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Topic:Nucleotides

Nucleotides are organic molecules that serve as the building blocks of nucleic acids, such as DNA and RNA, in horses. They are composed of a nitrogenous base, a sugar, and one or more phosphate groups. Nucleotides are essential for various biological processes, including energy transfer, cell signaling, and the synthesis of nucleic acids. In equine biology, nucleotides contribute to genetic information storage and transmission, cellular metabolism, and physiological regulation. This page compiles peer-reviewed research studies and scholarly articles that explore the structure, function, and impact of nucleotides on equine health and performance.
Mitochondrial DNA D-loop hyper-variable region 1 variability in Kurdish horse breed.
Veterinary medicine and science    November 11, 2022   Volume 9, Issue 2 721-728 doi: 10.1002/vms3.996
Nikbakhsh M, Varkoohi S, Seyedabadi HR.Kurdish horse is one of the most valuable horse genetic resources in the Middle East. To assess the genetic diversity of Kurdish horses, Mitochondrial DNA D-loop hyper-variable region1 (HVR1) was sequenced in 29 non-related Kurdish horses which were sampled from diverse geographic regions of Iran. Total DNA was extracted from the collected blood samples by modified salting out method. The HVR1 was amplified by PCR and then sequenced using ABI PRISM BigDyeTM Terminator Cycle Sequencing Ready Reaction Kit. Consequently, the sequences were trimmed to 294 bp using BIOEDIT to become comparable wit...
16S rDNA and ITS Sequence Diversity of Burkholderia mallei Isolated from Glanders-Affected Horses and Mules in India (2013-2019).
Current microbiology    December 18, 2021   Volume 79, Issue 1 31 doi: 10.1007/s00284-021-02701-8
Shanmugasundaram K, Singha H, Saini S, Tripathi BN.Glanders is a highly contagious and fatal infection of equids caused by the bacteria known as Burkholderia mallei. It is one of the notifiable equine diseases and is still present in Asia, South America and Africa. In India, glanders re-emerged in 2006, and thereafter, increasing numbers of cases were reported in different regions of the country. Between 2013 and 2019, 39 B. mallei were isolated from glanders-affected horses (n = 30) and mules (n = 9) from seven states of India such as Uttar Pradesh, Haryana, Delhi, Himachal Pradesh, Gujarat, Maharashtra and Tamil Nadu. In this study, ...
Comparison of five basal compositions of selective chocolate agar media for isolation of Taylorella equigenitalis.
Journal of equine veterinary science    December 4, 2021   Volume 110 103829 doi: 10.1016/j.jevs.2021.103829
Breuil MF, Joseph M, Petry S.The gold standard method to isolate and identify Taylorella equigenitalis, the contagious agent of equine metritis, is the culture method according to the World Organisation for Animal Health Terrestrial Manual. No selective T. equigenitalis chocolate agar medium has been developed since the 1980s and the existing media show limited performances due to the fastidious nature of T. equigenitalis and the presence of interfering bacteria in the genital tract of equines. Here, the growth rates of 6 T. equigenitalis strains and 7 non-T. equigenitalis strains were compared on Timoney's selective medi...
Expression of microRNAs in Horse Plasma and Their Characteristic Nucleotide Composition.
PloS one    January 5, 2016   Volume 11, Issue 1 e0146374 doi: 10.1371/journal.pone.0146374
Lee S, Hwang S, Yu HJ, Oh D, Choi YJ, Kim MC, Kim Y, Ryu DY.MicroRNAs (miRNAs) in blood plasma are stable under high levels of ribonuclease activity and could function in tissue-to-tissue communication, suggesting that they may have distinctive structural characteristics compared with non-circulating miRNAs. In this study, the expression of miRNAs in horse plasma and their characteristic nucleotide composition were examined and compared with non-plasma miRNAs. Highly expressed plasma miRNA species were not part of the abundant group of miRNAs in non-plasma tissues, except for the eca-let-7 family. eca-miR-486-5p, -92a, and -21 were among the most abund...
Complete genome sequences of T5-related Escherichia coli bacteriophages DT57C and DT571/2 isolated from horse feces.
Archives of virology    September 9, 2015   Volume 160, Issue 12 3133-3137 doi: 10.1007/s00705-015-2582-0
Golomidova AK, Kulikov EE, Prokhorov NS, Guerrero-Ferreira RC, Ksenzenko VN, Tarasyan KK, Letarov AV.We report the complete genome sequencing of two Escherichia coli T5-related bacteriophages, DT57C and DT571/2, isolated from the same specimen of horse feces. These two isolates share 96% nucleotide sequence identity and can thus be considered representatives of the same novel species within the genus T5likevirus. The observed variation in the ltfA gene of these phages, resulting from a recent recombination event, may explain the observed host-range differences, suggesting that a modular mechanism makes a significant contribution to the short-term evolution (or adaptation) of T5-like phage gen...
Host associated polymorphisms in the Corynebacterium pseudotuberculosis rpoB gene sequence.
Veterinary microbiology    March 21, 2011   Volume 151, Issue 3-4 400-403 doi: 10.1016/j.vetmic.2011.03.012
Retamal P, Ríos M, Cheuquepán F, Abalos P, Pizarro-Lucero J, Borie C, Gutierrez J.Corynebacterium pseudotuberculosis is a widespread facultative intracellular pathogen that causes caseous lymphadenitis disease in sheep and goats, and generates cutaneous abscesses and granulomas in horses and cattle. Although some genes have been studied for diagnostic and phylogenetic analysis within the genus Corynebacterium, at subspecies level the pathogen has been poorly analyzed. The aim of this study was to characterize C. pseudotuberculosis strains isolated from domestic animals, through the sequencing of a hypervariable rpoB gene segment. As result, there were identified host associ...
Horse domestication and conservation genetics of Przewalski’s horse inferred from sex chromosomal and autosomal sequences.
Molecular biology and evolution    October 17, 2008   Volume 26, Issue 1 199-208 doi: 10.1093/molbev/msn239
Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD.Despite their ability to interbreed and produce fertile offspring, there is continued disagreement about the genetic relationship of the domestic horse (Equus caballus) to its endangered wild relative, Przewalski's horse (Equus przewalskii). Analyses have differed as to whether or not Przewalski's horse is placed phylogenetically as a separate sister group to domestic horses. Because Przewalski's horse and domestic horse are so closely related, genetic data can also be used to infer domestication-specific differences between the two. To investigate the genetic relationship of Przewalski's hors...
Highly diverse type of equine arteritis virus (EAV) from the semen of a South African donkey: short communication.
Acta veterinaria Hungarica    July 18, 2006   Volume 54, Issue 2 263-270 doi: 10.1556/AVet.54.2006.2.12
Stadejek T, Mittelholzer Ch, Oleksiewicz MB, Paweska J, Belák S.Equine arteritis virus (EAV) was detected by RT-nested PCR in semen samples from a naturally infected South African donkey. Sequence analysis of the amplified ORF5 fragment revealed only 60 to 70% nucleotide identity to a panel of EAV reference sequences. The unique donkey EAV sequence was also found to be stable during passage in horses. The sequence data reported in this study indicate that the South African donkey variant might represent a new genotype of EAV. The distinct genetic properties of the South African asinine strain of EAV suggest a divergent evolution of this arterivirus in vari...
Fixed nucleotide differences on the Y chromosome indicate clear divergence between Equus przewalskii and Equus caballus.
Animal genetics    December 23, 2003   Volume 34, Issue 6 453-456 doi: 10.1046/j.0268-9146.2003.01044.x
Wallner B, Brem G, Müller M, Achmann R.The phylogenetic relationship between Equus przewalskii and E. caballus is often a matter of debate. Although these taxa have different chromosome numbers, they do not form monophyletic clades in a phylogenetic tree based on mtDNA sequences. Here we report sequence variation from five newly identified Y chromosome regions of the horse. Two fixed nucleotide differences on the Y chromosome clearly display Przewalski's horse and domestic horse as sister taxa. At both positions the Przewalski's horse haplotype shows the ancestral state, in common with the members of the zebra/ass lineage. We discu...
Characterization of the horse (Equus caballus) IGHA gene.
Immunogenetics    October 15, 2003   Volume 55, Issue 8 552-560 doi: 10.1007/s00251-003-0617-2
Wagner B, Greiser-Wilke I, Antczak DF.Nucleotide sequences of the immunoglobulin constant heavy chain genes of the horse have been described for IGHM, IGHG and IGHE genes, but not for IGHA. Here, we provide the nucleotide sequence of the genomic IGHA gene of the horse ( Equus caballus), including its secretion region and the transmembrane exon. The equine IGHA gene shows the typical structure of a mammalian IGHA gene, with only three exons, separated by two introns of similar size. The hinge exon is located at the 5' end of the CH2 exon and encodes a hinge region of 11 amino acids, which contains five proline residues. The coding ...
Molecular cloning, nucleotide sequence and presence of multiple functional polyadenylation signals in the 3′-untranslated region of equine dopamine beta-hydroxylase cDNA.
DNA sequence : the journal of DNA sequencing and mapping    February 21, 2003   Volume 13, Issue 5 257-262 doi: 10.1080/1042517021000013553
Sato F, Hasegawa T, Katayama Y, Ishida N.Complementary DNA (cDNA) encoding equine dopamine beta-hydroxylase (DBH) was amplified with a combination of reverse transcription-polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE) method, and their nucleotide sequences (Accession No. AB029430: the DDBJ nucleotide sequence database) was determined. A total of 3842 bp cDNA sequence was consisted with 5 bp of 5' flanking untranslated sequence, 1833 bp of open reading frame encoding 610 amino acids, and 2004 bp of 3' flanking untranslated sequence. The deduced amino acid sequence of equine DBH was very similar to the ...
Nucleotide sequences of glycoprotein I and E genes of equine herpesvirus type 4.
The Journal of veterinary medical science    April 3, 1998   Volume 60, Issue 2 219-225 doi: 10.1292/jvms.60.219
Damiani AM, Matsumura T, Yokoyama N, Maeda K, Miyazawa T, Kai C, Mikami T.The nucleotide sequences of the glycoprotein I (gI) and E (gE) genes of equine herpesvirus type 4 (EHV-4) strain TH20 were determined. The predicted region encoding the EHV-4 gI gene is 1,263 nucleotides, corresponding to a polypeptide of 420 amino acids in length. The predicted region encoding the EHV-4 gE gene is 1,647 nucleotides, corresponding to a polypeptide of 548 amino acids in length. The EHV-4 gI and gE genes show 74% and 85% identity at the amino acid level with those of equine herpesvirus type 1 (EHV-1), respectively. Furthermore, we have found an open reading frame homologous to t...
Phylogenetic analysis of open reading frame 5 of field isolates of equine arteritis virus and identification of conserved and nonconserved regions in the GL envelope glycoprotein.
Virology    December 20, 1995   Volume 214, Issue 2 690-697 doi: 10.1006/viro.1995.0087
Balasuriya UB, Timoney PJ, McCollum WH, MacLachlan NJ.The variation and phylogenetic relationship of open reading frame 5 (ORF5) of 3 different laboratory strains of the original prototype Bucyrus strain of equine arteritis virus (EAV), the modified live virus vaccine (ARVAC, Fort Dodge Laboratories), and 18 field isolates of EAV from North America and Europe were determined by comparison of their gene sequences. The viruses differed from the published sequence by between 3 (99.6% homology) and 94 (87.8%) nucleotides and by between 3 (98.8%) and 24 (90.6%) amino acids. The field isolates differed from each other by between 2 (99.7%) and 110 (85.7...
Sequence analyses of the p24 gene of Borna disease virus in naturally infected horse, donkey and sheep.
Virus research    December 1, 1994   Volume 34, Issue 3 281-289 doi: 10.1016/0168-1702(94)90128-7
Binz T, Lebelt J, Niemann H, Hagenau K.By reverse transcriptase/PCR amplification and subsequent sequence determination of the p24 gene, the relatedness of Borna disease virus (BDV) in various naturally infected animal species was determined. These results are indicative of a common ancestral virus pool and a remarkably low species barrier of BDV. Comparison of 11 sequences to that of tissue culture adapted virus revealed that the homology among all isolates was at least 96.2% at the nucleotide level, and 97% at the amino acid level. Viral sequences from sheep, donkey and horse were found to be not more distantly related to each ot...
Apolipoprotein B mRNA editing in 12 different mammalian species: hepatic expression is reflected in low concentrations of apoB-containing plasma lipoproteins.
Journal of lipid research    August 1, 1993   Volume 34, Issue 8 1367-1383 
Greeve J, Altkemper I, Dieterich JH, Greten H, Windler E.Two different isoproteins are encoded by the apolipoprotein (apo) B gene, apoB-48 and apoB-100. ApoB-48, core component of intestinally derived chylomicrons, has an accelerated plasma turnover as compared with the full-length protein apoB-100. A posttranscriptional modification of the apoB mRNA by conversion of cytidine into uridine at nucleotide position 6666 changes the genomically encoded glutamine codon CAA at amino acid residue 2153 into a translational stop codon UAA. This mRNA editing explains the formation of the truncated isoform apoB-48. In the present investigation editing of apoB m...
Evolution of the herpes thymidine kinase: identification and comparison of the equine herpesvirus 1 thymidine kinase gene reveals similarity to a cell-encoded thymidylate kinase.
Nucleic acids research    December 9, 1988   Volume 16, Issue 23 11303-11317 doi: 10.1093/nar/16.23.11303
Robertson GR, Whalley JM.We have identified the equine herpesvirus 1 (EHV-1) thymidine kinase gene (TK) by DNA-mediated transformation and by DNA sequencing. Alignment of the amino acid sequence of the EHV-1 TK with the TKs from 3 other herpesviruses revealed regions of homology, some of which correspond to the previously identified substrate binding sites, while others have as yet, no assigned function. In particular, the strict conservation of an aspartate within the proposed nucleoside binding site suggests a role in ATP binding for this residue. Comparison of 5 herpes TKs with the thymidylate kinase of yeast revea...
Nucleotide sequence of the 26 S mRNA of the virulent Trinidad donkey strain of Venezuelan equine encephalitis virus and deduced sequence of the encoded structural proteins.
Virology    July 30, 1986   Volume 152, Issue 2 400-413 doi: 10.1016/0042-6822(86)90142-x
Kinney RM, Johnson BJ, Brown VL, Trent DW.A cDNA clone containing all of the 26 S mRNA coding region of the RNA genome of Venezuelan equine encephalitis (VEE) virus, virulent strain Trinidad donkey (TRD), has been constructed and sequenced. The nucleotide and deduced amino acid sequences of the 26 S RNA of VEE virus conform to the general organization of the alphavirus subgenomic mRNA. Excluding the poly(A) tail, the VEE 26 S RNA is 3913 nucleotides long with a protein coding region of 3762 nucleotides. Codon usage in the translated region is nonrandom and correlates well with that reported for Sindbis (SIN), Semliki Forest (SF), and ...
Concentration of nucleotides in peripheral blood lymphocytes of various mammalian species.
Advances in experimental medicine and biology    January 1, 1984   Volume 165 Pt B 125-128 doi: 10.1007/978-1-4757-0390-0_25
De Abreu RA, Peters GJ, Veerkamp JH.No abstract available
Uptake of nucleotides and catecholamines by chromaffin granules from pig and horse adrenal medulla.
Journal of neurochemistry    July 1, 1980   Volume 35, Issue 1 270-272 doi: 10.1111/j.1471-4159.1980.tb12516.x
Carmichael SW, Weber A, Winkler H.The uptake of nucleotides and catecholamines into chromaffin granules from adrenals of pigs and horses is similar to that previously seen in bovine chromaffin granules. The rate of [3H]ATP uptake at 2 mM-ATP concentration was 0.42 +/- 0.06 and 0.15 +/- 0.02 nmol/mg protein/min for pig and horse granules, respectively. The apparent Km's were 1.37 mM for pig granules, 0.89 mM for horse granules, and 1.2 mM for ox granules. The sensitivity of the uptake for nucleotides and catecholamine to specific inhibitors was found to be similar in granules from pig and ox, indicating that the same mechanisms...
Synthesis of long complementary DNA in the endogenous reaction by equine infectious anemia virus.
Journal of virology    March 1, 1979   Volume 29, Issue 3 907-914 doi: 10.1128/JVI.29.3.907-914.1979
Rice NR, Coggins L.In the endogenous reverse transcriptase reaction, equine infectious anemia virus is able to synthesize complementary DNA (cDNA) of 8,000 nucleotides in high yield. After 2 h in 50 muM dNTP, about 2.8 mug of cDNA per mg of protein is produced, almost 30% of which is long cDNA. The system thus compares favorably with the other two well-characterized endogenous reaction systems, Moloney murine leukemia virus and avian sarcoma virus. Elongation rates of 100 to 150 nucleotides per min have been observed; these rates are comparable to those seen with purified avian myeloblastosis virus reverse trans...
Acid-soluble phosphorus compounds in mammalian semen.
The Biochemical journal    August 1, 1970   Volume 118, Issue 5 851-857 doi: 10.1042/bj1180851
Brooks DE.1. A method is described for the extraction, purification and separation of acid-soluble phosphorus compounds from mammalian semen. [8-(14)C]ATP and [8-(14)C]AMP were used as internal recovery standards to measure the breakdown and loss of these nucleotides in the procedure. 2. Bull, ram, boar and stallion semen was separated into seminal plasma and spermatozoa and the two fractions were examined separately. The overall composition of the mixture of the phosphorus compounds extracted from the two fractions was similar for the four species. 3. Glycerylphosphorylcholine and glycerylphosphorylino...
Acid-Soluble Nucleotides of Colostrum, Milk, and Mammary Gland.
Journal of biochemistry    November 1, 1963   Volume 54 388-397 doi: 10.1093/oxfordjournals.jbchem.a127804
JOHKE T.This research article investigates the differences in acid-soluble nucleotides in the milk of various species including cows, goats, mares, and humans through different stages of lactation, and compares the nucleotide […]