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Topic:In Situ Hybridization

In situ hybridization (ISH) is a molecular technique used to detect specific nucleic acid sequences within fixed tissues and cells. In equine research, ISH is utilized to study gene expression patterns and the localization of specific RNA or DNA sequences in horse tissues. This technique provides insights into the spatial and temporal aspects of gene activity, helping to elucidate the molecular mechanisms underlying various physiological and pathological processes in horses. ISH can be applied to a range of tissues, including those affected by diseases, to better understand the genetic contributions to equine health and disease. This page compiles peer-reviewed research studies and scholarly articles that explore the applications, methodologies, and findings of in situ hybridization in equine studies.
Presence of African horse sickness virus in equine tissues, as determined by in situ hybridization.
Veterinary pathology    November 1, 1994   Volume 31, Issue 6 689-694 doi: 10.1177/030098589403100609
Brown CC, Meyer RF, Grubman MJ.In a retrospective study, a negative-sense digoxigenin-labeled RNA probe, corresponding to the gene encoding nonstructural protein-1 of African horse sickness virus (AHSV) serotype 4, was applied to formalin-fixed, paraffin-embedded tissue taken from horses in the terminal stages of infection with AHSV. Fifteen infected ponies and one noninfected control were studied. Ponies exhibited a range of clinical signs and lesions. Thirteen ponies were infected with serotype 4, one with serotype 1, and one with serotype 2. Ponies were monitored clinically and euthanatized when severely clinically ill. ...
[Morphologic and molecular biologic studies of the etiology of equine sarcoid].
Tierarztliche Praxis    August 1, 1994   Volume 22, Issue 4 368-376 
Teifke JP.From 932 equine skin lesions 421 were diagnosed as sarcoids (about 45%). The most common locations were the ventral body regions, head, neck and sites of thin skin. Most often the fibroblastic type, less frequently the mixed type and most infrequent the verrucous type of sarcoid were diagnosed. Detection of BPV-DNA was performed by polymerase chain reaction (PCR) using an oligonucleotide primer pair located in the E5-open reading frame. DNA of BPV 1 and BPV 2 could be differentiated by digestion with restriction endonucleases. In 97 out of 108 sarcoids BPV-DNA was detected by PCR. Most samples...
Correlation between monoclonal antibody reactivity and expression of CD4 and CD8 alpha genes in the horse.
Veterinary immunology and immunopathology    July 1, 1994   Volume 42, Issue 1 61-69 doi: 10.1016/0165-2427(94)90089-2
Grünig G, Barbis DP, Zhang CH, Davis WC, Lunn DP, Antczak DF.Equine peripheral blood lymphocytes (PBL) were enriched by positive selection using panning with a mixture of monoclonal antibodies against putative equine CD4 (Equine Leucocyte Antigen Workshop antibodies WS 1 and WS 72), or CD8 molecules (Workshop antibodies WS 12, WS 49, and WS 74). RNA was extracted from CD4 enriched cells (99% purity), from CD8 enriched cells (69% purity), from peripheral blood lymphocytes, and from neonatal equine thymus. RNA extracted from equine granulocytes and from equine kidney served as negative control. The RNA was electrophoresed in agarose and transferred to nyl...
Identification of the horse epidermal growth factor (EGF) coding sequence and its use in monitoring EGF gene expression in the endometrium of the pregnant mare.
Journal of molecular endocrinology    June 1, 1994   Volume 12, Issue 3 341-350 doi: 10.1677/jme.0.0120341
Stewart F, Power CA, Lennard SN, Allen WR, Amet L, Edwards RM.The PCR technique and highly degenerate oligonucleotide primers were used to amplify a 282 bp fragment of the horse (Equus caballus) epidermal growth factor (EGF) cDNA. The clone corresponded to 94 amino acids of the EGF precursor molecule. The deduced amino acid sequence of the 53 residue EGF mitogenic peptide within the precursor sequence showed 60-70% identity with five other published EGF sequences. The PCR cDNA fragment hybridized to a 4.9 kb transcript in horse kidney and endometrial RNA which was of a similar size to the mature EGF transcript found in other mammalian species. The horse ...
In-situ hybridization for demonstration of equine herpesvirus type 1 DNA in paraffin wax-embedded tissues and its use in horses with disseminated necrotizing myeloencephalitis.
Journal of comparative pathology    April 1, 1994   Volume 110, Issue 3 215-225 doi: 10.1016/s0021-9975(08)80275-7
Schmidt P, Meyer H, Hübert P, Hafner A, Andiel E, Grabner A, Dahme E.The detection of equine herpesvirus type 1 (EHV-1) in infected cell cultures, and in tissues taken at necropsy, by the in-situ hybridization technique is described. A 4.9 kb Bam HI fragment of EHV-1 vaccine strain RacH was used as a probe after labelling with [alpha-32P] thymidine 5'-triphosphate ([32P]TTP) or digoxigenin-deoxyuridine 5'-triphosphate (dUTP). Both probes specifically detected EHV-1 DNA in either cytospin or paraffin wax-embedded preparations of infected cells. The digoxigenin-labelled probe was further used to examine tissue sections of equine fetuses which had been aborted due...
Molecular cloning of an equine satellite-type DNA sequence and its chromosomal localization.
Cytogenetics and cell genetics    January 1, 1994   Volume 66, Issue 1 27-30 doi: 10.1159/000133657
Sakagami M, Hirota K, Awata T, Yasue H.We have molecularly cloned portions of equine satellite-type DNA and investigated the organization of the DNA sequence of the cloned segments. Sequence analysis and dot-blot analysis, using the cloned sequence (ES200) as a probe, indicate that the satellite-type DNA sequence consists mainly of 221-bp tandem repeats and represents 3.7-11% of the equine genome. Southern blot analysis further shows that (1) no sequences homologous to ES200 exist in the human, swine, and bovine genomes and that (2) the fragment pattern of the satellite-type DNA produced by ApaI cleavage shows a slight difference a...
Rapid evolution of horse satellite DNA.
Genomics    October 1, 1993   Volume 18, Issue 1 113-117 doi: 10.1006/geno.1993.1433
Wijers ER, Zijlstra C, Lenstra JA.The major satellite of the horse genome consists of about 1 million copies of a 221-bp tandem repeat unit. By fluorescence in situ hybridization it has been localized in the centromeres of 58 of the 64 horse chromosomes. The donkey genome contains a similar but not identical satellite. Strikingly, the equine repeat did not hybridize to DNA of the Grevy zebra, despite the divergence of the horse and zebra only 3 to 5 million years ago and the ability of these species to crossbreed. The evolution of satellite DNA in the Equidae is more rapid than that in other mammalian families, which may be ex...
Synteny mapping in the horse using horse-mouse heterohybridomas.
Animal genetics    August 1, 1993   Volume 24, Issue 4 257-260 doi: 10.1111/j.1365-2052.1993.tb00308.x
Williams H, Richards CM, Konfortov BA, Miller JR, Tucker EM.In a study of 35 horse-mouse heterohybridoma cell lines, synteny in the horse was found between LDHB, PEPB and IGF1 and between NP, MPI and IDH2. A synteny between ADA and PEPC was also indicated. The loci for horse immunoglobulin light chain (IgL) genes and for LDHA were independent.
Localization of xanthine dehydrogenase mRNA in horse skeletal muscle by in situ hybridization with digoxigenin-labelled probe.
The Biochemical journal    June 15, 1993   Volume 292 ( Pt 3), Issue Pt 3 639-641 doi: 10.1042/bj2920639
Räsänen LA, Karvonen U, Pösö AR.In situ hybridization was used to localize xanthine dehydrogenase (XDH) mRNA in horse skeletal muscle. Capillary endothelial cells were found to express XDH, but muscle cells did not give any signal. The digoxigenin-labelled probe was produced by PCR with primers based on the cDNA sequence of mouse XDH and horse lung cDNAs. A 4.3 kb mRNA was detected in a Northern blot.
In situ hybridisation of equine sarcoids with bovine papilloma virus.
The Veterinary record    February 6, 1993   Volume 132, Issue 6 132-133 doi: 10.1136/vr.132.6.132
Lory S, von Tscharner C, Marti E, Bestetti G, Grimm S, Waldvogel A.No abstract available
Localization of the horse (Equus caballus) alpha-globin gene complex to chromosome 13 by fluorescence in situ hybridization.
Cytogenetics and cell genetics    January 1, 1993   Volume 62, Issue 2-3 136-138 doi: 10.1159/000133456
Oakenfull EA, Buckle VJ, Clegg JB.The alpha-globin gene complex in Equus caballus has been mapped by fluorescence in situ hybridization to the telomeric region of the long arm of chromosome 13. This is the first equine gene to be mapped to this chromosome.
Wild-type equine infectious anemia virus replicates in vivo predominantly in tissue macrophages, not in peripheral blood monocytes.
Journal of virology    October 1, 1992   Volume 66, Issue 10 5906-5913 doi: 10.1128/JVI.66.10.5906-5913.1992
Sellon DC, Perry ST, Coggins L, Fuller FJ.In situ hybridization of tissues from two horses infected with the wild-type Wyoming strain of equine infectious anemia virus (EIAV) identified the liver, spleen, lymph nodes, kidney, lung, and adrenal gland as the primary host tissue sites for viral transcription during acute infection. Combined immunohistochemistry, with a monoclonal antibody recognizing a cytoplasmic antigen of equine mononuclear phagocytes, and in situ hybridization for viral RNA identified most infected cells as mature tissue macrophages. In contrast, in situ hybridization of adherent peripheral blood mononuclear cells co...
Evidence for two serotype G3 subtypes among equine rotaviruses.
Journal of clinical microbiology    February 1, 1992   Volume 30, Issue 2 485-491 doi: 10.1128/jcm.30.2.485-491.1992
Browning GF, Chalmers RM, Fitzgerald TA, Snodgrass DR.Ten cultivable equine rotavirus isolates, two of North American, six of British, and two of Irish origin, were compared with standard rotavirus strains and with each other by cross neutralization, neutralization with a panel of monoclonal antibodies (MAbs), hybridization to a simian rotavirus (SA-11) VP7 gene probe, and reaction with rotavirus subgrouping and serotyping MAbs in enzyme-linked immunosorbent assays. Six isolates, two of which had previously been serotyped as G3 by other workers, were found to be serotype G3; one was confirmed to be G5, and three were not related to serotypes G1 t...
Localization of the 6-phosphogluconate dehydrogenase (PGD) gene in horses by in situ hybridization.
Hereditas    January 1, 1992   Volume 117, Issue 1 93-95 doi: 10.1111/j.1601-5223.1992.tb00012.x
Gu F, Harbitz I, Chowdhary BP, Chaudhary R, Gustavsson I.No abstract available
Identification of equine chromosomes in horse x mouse somatic cell hybrids.
Cytogenetics and cell genetics    January 1, 1992   Volume 61, Issue 1 58-60 doi: 10.1159/000133369
Lear TL, Trembicki KA, Ennis RB.Giemsa-11 (G-11) staining and in situ hybridization were used to identify the equine chromosome complement of horse x mouse somatic cell hybrids. The presence of horse chromosomes in somatic cell hybrids was determined by differential G-11 staining. The slides were then destained and hybridized with biotinylated total horse (Equus caballus) genomic DNA without suppression. Fluorescence detection permitted rapid confirmation of horse chromosomal DNA in the hybrid cells.
Localization of the calcium release channel gene in cattle and horse by in situ hybridization: evidence of a conserved synteny with glucose phosphate isomerase.
Animal genetics    January 1, 1992   Volume 23, Issue 1 43-50 
Chowdhary BP, Harbitz I, Davies W, Gustavsson I.In situ hybridization techniques were used to localize regionally the calcium release channel (CRC) gene on cattle and horse chromosomes, using a porcine CRC cDNA probe. In cattle, the hybridization signal peaked on the 18q23-q26 bands and in horse on the 10pter region. Previous studies have shown that the glucose phosphate isomerase (GPI) gene localizes at the same site in both species, indicating that the two loci are syntenic. As CRC and GPI are syntenic in human, pig and mouse, the present results in cattle and horse represent another example of synteny conservation in the evolution of mam...
Immune-mediated thrombocytopenia in horses infected with equine infectious anemia virus.
Journal of virology    November 1, 1991   Volume 65, Issue 11 6242-6251 doi: 10.1128/JVI.65.11.6242-6251.1991
Clabough DL, Gebhard D, Flaherty MT, Whetter LE, Perry ST, Coggins L, Fuller FJ.An adult horse infected with a virulent, cell culture-adapted strain of equine infectious anemia virus (EIAV) developed cyclical thrombocytopenia in which the nadir of platelet counts coincided with peak febrile responses. In order to investigate the mechanism of thrombocytopenia during acute febrile episodes, four adult horses were experimentally infected with the wild-type Wyoming strain of EIAV. Platelet counts decreased from baseline as rectal temperature increased. Serum reverse transcriptase activity increased above background levels in all horses, coincident with increase in rectal temp...
Genomic distribution of heterochromatic sequences in equids: implications to rapid chromosomal evolution.
The Journal of heredity    September 1, 1991   Volume 82, Issue 5 369-377 doi: 10.1093/oxfordjournals.jhered.a111106
Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ.We describe a molecular model for rapid chromosomal evolution that proposes tandemly repeated DNA sequences as a driving force. A prediction of this model is that when extensive rearrangements of euchromatin have been facilitated by heterochromatin, genomes will be characterized by tandemly repeated sequences that have actively changed chromosomal fields by intragenomic movement. Alternatively, it is proposed that in conservative chromosomal lineage each class of tandemly repeated sequences will be restricted to a specific chromosomal field. To provide baseline data to test this model we exami...
Aujeszky’s disease in a horse.
Zentralblatt fur Veterinarmedizin. Reihe B. Journal of veterinary medicine. Series B    September 1, 1990   Volume 37, Issue 7 532-538 doi: 10.1111/j.1439-0450.1990.tb01092.x
van den Ingh TS, Binkhorst GJ, Kimman TG, Vreeswijk J, Pol JM, van Oirschot JT.A horse with neurological signs and severe meningoencephalitis caused by Aujeszky's disease is described. The diagnosis was established by immunohistochemistry, DNA-in situ hybridization and serological tests. Aujeszky's disease virus antigen and Aujeszky's disease viral DNA were detected in neurons of the cerebrum. In the serum of the horse antibodies against Aujeszky's disease virus were detected in a virus neutralization test, in a blocking ELISA which specifically detects antibodies against the glycoprotein I (Ig) of the virus, in an indirect double sandwich ELISA and with colloidal gold i...
Electron microscopy of gold-labeled human and equine chromosomes.
The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society    September 1, 1989   Volume 37, Issue 9 1443-1447 doi: 10.1177/37.9.2768813
Messier PE, Drouin R, Richer CL.We present an immunochemical technique for the detection of 5-bromo-2'-deoxyuridine (BrdU) incorporated discontinuously into the chromosomal DNA. A monoclonal anti-BrdU antibody and a protein A-gold complex were used to produce chromosome banding of human and equine chromosomes, specific for electron microscopy (EM). Well-defined bands, symmetry of sister chromatids, concordance between homologues, and band patterns similar to those observed by light microscopy facilitate chromosome identification and karyotyping. From prophase to late metaphase, chromosomes condense and bands appear to fuse. ...
Repetitive DNA probes for the detection of Babesia equi.
Molecular and biochemical parasitology    April 1, 1989   Volume 34, Issue 1 75-78 doi: 10.1016/0166-6851(89)90021-2
Posnett ES, Ambrosio RE.This report describes DNA probes for the identification of Babesia equi. A genomic library of B. equi was constructed in pUC13. Several clones were identified that hybridized strongly to B. equi DNA. Clone pBE33 hybridized specifically to B. equi DNA and did not hybridize to horse DNA nor to DNA from Babesia caballi, Babesia bovis or Babesia bigemina. Two subclones of pBE33 (pSB20 and pEH21) containing B. equi repetitive sequences, could detect 0.49 ng and 0.97 ng B. equi DNA, respectively.
Localization of the equine major histocompatibility complex (ELA) to chromosome 20 by in situ hybridization.
Hereditas    January 1, 1989   Volume 110, Issue 1 93-96 doi: 10.1111/j.1601-5223.1989.tb00425.x
Mäkinen A, Chowdhary B, Mahdy E, Andersson L, Gustavsson I.No abstract available
Application of an affinity electrophoretic and in situ oxidation method to the study of the equine protease inhibitory proteins.
Electrophoresis    January 1, 1989   Volume 10, Issue 1 40-45 doi: 10.1002/elps.1150100110
Patterson SD, Bell K.An affinity method was developed to investigate the interaction between protease and protease inhibitor by incorporating a protease incubation step into a two-dimensional electrophoretic separation of the plasma protease inhibitory proteins. This involved the application of the isoelectric focusing gel to filter paper saturated in the protease of choice before being placed on the second-dimensional polyacrylamide electrophoresis gel. General protein staining or immunoblotting was used to detect the protein or ligand in the complex. An in situ oxidation method was developed using the reagent ch...
Conserved repetitive DNA sequences (Bkm) in normal equine males and sex-reversed females detected by in situ hybridization.
Cytogenetics and cell genetics    January 1, 1988   Volume 48, Issue 2 99-102 doi: 10.1159/000132599
Kent MG, Elliston KO, Shroeder W, Guise KS, Wachtel SS.In situ hybridization with a cloned banded krait sex-specific repetitive DNA probe (Bkm) indicates a high concentration of Bkm sequences on the horse Y chromosome in both normal XY males and XY sex-reversed females. Lesser, but still significant, concentrations of Bkm sequences were mapped to horse chromosomes 3, 4, and 30.
Chromosomal localization of the major histocompatibility complex of the horse (ELA) by in situ hybridization.
Immunogenetics    January 1, 1988   Volume 28, Issue 5 362-364 doi: 10.1007/BF00364235
Ansari HA, Hediger R, Fries R, Stranzinger G.The first gene assignment to a horse chromosome is reported for equine leucocyte antigen (ELA), the major histocompatibility complex of the horse. A cloned DNA sequence derived from a class I gene of the porcine major histocompatibility complex was used as a probe for an in situ hybridization experiment. We present the regional localization of ELA, using this sequence, to equine chromosome 20q14-q22.
Light and electron microscopy of Ag-NORs in domestic horse chromosomes identified after R-banding.
Cytobios    January 1, 1987   Volume 49, Issue 196 23-30 
Romagnano A, Richer CL, Messier PE, Jean P.Silver staining shows the presence in the domestic horse of six NORs located on chromosomes 1, 26 and 31 as identified after R-banding. Following electron microscopy, the argyrophilic material was observed outside the terminal secondary constrictions (satellite stalks) on the terminal portion of the short arm of chromosome 1, outside the secondary constrictions on the proximal region of the long arms of chromosome 31, and beside the proximal region of the long arms of chromosome 26. Satellite staining applied to these chromosomes appears to reveal only the active NORs.
Cloning and characterization of an equine cutaneous papillomavirus.
Virology    July 15, 1986   Volume 152, Issue 1 100-109 doi: 10.1016/0042-6822(86)90375-2
O'Banion MK, Reichmann ME, Sundberg JP.Equine papillomaviruses (EqPV) from naturally occurring cases of cutaneous papillomatosis in several ponies and one horse were isolated, cloned, and characterized. Group specific papillomavirus structural antigens were detected in sections of the papillomas by the peroxidase-antiperoxidase technique, and virions were observed in the in the nuclei of cells in the stratum granulosum and corneum. Negatively stained virions purified from papilloma homogenates by isopycnic CsCl centrifugation were 55 nm in diameter and had typical papillomavirus morphology. The entire viral genomes of two separate ...
DNA polymorphism in the major histocompatibility complex of man and various farm animals.
Animal genetics    January 1, 1986   Volume 17, Issue 2 113-133 doi: 10.1111/j.1365-2052.1986.tb00732.x
Vaiman M, Chardon P, Cohen D.In the past few years it has been possible by combining enzymatic cleavage of genomic DNA and the Southern blot hybridization technique to explore the endonuclease recognition site polymorphism of the MHC. HLA class I and DR and DQ alpha and beta class II specific probes as well as human C4 and Bf class III probes were used. All these probes were shown to cross-hybridize with DNA from pigs, cattle, sheep and horses. Hybridization of human genomic DNA with a class I probe showed 15-25 bands per genome depending on the enzyme used. Distinct endonucleases generated clusters of restriction fragmen...
Sequences of papillomavirus DNA in equine sarcoids.
Equine veterinary journal    November 1, 1985   Volume 17, Issue 6 449-452 doi: 10.1111/j.2042-3306.1985.tb02553.x
Trenfield K, Spradbrow PB, Vanselow B.DNA was extracted from 14 equine sarcoids, electrophoresed and hybridised with a radioactively labelled probe of bovine papillomavirus type I (BPV 1) DNA under conditions of low stringency. Twelve sarcoids contained sequences of DNA that hybridised with the probe and that comigrated with BPV 2 DNA. The viral DNAs in four of these sarcoids differed from BPV 1 and BPV 2 DNA on restriction endonuclease analysis. One of four cell lines derived from sarcoids also contained BPV 1 related DNA. The results confirm the frequent presence in equine sarcoids of unintegrated papillomaviral DNA and suggest ...
Investigations of the in situ bag technique and a comparison of the fermentation in heifers, sheep, ponies and rabbits.
Journal of animal science    January 1, 1984   Volume 58, Issue 1 213-221 doi: 10.2527/jas1984.581213x
Udén P, Van Soest PJ.Fiber fermentation using the in situ bag technique was studied in a hay-fed cow. Entry of fine particles into bags of varying pore size, the effect of sample size, rumen contractions, bag porosity and rumen contraction (bags suspended in vitro or in situ) and obstruction of liquid flow through the bag cloth were investigated (Exp. 1). In Exp. 2 fiber degradation in vitro and in situ with 5- and 37-micron pore size bags was measured utilizing six fistulated heifers (four large: 610 kg and two small: 243 kg), two sheep and two goats (30 kg), three ponies (130 kg) and four rabbits (3.2 kg). Degra...