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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Characterization of a novel gram-positive, catalase-negative coccus from horses: description of Eremococcus coleocola gen. nov., sp. nov.
International journal of systematic bacteriology    November 11, 1999   Volume 49 Pt 4 1381-1385 doi: 10.1099/00207713-49-4-1381
Collins MD, Rodriguez Jovita M, Lawson PA, Falsen E, Foster G.Two strains of an unknown Gram-positive, catalase-negative, facultatively anaerobic coccus originating from the reproductive tract of horses were characterized by phenotypic and molecular taxonomic methods. Comparative 16S rRNA gene sequencing studies demonstrated that the two strains constitute a new subline within the lactic-acid group of bacteria, close to, but distinct from, Abiotrophia defectiva, Globicatella sanguinis and close relatives. The unknown bacterium was readily distinguished from other described Gram-positive, catalase-negative cocci by biochemical tests and electrophoretic an...
Equine synteny mapping of comparative anchor tagged sequences (CATS) from human Chromosome 5.
Mammalian genome : official journal of the International Mammalian Genome Society    November 11, 1999   Volume 10, Issue 11 1082-1084 doi: 10.1007/s003359901165
Caetano AR, Lyons LA, Laughlin TF, O'Brien SJ, Murray JD, Bowling AT.Comparative anchor tagged sequences (CATS) from human Chromosome 5 (HSA5) were used as PCR primers to produce molecular markers for synteny mapping in the horse. Primer sets for 21 genes yielded eight horse-specific markers, which were mapped with the UC Davis horse-mouse somatic cell hybrid panel into two synteny groups: UCD14 and UCD21. These data, in conjunction with earlier human chromosome painting studies of the horse karyotype and synteny mapping of horse microsatellite markers physically mapped by FISH, confirm the assignment of UCD21 to ECA21 and suggest that UCD14 is located on ECA14...
Genetic and antigenic diversity among eastern equine encephalitis viruses from North, Central, and South America.
The American journal of tropical medicine and hygiene    November 5, 1999   Volume 61, Issue 4 579-586 doi: 10.4269/ajtmh.1999.61.579
Brault AC, Powers AM, Chavez CL, Lopez RN, Cachón MF, Gutierrez LF, Kang W, Tesh RB, Shope RE, Weaver SC.Eastern equine encephalitis virus (EEEV), the sole species in the EEE antigenic complex, is divided into North and South American antigenic varieties based on hemagglutination inhibition tests. Here we describe serologic and phylogenetic analyses of representatives of these varieties, spanning the entire temporal and geographic range available. Nucleotide sequencing and phylogenetic analyses revealed additional genetic diversity within the South American variety; 3 major South/Central American lineages were identified including one represented by a single isolate from eastern Brazil, and 2 lin...
Effects of long terminal repeat sequence variation on equine infectious anemia virus replication in vitro and in vivo.
Virology    November 2, 1999   Volume 263, Issue 2 408-417 doi: 10.1006/viro.1999.9921
Lichtenstein DL, Craigo JK, Leroux C, Rushlow KE, Cook RF, Cook SJ, Issel CJ, Montelaro RC.The long terminal repeat (LTR) is reported to be one of the most variable portions of the equine infectious anemia virus (EIAV) genome. To date, however, no information is available on the effects of observed sequence variations on viral replication properties, despite a widespread assumption of the biological importance of EIAV LTR variation. EIAV LTR sequence variability is confined mostly to a small portion of the enhancer within the U3 segment of the LTR. Analysis of published EIAV LTR sequences revealed six different types of LTR based on the pattern of putative transcription factor motif...
Cloning and sequencing of horse interleukin-12 and interleukin-18 cDNAs.
Immunogenetics    October 29, 1999   Volume 50, Issue 1-2 94-97 doi: 10.1007/s002510050693
Nicolson L, Penha-Goncalves MN, Keanie JL, Logan NA, Argyle DJ, Onions DE.No abstract available
Agonist-induced adherence of equine neutrophils to fibronectin- and serum-coated plastic is CD18 dependent.
Veterinary immunology and immunopathology    October 26, 1999   Volume 71, Issue 2 77-88 doi: 10.1016/s0165-2427(99)00093-8
Marr KA, Lees P, Cunningham FM.Adherence to vascular endothelium and extracellular matrix proteins is a pre-requisite for neutrophil accumulation at sites of inflammation. In this study, equine neutrophil adherence to fibronectin and autologous serum-coated plastic in response to PAF, hrIL-8, hrC5a and PMA has been measured. In addition, the mechanisms involved have been investigated using monoclonal antibodies (MoAbs) against the beta2 integrin CD18. PAF and hrC5a caused similar, concentration dependent, increases in adherence to fibronectin- and serum-coated plastic (maximum responses 19 +/- 4% and 19 +/- 3% for PAF and 1...
MR 20492 and MR 20494: two indolizinone derivatives that strongly inhibit human aromatase.
The Journal of steroid biochemistry and molecular biology    October 21, 1999   Volume 70, Issue 1-3 59-71 doi: 10.1016/s0960-0760(99)00093-x
Auvray P, Sourdaine P, Moslemi S, Séralini GE, Sonnet P, Enguehard C, Guillon J, Dallemagne P, Bureau R, Rault S.In this study, we describe the synthesis of a new family of indolizinone derivatives designed to fit an extrahydrophobic pocket within the active site of aromatase and to strongly inhibit human aromatase. This could help improve the specificity of the inhibitors. Equine aromatase, very well characterized biochemically, is used as a comparative model. Indeed, in a previous comparison between both human and equine aromatases, we described the importance of the interaction between the inhibitor and this pocket for the indane derivative MR 20814. MR 20492 and MR 20494 are more potent inhibitors of...
Cloning and expression of a 48-kilodalton Babesia caballi merozoite rhoptry protein and potential use of the recombinant antigen in an enzyme-linked immunosorbent assay.
Journal of clinical microbiology    October 19, 1999   Volume 37, Issue 11 3475-3480 doi: 10.1128/JCM.37.11.3475-3480.1999
Ikadai H, Xuan X, Igarashi I, Tanaka S, Kanemaru T, Nagasawa H, Fujisaki K, Suzuki N, Mikami T.A cDNA expression library prepared from Babesia caballi merozoite mRNA was screened with a monoclonal antibody BC11D against the rhoptry protein of B. caballi merozoite. A cDNA encoding a 48-kDa protein of B. caballi was cloned and designated BC48. The complete nucleotide sequence of the BC48 gene had 1,828 bp and was shown to contain no intron. Southern blotting analysis indicated that the BC48 gene contained more than two copies in the B. caballi genome. Computer analysis suggested that this sequence contained an open reading frame of 1,374 bp with a coding capacity of approximately 52 kDa. ...
Characterization of a Sarcocystis neurona isolate (SN6) from a naturally infected horse from Oregon.
The Journal of eukaryotic microbiology    October 16, 1999   Volume 46, Issue 5 500-506 doi: 10.1111/j.1550-7408.1999.tb06067.x
Dubey JP, Mattson DE, Speer CA, Baker RJ, Mulrooney DM, Tornquist SJ, Hamir AN, Gerros TC.An isolate of Sarcocystis neurona (SN6) was obtained from the spinal cord of a horse from Oregon with neurologic signs. The parasite was isolated in cultures of bovine monocytes and equine spleen cells. The parasite divided by endopolygeny and completed at least one asexual cycle in cell cultures in three days. Two gamma interferon knockout mice inoculated with cell culture-derived merozoites became ill 35 d later and S. neurona schizonts and merozoites were found in encephalitic lesions. The parasite in tissue sections of mice reacted with S. neurona-specific antibodies and S. neurona was rei...
The molecular genetics of red and green color vision in mammals.
Genetics    October 8, 1999   Volume 153, Issue 2 919-932 doi: 10.1093/genetics/153.2.919
Yokoyama S, Radlwimmer FB.To elucidate the molecular mechanisms of red-green color vision in mammals, we have cloned and sequenced the red and green opsin cDNAs of cat (Felis catus), horse (Equus caballus), gray squirrel (Sciurus carolinensis), white-tailed deer (Odocoileus virginianus), and guinea pig (Cavia porcellus). These opsins were expressed in COS1 cells and reconstituted with 11-cis-retinal. The purified visual pigments of the cat, horse, squirrel, deer, and guinea pig have lambdamax values at 553, 545, 532, 531, and 516 nm, respectively, which are precise to within +/-1 nm. We also regenerated the "true" red ...
Salmonella Abortusequi strains of equine origin harbor a 95kb plasmid responsible for virulence in mice.
Veterinary microbiology    October 6, 1999   Volume 68, Issue 3-4 265-272 doi: 10.1016/s0378-1135(99)00078-4
Akiba M, Sameshima T, Anzai T, Wada R, Nakazawa M.Most Salmonella choleraesuis subsp. choleraesuis serovar Abortusequi strains of equine origin harbor a 95kb plasmid, pSA95. Results of PCR and Southern blot analysis suggest that pSA95 contains spv genes. A pSA95-cured strain of S. Abortusequi was 48 times less virulent to mice than its parental strain. Virulence was restored by reintroduction of pSA95. These results provide clear evidence that pSA95 confers virulence on S. Abortusequi in mice. This is the first report describing a virulence plasmid of S. Abortusequi.
Hyperkalaemic periodic paralysis in horses: a review.
Equine veterinary journal    October 3, 1999   Volume 31, Issue 5 362-367 doi: 10.1111/j.2042-3306.1999.tb03834.x
Meyer TS, Fedde MR, Cox JH, Erickson HH.No abstract available
Myeloblastic leukaemia in a Morgan horse mare.
Equine veterinary journal    October 3, 1999   Volume 31, Issue 5 446-448 doi: 10.1111/j.2042-3306.1999.tb03847.x
Clark P, Cornelisse CJ, Schott HC, Swenson CL, Bell TG.No abstract available
Age-related changes to the molecular and cellular components of equine flexor tendons.
Equine veterinary journal    October 3, 1999   Volume 31, Issue 5 391-396 doi: 10.1111/j.2042-3306.1999.tb03838.x
Birch HL, Bailey JV, Bailey AJ, Goodship AE.Specific tendons show a high incidence of partial central core rupture which is preceded by degeneration. In the performance horse, the superficial digital flexor tendon (SDFT) is most often affected. We have described previously the molecular changes that are associated with degeneration in the central core region of the equine SDFT. The pathophysiological mechanism leading to change in synthetic activity of central zone cells in degenerated tendons is not known. In this study, we test the hypothesis that ageing results in matrix composition changes within the central zone of the SDFT. Extrac...
Natural variation of equine infectious anemia virus Gag protein cytotoxic T lymphocyte epitopes.
Virology    September 25, 1999   Volume 261, Issue 2 242-252 doi: 10.1006/viro.1999.9862
Zhang W, Auyong DB, Oaks JL, McGuire TC.Two defined cytotoxic T lymphocyte (CTL) epitopes from equine infectious anemia virus (EIAV)-infected horses, equine leukocyte alloantigen (ELA)-A5.1-restricted epitope 18a, and ELA-A9-restricted epitope 28b-1 were evaluated for conservation among three wild-type EIAV strains. Epitope 18a variation occurred in all three wild-type EIAV strains, while epitope 28b-1 varied in one strain. Further, 12% amino acid changes occurred in the Gag proteins of a recently isolated wild-type strain, documenting a much greater Gag protein variation than previously reported. Evaluation of epitope 18a among two...
The equine herpes virus 4 thymidine kinase is a better suicide gene than the human herpes virus 1 thymidine kinase.
Gene therapy    September 22, 1999   Volume 6, Issue 9 1638-1642 doi: 10.1038/sj.gt.3300993
Loubière L, Tiraby M, Cazaux C, Brisson E, Grisoni M, Zhao-Emonet J, Tiraby G, Klatzmann D.The herpes simplex virus type 1 thymidine kinase suicide gene (HSV1tk) together with ganciclovir (GCV) have been successfully used for in vivo treatment of various experimental tumors, and many clinical trials using this system have been launched. With the aim to improve this therapeutic system, we compared the potential efficacy of different herpes virus derived thymidine kinases (HSV1, varicella-zoster virus, equine herpes virus type-4 and Epstein-Barr virus) as suicide genes in association with the nucleoside analogs acyclovir, ganciclovir and bromovinyldeoxyur- idine. Using various murine ...
Immunity in equine cyathostome infections.
Veterinary parasitology    September 15, 1999   Volume 85, Issue 2-3 123-225 doi: 10.1016/s0304-4017(99)00093-x
Klei TR, Chapman MR.Defining the characteristics of immunity and immune responses to equine cyathostome infections is clearly important to advancing our understanding of the development of these nematodes within the host, the clinical conditions attributed to them, and in developing more rational and novel strategies for their control. Nonetheless, little is currently known on this topic. Current data based on field observations, worm burdens and fecal egg counts suggest that horses acquire a resistance to cyathostome infection with age. This response is slow to develop and incomplete in that most horses regardle...
Evolutionary history of MHC class I genes in the mammalian order Perissodactyla.
Journal of molecular evolution    September 4, 1999   Volume 49, Issue 3 316-324 doi: 10.1007/pl00006554
Holmes EC, Ellis SA.We carried out an analysis of partial sequences from expressed major histocompatibility complex (MHC) class I genes isolated from a range of equid species and more distantly related members of the mammalian order Perissodactyla. Phylogenetic analysis revealed a minimum of six groups, five of which contained genes and alleles that are found in equid species and one group specific to the rhinoceros. Four of the groups contained only one, or very few sequences, indicating the presence of relatively nonpolymorphic loci, while another group contained the majority of the equid sequences identified. ...
Novel cathelicidins in horse leukocytes(1).
FEBS letters    September 3, 1999   Volume 457, Issue 3 459-464 doi: 10.1016/s0014-5793(99)01097-2
Scocchi M, Bontempo D, Boscolo S, Tomasinsig L, Giulotto E, Zanetti M.Cathelicidins are precursors of defense peptides of the innate immunity and are widespread in mammals. Their structure comprises a conserved prepropiece and an antimicrobial domain that is structurally varied both intra- and inter-species. We investigated the complexity of the cathelicidin family in horse by a reverse transcription-PCR-based cloning strategy of myeloid mRNA and by Southern and Western analyses. Three novel cathelicidin sequences were deduced from bone marrow mRNA and designated equine cathelicidins eCATH-1, eCATH-2 and eCATH-3. Putative antimicrobial domains of 26, 27 and 40 r...
Equine dinucleotide repeat loci COR041-COR060.
Animal genetics    September 1, 1999   Volume 30, Issue 4 320-321 doi: 10.1046/j.1365-2052.1999.00445-4.x
Ruth LS, Hopman TJ, Schug MD, Aquadro CF, Bowling AT, Murray JD, Caetano AR, Antczak DF.No abstract available
Genetic stability of equine arteritis virus during horizontal and vertical transmission in an outbreak of equine viral arteritis.
The Journal of general virology    August 31, 1999   Volume 80 ( Pt 8) 1949-1958 doi: 10.1099/0022-1317-80-8-1949
Balasuriya UBR, Hedges JF, Nadler SA, McCollum WH, Timoney PJ, MacLachlan NJ.An imported carrier stallion (A) from Europe was implicated in causing an extensive outbreak of equine viral arteritis (EVA) on a Warmblood breeding farm in Pennsylvania, USA. Strains of equine arteritis virus (EAV) present in the semen of two carrier stallions (A and G) on the farm were compared to those in tissues of foals born during the outbreak, as well as viruses present in the semen of two other stallions that became persistently infected carriers of EAV following infection during the outbreak. The 2822 bp segment encompassing ORFs 2-7 (nt 9807-12628; which encode the G(S), GP3, GP4, G(...
Genetic evidence for the origins of Venezuelan equine encephalitis virus subtype IAB outbreaks.
The American journal of tropical medicine and hygiene    August 31, 1999   Volume 60, Issue 3 441-448 doi: 10.4269/ajtmh.1999.60.441
Weaver SC, Pfeffer M, Marriott K, Kang W, Kinney RM.Epizootics of Venezuelan equine encephalitis (VEE) involving subtype IAB viruses occurred sporadically in South, Central and North America from 1938 to 1973. Incompletely inactivated vaccines have long been suspected as a source of the later epizootics. We tested this hypothesis by sequencing the PE2 glycoprotein precursor (1,677 nucleotides) or 26S/nonstructural protein 4 (nsP4) genome regions (4,490 nucleotides) for isolates representing most major outbreaks. Two distinct IAB genotypes were identified: 1) 1940s Peruvian strains and 2) 1938-1973 isolates from South, Central, and North America...
Latency-associated transcripts of equine herpesvirus type 4 in trigeminal ganglia of naturally infected horses.
The Journal of general virology    August 31, 1999   Volume 80 ( Pt 8) 2165-2171 doi: 10.1099/0022-1317-80-8-2165
Borchers K, Wolfinger U, Ludwig H.Equine herpesvirus type 4 (EHV-4) is a major respiratory pathogen of horses. Unlike most other members of the Alphaherpesvirinae, EHV-4 was regarded as non-neurotropic. Here, neural and lymphoid tissues of 17 horses have been analysed post-mortem. EHV-4 DNA was detected in 11 cases (65%) by PCR, exclusively in the trigeminal ganglia. In order to define the transcriptional activity, RNA preparations of 10 EHV-4 DNA-positive ganglia were investigated by nested RT-PCR. EHV-4-specific transcripts derived from genes 63 [herpes simplex virus type 1 (HSV-1) ICPO gene homologue] and 64 (HSV-1 ICP4 gen...
Dual regulation of promoter II- and promoter 1f-derived cytochrome P450 aromatase transcripts in equine granulosa cells during human chorionic gonadotropin-induced ovulation: a novel model for the study of aromatase promoter switching.
Endocrinology    August 28, 1999   Volume 140, Issue 9 4133-4141 doi: 10.1210/endo.140.9.6951
Boerboom D, Kerban A, Sirois J.Estradiol biosynthesis is a key biochemical trait of developing follicles. To study its regulation in equine follicles, the objectives of this study were to clone and determine the structure of equine cytochrome P450 aromatase (P450AROM), and characterize the regulation of P450AROM and P450 17alpha-hydroxylase/C17-20 lyase (P45017alpha) messenger RNAs (mRNAs) in vivo in equine preovulatory follicles isolated during hCG-induced ovulation. Two distinct P450AROM complementary DNAs (cDNAs) were isolated from an equine preovulatory follicle cDNA library. One clone was 2682 bp in length and included...
Deletion of the Sry region on the Y chromosome detected in a case of equine gonadal hypoplasia (XY female) with abnormal hormonal profiles.
Equine veterinary journal    August 24, 1999   Volume 31, Issue 4 336-338 
Abe S, Miyake YI, Kageyama SI, Watanabe G, Taya K, Kawakura K.No abstract available
Unilateral Leydig cell tumour resulting in acute colic and scrotal swelling in a stallion with descended testes.
Equine veterinary journal    August 24, 1999   Volume 31, Issue 4 343-345 doi: 10.1111/j.2042-3306.1999.tb03828.x
May KA, Moll HD, Duncan RB, Pleasant RS, Purswell BJ.No abstract available
Testicular neoplasia of horses: an underreported condition.
Equine veterinary journal    August 24, 1999   Volume 31, Issue 4 270-272 doi: 10.1111/j.2042-3306.1999.tb03815.x
Schumacher J.No abstract available
Infertility in two mares with XY and XXX sex chromosomes.
Equine veterinary journal    August 24, 1999   Volume 31, Issue 4 346-349 doi: 10.1111/j.2042-3306.1999.tb03829.x
Mäkinen A, Hasegawa T, Mäkilä M, Katila T.No abstract available
Estimation of the prevalence of severe combined immunodeficiency disease in UK Arab horses as determined by a DNA-based test.
The Veterinary record    August 19, 1999   Volume 145, Issue 1 22-23 doi: 10.1136/vr.145.1.22
Swinburne J, Lockhart L, Scott M, Binns MM.No abstract available
Abnormal regulation of muscle contraction in horses with recurrent exertional rhabdomyolysis.
American journal of veterinary research    August 18, 1999   Volume 60, Issue 8 992-999 
Lentz LR, Valberg SJ, Balog EM, Mickelson JR, Gallant EM.To determine whether abnormal regulation of muscle contraction similar to that associated with malignant hyperthermia (MH) was evident in intact external intercostal muscle cells from Thoroughbreds with recurrent exertional rhabdomyolysis (RER). Methods: 5 adult Thoroughbred horses with RER and 7 clinically normal adult Thoroughbred or mixed-breed horses. Methods: Twitch time course variables and contracture responses to various concentrations of potassium, caffeine, and halothane were measured in small bundles of intact external intercostal muscle cells from clinically normal horses and horse...