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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Cancer–blame it all on viruses! Bladder tumours in cattle and sarcoids in horses may help us understand the relationship between some cancers and viruses.
Veterinary journal (London, England : 1997)    March 7, 2007   Volume 174, Issue 3 456-459 doi: 10.1016/j.tvjl.2006.12.017
Knottenbelt DC.No abstract available
Equine learning behaviour: the importance of evolutionary and ecological approach in research.
Behavioural processes    March 6, 2007   Volume 76, Issue 1 40-60 doi: 10.1016/j.beproc.2006.09.019
Sigurjónsdóttir H.No abstract available
Equine learning behaviour: common knowledge and systematic research.
Behavioural processes    March 4, 2007   Volume 76, Issue 1 24-60 doi: 10.1016/j.beproc.2006.12.009
Cooper JJ.No abstract available
Color vision in horses (Equus caballus): deficiencies identified using a pseudoisochromatic plate test.
Journal of comparative psychology (Washington, D.C. : 1983)    February 28, 2007   Volume 121, Issue 1 65-72 doi: 10.1037/0735-7036.121.1.65
Hanggi EB, Ingersoll JF, Waggoner TL.In the past, equine color vision was tested with stimuli composed either of painted cards or photographic slides or through physiological testing using electroretinogram flicker photometry. Some studies produced similar results, but others did not, demonstrating that there was not yet a definitive answer regarding color vision in horses (Equus caballus). In this study, a pseudoisochromatic plate test--which is highly effective in testing color vision both in small children and in adult humans--was used for the first time on a nonhuman animal. Stimuli consisted of different colored dotted circl...
Development and characterization of an infectious cDNA clone of the virulent Bucyrus strain of Equine arteritis virus.
The Journal of general virology    February 28, 2007   Volume 88, Issue Pt 3 918-924 doi: 10.1099/vir.0.82415-0
Balasuriya UBR, Snijder EJ, Heidner HW, Zhang J, Zevenhoven-Dobbe JC, Boone JD, McCollum WH, Timoney PJ, MacLachlan NJ.Strains of Equine arteritis virus (EAV) differ in the severity of the disease that they induce in horses. Infectious cDNA clones are potentially useful for identification of genetic determinants of EAV virulence; to date, two clones have been derived from a cell culture-adapted variant of the original (Bucyrus) isolate of EAV, and it has previously been shown that recombinant virus derived from one of these (rEAV030) is attenuated in horses. A complete cDNA copy of the genome of the virulent Bucyrus strain of EAV has now been assembled into a plasmid vector. In contrast to rEAV030, recombinant...
Reorganization of immobilized horse and yeast cytochrome c induced by pH changes or nitric oxide binding.
Langmuir : the ACS journal of surfaces and colloids    February 24, 2007   Volume 23, Issue 7 3832-3839 doi: 10.1021/la062774k
Groot MT, Merkx M, Koper MT.The redox properties of horse and yeast cytochrome c electrostatically immobilized on carboxylic acid-terminated self-assembled monolayers (SAMs) have been determined over a broad pH range (pH 3.5-8) in the absence and presence of nitric oxide. Below pH 6, both proteins exhibit comparable midpoint potentials, coverages, and electron-transfer rate constants, which suggests that they are adsorbed on the SAM in a similar fashion. Above pH 6, a sharp decrease in electron-transfer rate constants is observed for immobilized yeast cytochrome c, which is indicative of a change in the electron tunnelin...
Whole-genome linkage disequilibrium screening for complex traits in horses.
Molecular genetics and genomics : MGG    February 22, 2007   Volume 277, Issue 6 663-672 doi: 10.1007/s00438-007-0216-2
Tozaki T, Hirota K, Hasegawa T, Ishida N, Tobe T.The identification of candidate genes for significant traits is crucial. In this study, we developed and tested effective and systematic methods based on linkage disequilibrium (LD) for the identification of candidate regions for genes with Mendelian inheritance and those associated with complex traits. Our approach entailed the combination of primary screening using pooled DNA samples based on DeltaTAC, secondary screening using an individual typing method and tertiary screening using a permutation test based on the differences in the haplotype frequency between two neighbouring microsatellit...
Molecular basis of resistance to macrolides and lincosamides among staphylococci and streptococci from various animal sources collected in the resistance monitoring program BfT-GermVet.
International journal of antimicrobial agents    February 20, 2007   Volume 29, Issue 5 528-535 doi: 10.1016/j.ijantimicag.2006.12.016
Lüthje P, Schwarz S.In this study, erythromycin- and/or clindamycin-resistant isolates among 248 coagulase-positive and coagulase-variable staphylococci and 500 streptococci, collected all over Germany during 2004-2006 in the resistance monitoring program BfT-GermVet, were investigated for their genetic basis of macrolide and/or lincosamide resistance. Staphylococci were sampled from various disease conditions of dogs/cats or pigs, whereas streptococci were from dogs/cats, pigs or horses. Resistant staphylococci were further identified biochemically to species and subspecies level and tested for the resistance ge...
Desialylation of core type 1 O-glycan in the equine embryonic capsule coincides with immobilization of the conceptus in the uterus.
Carbohydrate research    February 17, 2007   Volume 342, Issue 8 1110-1115 doi: 10.1016/j.carres.2007.02.016
Arar S, Chan KH, Quinn BA, Waelchli RO, Hayes MA, Betteridge KJ, Monteiro MA.During the second and third weeks of pregnancy, the equine conceptus expands rapidly while it is enclosed within a glycan capsule. Around day 16 of gestation, the conceptus loses its mobility in the uterus by a process termed 'fixation', coinciding with various changes in the capsule. Here, we compared the structure of the carbohydrate moieties expressed by the capsule during pre- and post-fixation periods. The glycan structures were studied by chemical analyses in combination with mass spectrometry. Capsule material from conceptuses collected before fixation (days 13-16) was observed to carry...
Telogen defluxion associated with hypersensitivity causing alopecia in a horse.
Australian veterinary journal    February 16, 2007   Volume 85, Issue 1-2 56-58 doi: 10.1111/j.1751-0813.2006.00086.x
Jubb TF, Graydon RJ.No abstract available
Identifying the future needs for long-term USDA efforts in agricultural animal genomics.
International journal of biological sciences    February 10, 2007   Volume 3, Issue 3 185-191 doi: 10.7150/ijbs.3.185
Green RD, Qureshi MA, Long JA, Burfening PJ, Hamernik DL.Agricultural animal research has been immensely successful over the past century in developing technology and methodologies that have dramatically enhanced production efficiency of the beef, dairy, swine, poultry, sheep, and aquaculture industries. In the past two decades, molecular biology has changed the face of agricultural animal research, primarily in the arena of genomics and the relatively new offshoot areas of functional genomics, proteomics, transcriptomics, metabolomics and metagenomics. Publication of genetic and physical genome maps in the past 15 years has given rise to the possib...
Genetic typing of equine arteritis virus isolates from Argentina.
Virus genes    February 9, 2007   Volume 35, Issue 2 313-320 doi: 10.1007/s11262-007-0081-4
Echeverría MG, Díaz S, Metz GE, Serena MS, Panei CJ, Nosetto E.We report the nucleotide sequence and genetic diversity of four Equine Arteritis Virus (EAV) ORF 5 and 6 from Argentina isolates, obtained from asymptomatic virus-shedding stallions. Nucleic acid recovered from the isolates were amplified by RT-PCR and sequenced. Nucleotide and deduced amino acid sequences from the Argentine isolates were compared with 17 sequences available from the GenBank. Phylogenetic analysis revealed that the Argentine isolates grouped together in a definite cluster near European strains. Despite the greater genetic variability among ORF 5 from different isolates and str...
Muc5b and Muc5ac are the major oligomeric mucins in equine airway mucus.
American journal of physiology. Lung cellular and molecular physiology    February 9, 2007   Volume 292, Issue 6 L1396-L1404 doi: 10.1152/ajplung.00444.2006
Rousseau K, Kirkham S, McKane S, Newton R, Clegg P, Thornton DJ.Horses frequently suffer from respiratory diseases, which, irrespective of etiology, are often associated with airway mucus accumulation. Studies on human airways have shown that the key structural components of the mucus layer are oligomeric mucins, which can undergo changes of expression and properties in disease. However, there is little information on these gel-forming glycoproteins in horse airways mucus. Therefore, the aims of this study were to isolate equine airways oligomeric mucins, characterize their macromolecular properties, and identify their gene products. To this end, pooled tr...
Induction of pulsatile secretion of leptin in horses following thyroidectomy.
The Journal of endocrinology    February 7, 2007   Volume 192, Issue 2 353-359 doi: 10.1677/joe.1.06989
Buff PR, Messer NT, Cogswell AM, Wilson DA, Johnson PJ, Keisler DH, Ganjam VK.Endocrine characteristics of Quarter Horse-type mares were determined during a 68 h feed deprivation and again in the same mares following surgical thyroidectomy (THX). A crossover experimental design was implemented, in which mares received brome hay available ad libitum (FED) or were food deprived (RES) for 68 h. Blood samples were collected every 20 min for 48 h, beginning 20 h after the onset of food deprivation. Concentrations of triiodothyronine and thyroxine were undetectable post-THX. Plasma concentrations of thyrotropin were greater post-THX versus pre-THX (P<0 x 001). Plasma conce...
Helicobacter equorum sp. nov., a urease-negative Helicobacter species isolated from horse faeces.
International journal of systematic and evolutionary microbiology    February 3, 2007   Volume 57, Issue Pt 2 213-218 doi: 10.1099/ijs.0.64279-0
Moyaert H, Decostere A, Vandamme P, Debruyne L, Mast J, Baele M, Ceelen L, Ducatelle R, Haesebrouck F.Gram-negative, curved, motile bacteria (strains EqF1T and EqF2) were isolated from faecal samples from two clinically healthy horses. Both strains possessed a single, monopolar, sheathed flagellum and were urease-negative. The novel strains grew at 37 degrees C under microaerobic conditions and were positive for oxidase, catalase and alkaline phosphatase activities. The isolates reduced nitrate to nitrite, but gamma-glutamyl transpeptidase activity was not detected. The novel isolates did not grow at 42 degrees C or on media containing 1 % glycine. They were resistant to cephalotin and nalidix...
A case of blind vagina in a crossbred Lusitano mare.
Animal reproduction science    February 1, 2007   Volume 101, Issue 3-4 338-343 doi: 10.1016/j.anireprosci.2007.01.016
Payan-Carreira R, Quaresma M, Oliveira-Martins T, Silva JR.This report describes a case of blind vagina diagnosed during a pre-breeding evaluation of a 5-year-old crossbred Lusitano mare. This mare was mated twice during the previous breeding season but remained open. Clinical evaluation revealed the existence of follicles in the ovaries and an enlarged uterus. An ultrasound examination showed that a granular free-floating fluid distended the uterus. No connection was detected between the uterus and the vagina and a presumptive diagnosis of congenital vaginal obstruction was raised. On vaginal examination it was noticed that the vagina was short in de...
Molecular analysis using mitochondrial DNA and microsatellites to infer the formation process of Japanese native horse populations.
Biochemical genetics    February 1, 2007   Volume 45, Issue 3-4 375-395 doi: 10.1007/s10528-007-9083-0
Kakoi H, Tozaki T, Gawahara H.To assess the genetic diversity of Japanese native horse populations, we examined seven such populations using mitochondrial DNA (mtDNA) and microsatellite analyses. Four reference populations of Mongolian horses and European breeds were employed as other equids. In the mtDNA analysis, the control region (D-loop) of 411 bp was sequenced, and 12 haplotypes with 33 variable sites were identified in the Japanese native horses. The phylogenetic tree constructed by haplogrouping and using worldwide geographic references indicated that the haplotypes of the Japanese native horses were derived from s...
SNP detection and radiation hybrid mapping in horses of nine candidate genes for temperament.
Animal genetics    January 30, 2007   Volume 38, Issue 1 81-83 doi: 10.1111/j.1365-2052.2006.01541.x
Momozawa Y, Takeuchi Y, Tozaki T, Kikusui T, Hasegawa T, Raudsepp T, Chowdhary BP, Kusunose R, Mori Y.No abstract available
Chromosomal assignment of five equine HTR genes by FISH and RH mapping.
Animal genetics    January 30, 2007   Volume 38, Issue 1 83-84 doi: 10.1111/j.1365-2052.2006.01546.x
Prause A, Guionaud CT, Klukowska-Rötzler J, Giulotto E, Magnani E, Chowdhary BP, Philipp U, Leeb T, Mevissen M.No abstract available
Chromosomal assignments and sequences for the equine core circadian clock genes.
Animal genetics    January 30, 2007   Volume 38, Issue 1 84-85 doi: 10.1111/j.1365-2052.2006.01549.x
Murphy BA, Lear TL, Adelson DL, Fitzgerald BP.No abstract available
Two SNPs in the SILV gene are associated with silver coat colour in ponies.
Animal genetics    January 30, 2007   Volume 38, Issue 1 1-6 doi: 10.1111/j.1365-2052.2006.01553.x
Reissmann M, Bierwolf J, Brockmann GA.In horses, a pigment dilution acting only on black eumelanin is the so-called silver coat colour, which is characterized by a chocolate-to-reddish body with a white mane and tail. Using information from other species, we focused our study on SILV as a possible candidate gene for the equine silver phenotype. A 1559-bp genomic fragment was sequenced in 24 horses, and five SNPs were detected. Two of the five SNPs (DQ665301:g.697A>T and DQ665301:g.1457C>T) were genotyped in 112 horses representing eight colour phenotypes. Both mutations were completely associated with the silver phenotype: all eum...
Genetic diversity and relationships of Portuguese and other horse breeds based on protein and microsatellite loci variation.
Animal genetics    January 30, 2007   Volume 38, Issue 1 20-27 doi: 10.1111/j.1365-2052.2006.01545.x
Luís C, Juras R, Oom MM, Cothran EG.There are three native Portuguese horse breeds: Lusitano, Sorraia and Garrano. This study compares diversity patterns of 17 protein and 12 microsatellite markers in these three as well as 30 other breeds to infer relationships among the breeds and to compare levels of polymorphism of these breeds for use in conservation efforts. The Garrano and the Lusitano showed a high level of genetic diversity, similar to that observed for most of the other analysed breeds, while the Sorraia and Friesian breeds showed low levels of variation for both genetic marker types. The combined protein and microsate...
Relationships among inflammatory cytokines, obesity, and insulin sensitivity in the horse.
Journal of animal science    January 30, 2007   Volume 85, Issue 5 1144-1155 doi: 10.2527/jas.2006-673
Vick MM, Adams AA, Murphy BA, Sessions DR, Horohov DW, Cook RF, Shelton BJ, Fitzgerald BP.Recent studies associate obesity and insulin resistance in horses with development of abnormal reproductive function and debilitating laminitis. The factors contributing to insulin resistance in obese horses are unknown. However, human studies provide evidence that elevated inflammatory cytokines such as tumor necrosis factor alpha (TNFalpha), IL1, and IL6 play direct roles in development of obesity-associated insulin resistance. Thus, inflammation may be a key link between obesity and insulin resistance in horses. The aim of the current investigation was to examine possible relationships betw...
Equine zona protein synthesis and ZP structure during folliculogenesis, oocyte maturation, and embryogenesis.
Molecular reproduction and development    January 26, 2007   Volume 74, Issue 7 851-859 doi: 10.1002/mrd.20501
Kölle S, Dubois CS, Caillaud M, Lahuec C, Sinowatz F, Goudet G.In the equine, the zona pellucida (ZP) is the major barrier to successful in vitro fertilization. Therefore the aim of our studies was to analyze species-specific features of the equine ZP in regard to structure and glycoprotein ZPB and ZPC expression sites during oocyte development and embryogenesis. The equine ZP revealed high immunological cross-reactivity to porcine ZPB and ZPC. In the ovary, the distribution of ZPB and ZPC was co-localized and correlated with the developmental stage of the follicle. ZPB and ZPC expression started in the oocyte of the late primordial and primary follicle. ...
Interactions responsible for secondary structure formation during folding of equine beta-lactoglobulin.
Journal of molecular biology    January 25, 2007   Volume 367, Issue 4 1205-1214 doi: 10.1016/j.jmb.2007.01.053
Nakagawa K, Yamada Y, Fujiwara K, Ikeguchi M.Equine beta-lactoglobulin forms a compact intermediate at an acidic pH (A state). It also forms an expanded and helical conformation at low temperatures (C state). The structure of a single disulfide mutant C66A/C160A is similar to the A state in the presence of salts, while it is similar to the C state at low anion concentrations. We have investigated the temperature-dependent change in the secondary structure using circular dichroism and proline scanning mutagenesis. At low anion concentrations, the helical content increased linearly as temperature decreased. In the presence of salts, the A ...
Plasma concentrations of a type II collagen-derived peptide and its nitrated form in growing Ardenner sound horses and in horses suffering from juvenile digital degenerative osteoarthropathy.
Veterinary research communications    January 24, 2007   Volume 31, Issue 5 591-601 doi: 10.1007/s11259-007-3518-2
Lejeune JP, Serteyn D, Gangl M, Schneider N, Deby-Dupont G, Deberg M, Henrotin Y.Several breeds of draft horses suffer from degenerative digital osteoarthropathy, resulting in a reduced active lifespan. A group of 30 Ardenner horses was followed, in standardized conditions, from 15 to 28 months of age to detect the early manifestations of the disease. The severity of the disease was assessed according to a personal grading system including clinical and radiographic items. Coll 2-1, a peptide of the helical region of type II collagen, and its nitrated form (Coll 2-1 NO(2)) were assayed in blood plasma collected at 452 +/- 18 days, 504 +/- 20 days, 558 +/- 18 days, 613 +/- 1...
Molecular cloning of equine 17beta-hydroxysteroid dehydrogenase type 1 and its downregulation during follicular luteinization in vivo.
Journal of molecular endocrinology    January 24, 2007   Volume 38, Issue 1-2 67-78 doi: 10.1677/jme.1.02097
Brown KA, Sayasith K, Bouchard N, Lussier JG, Sirois J.The type 1 form of 17beta-hydroxysteroid dehydrogenase (17betaHSD1) was the first isoform to be identified and is capable of converting estrone to 17beta-estradiol. This study was aimed at characterizing the molecular structure of the equine 17betaHSD1 gene and cDNA, as well as its molecular regulation during human chorionic gonadotropin (hCG)-induced follicular luteinization/ovulation in vivo. The equine 17betaHSD1 gene was cloned from an equine genomic library and shown to have a conserved genomic structure composed of six exons. Its cDNA sequence was also identified and coded for a 308 amin...
Neonatal growth cartilage: equine tissue specific gene expression.
Biochemical and biophysical research communications    January 23, 2007   Volume 354, Issue 4 975-980 doi: 10.1016/j.bbrc.2007.01.074
Johannessen MK, Skretting G, Ytrehus B, Røed KH.Endochondral bone formation is an important process in development and growth of the skeleton; still many of the mechanisms of growth cartilage remain unknown. The aim of this study was to identify genes specifically expressed in growth cartilage by constructing a subtraction cDNA library of the articular-epiphyseal cartilage complex from neonatal foal. Two hundred and eighty-four differently expressed clones, representing five novel and 37 known genes, were detected by subtraction hybridization. The tissue specificity of these genes was verified by reverse Northern analysis, and tissue distri...
Identification of environmental factors affecting the prevalence of insect bite hypersensitivity in Shetland ponies and Friesian horses in The Netherlands.
Equine veterinary journal    January 19, 2007   Volume 39, Issue 1 69-73 doi: 10.2746/042516407x153020
van Grevenhof EM, Ducro B, Heuven HC, Bijma P.It is expected that climate and habitat factors influence the prevalence of culicoides and, therefore, the prevalence of insect bite hypersensitivity (IBH), but very little is described in the literature to prove the association of these factors. Prevalence varies widely from 3% in certain areas of Great Britain to 60% in certain parts of Australia. Objective: To describe the influence of environmental factors on the prevalence of IBH in Shetland ponies and Friesian horses in The Netherlands. Methods: Data on 3284 Shetland and 2824 Friesian mares (n = 6108) were collected in The Netherlands, b...
Prevalence, heritability and significance of musculoskeletal conformational traits in Thoroughbred yearlings.
Equine veterinary journal    January 19, 2007   Volume 38, Issue 7 597-603 doi: 10.2746/042516406x159016
Love S, Wyse CA, Stirk AJ, Stear MJ, Calver P, Voute LC, Mellor DJ.The assessment of belief that equine conformation is associated with performance and durability is a fundamental concept of horsemanship. Surprisingly, there is almost no quantitative evidence to support these beliefs. Objective: To assess the prevalence and heritability of conformational traits in Thoroughbred yearlings, and investigate their significance for subsequent turf flat-racing performance and durability. Methods: Nine selected conformational traits were assessed in a consistent, qualitative manner by a single veterinary observer and entered into a database together with details of p...