-2052.2006.01549.x
Murphy BA, Lear TL, Adelson DL, Fitzgerald BP.No abstract available
Two SNPs in the SILV gene are associated with silver coat colour in ponies.
Animal genetics    January 30, 2007   Volume 38, Issue 1 1-6 doi: 10.1111/j.1365-2052.2006.01553.x
Reissmann M, Bierwolf J, Brockmann GA.In horses, a pigment dilution acting only on black eumelanin is the so-called silver coat colour, which is characterized by a chocolate-to-reddish body with a white mane and tail. Using information from other species, we focused our study on SILV as a possible candidate gene for the equine silver phenotype. A 1559-bp genomic fragment was sequenced in 24 horses, and five SNPs were detected. Two of the five SNPs (DQ665301:g.697A>T and DQ665301:g.1457C>T) were genotyped in 112 horses representing eight colour phenotypes. Both mutations were completely associated with the silver phenotype: all eum...
Molecular characterization of tumor necrosis alpha-induced protein 6 and its human chorionic gonadotropin-dependent induction in theca and mural granulosa cells of equine preovulatory follicles.
Reproduction (Cambridge, England)    January 25, 2007   Volume 133, Issue 1 135-145 doi: 10.1530/rep.1.01200
Sayasith K, Doré M, Sirois J.The preovulatory rise in gonadotropins causes an expansion of the cumulus-oocyte complex, a process requiring the induction of several genes. The objectives of this study were to clone the equine tumor necrosis factor alpha-induced protein 6 (TNFAIP6), and investigate its regulation in equine follicles during human chorionic gonadotropin (hCG)-induced ovulation. The isolation of the equine TNFAIP6 cDNA revealed that it contains an open reading frame of 834 bp (including the stop codon), encoding a predicted 277 amino acid protein that is highly similar (91-93% identity) to known mammalian homo...
Neonatal growth cartilage: equine tissue specific gene expression.
Biochemical and biophysical research communications    January 23, 2007   Volume 354, Issue 4 975-980 doi: 10.1016/j.bbrc.2007.01.074
Johannessen MK, Skretting G, Ytrehus B, Røed KH.Endochondral bone formation is an important process in development and growth of the skeleton; still many of the mechanisms of growth cartilage remain unknown. The aim of this study was to identify genes specifically expressed in growth cartilage by constructing a subtraction cDNA library of the articular-epiphyseal cartilage complex from neonatal foal. Two hundred and eighty-four differently expressed clones, representing five novel and 37 known genes, were detected by subtraction hybridization. The tissue specificity of these genes was verified by reverse Northern analysis, and tissue distri...
Lactoferrin, a glycoprotein with immunomodulatory and mast cell stabilising properties, in skin of horses suffering from Culicoides hypersensitivity.
Research in veterinary science    January 11, 2007   Volume 83, Issue 2 165-170 doi: 10.1016/j.rvsc.2006.11.007
Kolm G, Knapp E, Wagner R, Klein D.Lactoferrin (LF), a glycogen of the transferrin family with anti-bacterial and immunomodulatory properties, is expressed in various secretions and tissues. Cutaneous LF serves as a mast cell stabilising compound, modulates T cell activity and is found during IgE-mediated late phase reactions at allergen challenged sites. Culicoides hypersensitivity (CHS) in horses is a common IgE-mediated allergic dermatitis, characterised by an early and late phase cutaneous reaction upon allergen challenge. The aim of the study presented here was to examine whether LF mRNA expression in skin biopsies from ho...
Improved resolution of the comparative horse-human map: investigating markers with in silico and linkage mapping approaches.
Gene    January 8, 2007   Volume 392, Issue 1-2 181-186 doi: 10.1016/j.gene.2006.12.018
Tozaki T, Swinburne J, Hirota K, Hasegawa T, Ishida N, Tobe T.Genetic maps are extremely important tools for tracing the genes that govern economically significant traits, and microsatellites are a significant component of these. In this study, we isolated 2346 novel horse microsatellites as resources for the construction of high-density horse genetic maps. Of these 2346 markers, 339 (14.5%) horse sequences showed sequence homology to DNA sequences in the human genome, demonstrating that microsatellites as type II markers are valuable resources for developing linkage maps and that they have a potential equal to that of type I markers for developing compa...
Expression of cyclooxygenase-1 and -2 in naturally occurring squamous cell carcinomas in horses.
American journal of veterinary research    January 4, 2007   Volume 68, Issue 1 76-80 doi: 10.2460/ajvr.68.1.76
Elce YA, Orsini JA, Blikslager AT.To assess expression of cyclooxygenase (COX)-1 and -2 in naturally occurring squamous cell carcinomas (SCCs) and the analogous normal tissues in horses. Methods: Tissue samples collected from 3 conjunctival, 2 vulvar, 4 preputial, and 5 penile SCCs during surgical excision in 14 horses and from corresponding body regions (conjunctiva [n = 5 horses], vulva [2], prepuce [3], and penis [3]) in 5 horses euthanized for reasons unrelated to neoplasia. Methods: Tissue samples were snap frozen in liquid nitrogen and stored at -80 degrees C until analysis. Protein was extracted from the frozen tissues,...
Mutation and virulence assessment of chromosomal genes of Rhodococcus equi 103. Pei Y, Parreira V, Nicholson VM, Prescott JF.Rhodococcus equi can cause severe or fatal pneumonia in foals as well as in immunocompromised animals and humans. Its ability to persist in macrophages is fundamental to how it causes disease, but the basis of this is poorly understood. To examine further the general application of a recently developed system of targeted gene mutation and to assess the importance of different genes in resistance to innate immune defenses, we disrupted the genes encoding high-temperature requirement A (htrA), nitrate reductase (narG), peptidase D (pepD), phosphoribosylaminoimidazole-succinocarboxamide synthase ...
Acute systemic inflammation transiently synchronizes clock gene expression in equine peripheral blood.
Brain, behavior, and immunity    December 15, 2006   Volume 21, Issue 4 467-476 doi: 10.1016/j.bbi.2006.11.002
Murphy BA, Vick MM, Sessions DR, Cook RF, Fitzgerald BP.Peripheral clocks receive timing signals from the master mammalian pacemaker in the suprachiasmatic nucleus (SCN) and function to adaptively anticipate daily changes that influence local physiology. Evidence suggests that peripheral immune activation may act as a resetting signal for circadian clocks in peripheral tissues. We wished to investigate whether acute systemic inflammation could synchronize clock gene expression in equine peripheral blood, a tissue that does not normally oscillate in this species. We report that in vivo administration of lipopolysaccharide (LPS) results in significan...
Detection of bovine papillomavirus type 1 genomes and viral gene expression in equine inflammatory skin conditions.
Virus research    November 30, 2006   Volume 124, Issue 1-2 245-249 doi: 10.1016/j.virusres.2006.10.012
Yuan Z, Philbey AW, Gault EA, Campo MS, Nasir L.Papillomaviruses are normally strictly species-specific and even under experimental conditions do not usually infect any other host than the natural host. The only documented reports of natural papillomavirus cross-species infection are of BPV-1/BPV-2, which can infect horses and induce equine sarcoids. BPV DNA has not been detected in non-sarcoid equine tumours or equine papillomas, but its presence has been reported in some cases of equine dermatitis. In the present study, we show that equine inflammatory skin conditions harbour episomal circular double stranded BPV-1 genomes, with copy numb...
Diversity in Indian equine rotaviruses: identification of genotype G10,P6[1] and G1 strains and a new VP7 genotype (G16) strain in specimens from diarrheic foals in India.
Journal of clinical microbiology    November 29, 2006   Volume 45, Issue 3 972-978 doi: 10.1128/JCM.01696-06
Gulati BR, Deepa R, Singh BK, Rao CD.Rotaviruses causing severe diarrhea in foals in two organized farms in northern India, during the period from 2003 to 2005, were characterized by electropherotyping, serotyping, and sequence analysis of the genes encoding the outer capsid proteins. Of 137 specimens, 47 (34.31%) were positive for rotavirus and exhibited at least five different electropherotypes (E), E1 to E5. Strains belonging to different electropherotypes exhibited either a different serotype/genotype specificity or a lack of reactivity to typing monoclonal antibodies (MAbs) used in this study. Strains belonging to E1, E2, an...
Analysis of peripheral blood mononuclear cells gene expression in endurance horses by cDNA-AFLP technique.
Research in veterinary science    November 13, 2006   Volume 82, Issue 3 335-343 doi: 10.1016/j.rvsc.2006.08.009
Cappelli K, Verini-Supplizi A, Capomaccio S, Silvestrelli M.The knowledge of molecular mechanisms of stress response in athlete horses can allow us to plan an appropriate and high-grade training to obtain better performance and to preserve horse welfare. It is well known that excessive muscular exercise can lead to a number of responses which may be associated with modification of the mRNA levels for a number of metabolic genes such as those involved in the immune response. In the present study cDNA-AFLP technique was applied to Arab endurance horses under stressing conditions to visualise variations of transcriptional profiles; 49 transcript derived f...
Differential expression of calcineurin and SR Ca2+ handling proteins in equine muscle fibers during early postnatal growth.
The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society    November 13, 2006   Volume 55, Issue 3 247-254 doi: 10.1369/jhc.6A7039.2006
Eizema K, van der Wal DE, van den Burg MM, de Jonge HW, Everts ME.During early postnatal development, the myosin heavy chain (MyHC) expression pattern in equine gluteus medius muscle shows adaptation to movement and load,resulting in a decrease in the number of fast MyHC fibers and an increase in the number of slow MyHC fibers. In the present study we correlated the expression of MyHC isoforms to the expression of sarcoplasmic(endo)reticulum Ca2+-ATPase 1 and 2a (SERCA), phospholamban (PLB), calcineurin A (CnA), and calcineurin B (CnB). Gluteus medius muscle biopsies were taken at 0, 2, 4, and 48 weeks and analyzed using immunofluorescence. Both SERCA isofor...
Strategies for construction of luteinizing hormone beta subunit analogs with carboxyl terminal extensions in non-primate, non-equid mammalian species.
Molecular and cellular endocrinology    November 7, 2006   Volume 260-262 205-211 doi: 10.1016/j.mce.2005.11.054
Ben-Menahem D, Grotjan HE.Chorionic gonadotropins (CG) are unique because they have a carboxyl terminal peptide (CTP) extension on their beta subunits that prolongs circulatory survival. CGbeta genes from the human being and horse have evolved from ancestral luteinizing hormone (LH) beta genes by different pathways that involve deletions that change the reading frames and yield a CTP. Here we further review our previous analysis, aimed at determining whether LHbeta genes in non-primate, non-equid species inherently possess DNA sequences that encode CTP-like domains. In multiple mammalian species, simple frame-shift mut...
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