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Topic:Species Comparison

Species comparison in horses involves examining the physiological, anatomical, and behavioral differences and similarities between horses and other animal species. This area of study can provide insights into the evolutionary adaptations and ecological roles of horses. Researchers often focus on aspects such as digestive systems, locomotion, sensory capabilities, and social structures to understand how horses have evolved to meet their environmental and survival needs. Comparative studies may also explore genetic differences and similarities, contributing to a broader understanding of species evolution and adaptation. This page aggregates peer-reviewed research and scholarly articles that analyze various aspects of species comparison involving horses, highlighting significant findings and methodologies used in the field.
Ancient Patrilineal Lines and Relatively High ECAY Diversity Preserved in Indigenous Horses Revealed With Novel Y-Chromosome Markers.
Frontiers in genetics    May 21, 2020   Volume 11 467 doi: 10.3389/fgene.2020.00467
Liu S, Yang Y, Pan Q, Sun Y, Ma H, Liu Y, Wang M, Zhao C, Wu C.Extremely low nucleotide diversity of modern horse Y-chromosome has been reported, and only poor phylogenetic resolution could be resulted from limited Y-chromosome markers. In this study, three types of horse Y-chromosome markers, including Single-nucleotide polymorphisms (SNPs), copy number variants (CNVs), and allele-specific CNVs, were developed by screening more than 300 male horses from 23 indigenous Chinese horse populations and 4 imported horse breeds. Fourteen segregating sites including a novel SNP in the AMELY gene were found in approximately 53 kb of male-specific Y-chromosome sequ...
Signatures of selection analysis using whole-genome sequence data reveals novel candidate genes for pony and light horse types.
Genome    May 14, 2020   Volume 63, Issue 8 387-396 doi: 10.1139/gen-2020-0001
Salek Ardestani S, Aminafshar M, Zandi Baghche Maryam MB, Banabazi MH, Sargolzaei M, Miar Y.Natural selection and domestication have shaped modern horse populations, resulting in a vast range of phenotypically diverse breeds. Horse breeds are classified into three types (pony, light, and draft) generally based on their body type. Understanding the genetic basis of horse type variation and selective pressures related to the evolutionary trend can be particularly important for current selection strategies. Whole-genome sequences were generated for 14 pony and 32 light horses to investigate the genetic signatures of selection of the horse type in pony and light horses. In the overlappin...
Absence of Strong Genetic Linkage Disequilibrium between Single Nucleotide Polymorphisms (SNPs) in the Prion Protein Gene (PRNP) and the Prion-Like Protein Gene (PRND) in the Horse, a Prion-Resistant Species.
Genes    May 7, 2020   Volume 11, Issue 5 518 doi: 10.3390/genes11050518
Won SY, Kim YC, Do K, Jeong BH.Prion disease is a fatal neurodegenerative disorder caused by a deleterious prion protein (PrP). However, prion disease has not been reported in horses during outbreaks of transmissible spongiform encephalopathies (TSEs) in various animals in the UK. In previous studies, single nucleotide polymorphisms (SNPs) in the prion protein gene () have been significantly associated with susceptibility to prion disease, and strong linkage disequilibrium (LD) between and prion-like protein gene () SNPs has been identified in prion disease-susceptible species. On the other hand, weak LD values have been r...
The complexity of clinically-normal sinus-rhythm ECGs is decreased in equine athletes with a diagnosis of paroxysmal atrial fibrillation.
Scientific reports    April 22, 2020   Volume 10, Issue 1 6822 doi: 10.1038/s41598-020-63343-7
Alexeenko V, Fraser JA, Bowen M, Huang CL, Marr CM, Jeevaratnam K.Equine athletes have a pattern of exercise which is analogous to human athletes and the cardiovascular risks in both species are similar. Both species have a propensity for atrial fibrillation (AF), which is challenging to detect by ECG analysis when in paroxysmal form. We hypothesised that the proarrhythmic background present between fibrillation episodes in paroxysmal AF (PAF) might be detectable by complexity analysis of apparently normal sinus-rhythm ECGs. In this retrospective study ECG recordings were obtained during routine clinical work from 82 healthy horses and from 10 horses with a ...
Evidence that human and equine erythrocytes could have significant roles in the transport and delivery of amino acids to organs and tissues.
Amino acids    April 21, 2020   Volume 52, Issue 5 711-724 doi: 10.1007/s00726-020-02845-0
Thorn B, Dunstan RH, Macdonald MM, Borges N, Roberts TK.Erythrocytes have a well-defined role in the gaseous exchange of oxygen and carbon dioxide in the mammalian body. The erythrocytes can contain more than half of the free amino acids present in whole blood. Based on measures showing that venous erythrocyte levels of amino acids are much less than arterial erythrocyte levels, it has previously been proposed that erythrocytes also play a role in the delivery of amino acids to tissues in the body. This role has been dismissed because it has been assumed that to act as an amino acid transport vehicle, the erythrocytes should release their entire a...
A missense mutation in ASIP is associated with light point variation in donkeys.
Animal genetics    April 20, 2020   Volume 51, Issue 4 629 doi: 10.1111/age.12940
Yu Y, Shang S, Zhang X, Wang Z, Dang W, Zhang J, Zhu Y, Dang R, Irwin DM, Zhang S.No abstract available
Insertion of Telomeric Repeats in the Human and Horse Genomes: An Evolutionary Perspective.
International journal of molecular sciences    April 18, 2020   Volume 21, Issue 8 2838 doi: 10.3390/ijms21082838
Santagostino M, Piras FM, Cappelletti E, Del Giudice S, Semino O, Nergadze SG, Giulotto E.Interstitial telomeric sequences (ITSs) are short stretches of telomeric-like repeats (TTAGGG)n at nonterminal chromosomal sites. We previously demonstrated that, in the genomes of primates and rodents, ITSs were inserted during the repair of DNA double-strand breaks. These conclusions were derived from sequence comparisons of ITS-containing loci and ITS-less orthologous loci in different species. To our knowledge, insertion polymorphism of ITSs, i.e., the presence of an ITS-containing allele and an ITS-less allele in the same species, has not been described. In this work, we carried out a gen...
Female horses spontaneously identify a photograph of their keeper, last seen six months previously.
Scientific reports    April 14, 2020   Volume 10, Issue 1 6302 doi: 10.1038/s41598-020-62940-w
Lansade L, Colson V, Parias C, Trösch M, Reigner F, Calandreau L.Horses are capable of identifying individual conspecifics based on olfactory, auditory or visual cues. However, this raises the questions of their ability to recognize human beings and on the basis of what cues. This study investigated whether horses could differentiate between a familiar and unfamiliar human from photographs of faces. Eleven horses were trained on a discrimination task using a computer-controlled screen, on which two photographs were presented simultaneously (32 trials/session): touching one was rewarded (S+) and the other not (S-). In the training phase, the S+ faces were of...
Lineal Discrimination of Horses and Mules. A Sympatric Case from Arauca, Colombia.
Animals : an open access journal from MDPI    April 13, 2020   Volume 10, Issue 4 679 doi: 10.3390/ani10040679
Salamanca-Carreño A, Jordana J, Crosby-Granados RA, Bentez-Molano J, Parés-Casanova PM.This is the first morphological comparative study between local horses and mules from Arauca, Colombia. It was realized to compare morphological traits between both species by analysing 15 adult mules (7 males and 8 females) and 150 adult horses (137 males and 13 females), with an age interval from 2 to 22 years. Data consisted of 24 different body quantitative traits which can explain the body conformation: thoracic circumference, body length (BL), thoracic depth and width, withers height (WH), sternum height, shoulders width, chest width, forelimb cannon perimeter and length, head length and...
Author Correction: Spotted phenotypes in horses lost attractiveness in the Middle Ages.
Scientific reports    April 10, 2020   Volume 10, Issue 1 6469 doi: 10.1038/s41598-020-62905-z
Wutke S, Benecke N, Sandoval-Castellanos E, Döhle HJ, Friederich S, Gonzalez J, Hallsson JH, Hofreiter M, Lõugas L, Magnell O, Morales-Muniz A....An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Animal domestication in the era of ancient genomics.
Nature reviews. Genetics    April 7, 2020   Volume 21, Issue 8 449-460 doi: 10.1038/s41576-020-0225-0
Frantz LAF, Bradley DG, Larson G, Orlando L.The domestication of animals led to a major shift in human subsistence patterns, from a hunter-gatherer to a sedentary agricultural lifestyle, which ultimately resulted in the development of complex societies. Over the past 15,000 years, the phenotype and genotype of multiple animal species, such as dogs, pigs, sheep, goats, cattle and horses, have been substantially altered during their adaptation to the human niche. Recent methodological innovations, such as improved ancient DNA extraction methods and next-generation sequencing, have enabled the sequencing of whole ancient genomes. These gen...
The Oxidative Stress Markers of Horses-the Comparison with Other Animals and the Influence of Exercise and Disease.
Animals : an open access journal from MDPI    April 3, 2020   Volume 10, Issue 4 617 doi: 10.3390/ani10040617
Shono S, Gin A, Minowa F, Okubo K, Mochizuki M.Diacron-reactive oxygen metabolite (d-ROM) and biological antioxidant potential (BAP) levels in the serum of horses were measured (ponies, = 15; thoroughbred, = 31; other full-sized horses, = 7). The mean d-ROM levels in horses were significantly higher ( < 0.001) than those in dairy cattle ( = 25) and dogs ( = 31). However, d-ROM levels in horses were lower than the standard levels reported in humans. When d-ROM and BAP levels were plotted graphically, the points for horses with a disease (ringbone in 1 Japanese sports horse, cellulitis in 1 thoroughbred, melanoma in 1 Lipizzaner) fell ...
Characterization and phylogenetic analysis of the first complete mitochondrial genome of Cylicocyclus radiatus.
Veterinary parasitology    April 3, 2020   Volume 281 109097 doi: 10.1016/j.vetpar.2020.109097
Hu L, Zhang M, Sun Y, Bu Y.Cylicocyclus spp. are common parasites in the intestine of equine animals. Hosts infected by these strongylid nematodes might face emaciation, anemia, and even death, all of which lead to significant economic losses. In the present study, the complete mitochondrial genome (mitogenome) of Cylicocyclus radiatus, the type species of the genus Cylicocyclus, was sequenced and characterized for the first time using next-generation sequencing technology. Results show that the mitogenome of C. radiatus is a double-stranded 13,836 bp circular molecule, containing 12 protein-coding genes, 22 tRNA genes,...
Sequence characterization and N-glycoproteomics of secretory immunoglobulin A from donkey milk.
International journal of biological macromolecules    April 3, 2020   Volume 155 605-613 doi: 10.1016/j.ijbiomac.2020.03.253
Gnanesh Kumar BS, Rawal A.Secretory immunoglobulin A (sIgA) is the major antibody present in the human milk where it confers passive immunity to neonates. Other than human, non-ruminants such as equine, swine etc., also possess sIgA in milk but detailed characterization is limited. In the present study, we characterized sIgA from donkey milk for amino acid sequence and N-glycosylation through LC-MS/MS analysis. The complete amino acid sequence of alpha chain constant region (C) was elucidated. The sequence analysis of variable regions (V and V) and light chain constant region (C) showed several amino acid substitutions...
Domesticated equine species and their derived hybrids differ in their fecal microbiota.
Animal microbiome    March 16, 2020   Volume 2, Issue 1 8 doi: 10.1186/s42523-020-00027-7
Edwards JE, Schennink A, Burden F, Long S, van Doorn DA, Pellikaan WF, Dijkstra J, Saccenti E, Smidt H.Compared to horses and ponies, donkeys have increased degradation of dietary fiber. The longer total mean retention time of feed in the donkey gut has been proposed to be the basis of this, because of the increased time available for feed to be acted upon by enzymes and the gut microbiota. However, differences in terms of microbial concentrations and/or community composition in the hindgut may also underpin the increased degradation of fiber in donkeys. Therefore, a study was conducted to assess if differences existed between the fecal microbiota of pony, donkey and hybrids derived from them (...
Gut Microbiomes of Endangered Przewalski’s Horse Populations in Short- and Long-Term Captivity: Implication for Species Reintroduction Based on the Soft-Release Strategy.
Frontiers in microbiology    March 12, 2020   Volume 11 363 doi: 10.3389/fmicb.2020.00363
Tang L, Li Y, Srivathsan A, Gao Y, Li K, Hu D, Zhang D.Captivity maybe the only choice for survival of many endangered vertebrates, and understanding its broad effects is important for animal management and conservation, including breeding endangered species for subsequent release. Extreme environmental changes during captivity may influence survival ability in the wild. Captivity decreases gut bacterial diversity in a wide range of animals. However, most studies directly compare animals living in captivity with those in the wild, and there is a lack of understanding of effects of gradient shift in lifestyle during species reintroduction based on ...
Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments of Mongolian horses.
MicrobiologyOpen    March 9, 2020   Volume 9, Issue 6 1085-1101 doi: 10.1002/mbo3.1020
Su S, Zhao Y, Liu Z, Liu G, Du M, Wu J, Bai D, Li B, Bou G, Zhang X, Dugarjaviin M.The intestinal microbiota plays an important role in the health and metabolism of the host. Next-generation sequencing technology has enabled the characterization of the gut microbiota of several animal species. We analyzed the intestinal microbiota in six different parts of the gastrointestinal tracts (GITs) of five Mongolian horses by sequencing the 16S rRNA gene V3-V4 hypervariable region. All horses were kept in the natural habitat of the Inner Mongolia grassland. Significant differences were observed among the microbiota compositions of the distinct GIT regions. In addition, while the mic...
A comparative study on the equine and camelid antivenoms upon cardiovascular changes induced with Hemiscorpius lepturus venom in rats.
Iranian journal of basic medical sciences    March 7, 2020   Volume 22, Issue 12 1440-1444 doi: 10.22038/IJBMS.2019.14052
Fatemikia H, Kamyab M, Movahed A, Sadeghi M, Kim E, Behdani M, Mohammadpour Dounighi N, Shahrivar M, Seyedian R.In this study, the neutralizing abilities of the equine and the recently introduced camelid antivenoms on the hemodynamic parameters (inotropism, chronotropism, and arrhythmogenicity) were assessed following envenomation by venom in rats. Methods: At first, the electrophoretic profiles of both products were obtained by using the SDS-PAGE method (12.5%) and stained with Coomassie blue and silver nitrate. Secondly, different doses of the camelid antivenom (10, 50, and 100 µl) were given intravenously in 10 min before venom injection (400 µg/rat). The neutralizing potencies of camelid and equi...
Levelling playing field: synchronization and rapid facial mimicry in dog-horse play.
Behavioural processes    March 7, 2020   Volume 174 104104 doi: 10.1016/j.beproc.2020.104104
Maglieri V, Bigozzi F, Riccobono MG, Palagi E.Social play is a window on cognitive and communicative abilities of species. Inter-specific play, in particular, is a fertile venue to explore the capacity to correctly perceive and interpret signals emitted by partners. Up to now, most studies have focussed on dog-human play due to the important implications such studies have in understanding the peculiar relationship we establish with our pets. Here, we focussed on social play between dogs and horses. By using a set of specific keywords (dog, horse, play, friend) we selected 20 videos of dog-horse social play (with each session lasting >3...
Pulmonary vein firing initiating atrial fibrillation in the horse: Oversized dimensions but similar mechanisms.
Journal of cardiovascular electrophysiology    March 5, 2020   Volume 31, Issue 5 1211-1212 doi: 10.1111/jce.14422
Linz D, Hesselkilde E, Kutieleh R, Jespersen T, Buhl R, Sanders P.Atrial fibrillation is triggered by the pulmonary veins in humans. Although atrial fibrillation is known to occur in other species, the mechanisms of disease in these are not known. Here we present evidence for pulmonary vein triggers in the horse, where 3D HD Grid mapping was undertaken in the conscious state in the absence of fluoroscopy.
Molecular sexing and preliminary assessment of population sex ratio of the endangered Malayan tapir (Tapirus indicus) in Peninsular Malaysia.
Scientific reports    March 4, 2020   Volume 10, Issue 1 3973 doi: 10.1038/s41598-020-60552-y
Lim QL, Tan YL, Ng WL, Yong CSY, Ismail A, Rovie-Ryan JJ, Rosli N, Annavi G.A molecular sexing method by polymerase chain reaction (PCR) amplification of a portion of the sex-determining region Y (SRY) and the zinc finger (ZF) gene, as well as six equine Y-chromosome-specific microsatellite markers, were tested in the Malayan tapir (Tapirus indicus). While the microsatellite markers did not yield any male-specific amplicons for sex-typing, the SRY/ZF marker system produced reliable molecular sexing results by accurately sex-typing 31 reference Malayan tapirs, using whole blood, dried blood spot (DBS), or tissue samples as materials for DNA extraction. The marker syste...
Energy metabolism of the equine cumulus oocyte complex during in vitro maturation.
Scientific reports    February 26, 2020   Volume 10, Issue 1 3493 doi: 10.1038/s41598-020-60624-z
Lewis N, Hinrichs K, Leese HJ, McG Argo C, Brison DR, Sturmey R.Horses are one of the few species, beside humans, in which assisted reproductive technology has important clinical applications. Furthermore, the horse can serve as a valuable model for the study of comparative reproductive biology. Here we present the first comprehensive characterisation of energy metabolism and mitochondrial efficiency in equine cumulus-oocyte complexes (COCs) during in vitro maturation (IVM), as determined using a combination of non-invasive consumption and release assays and mitochondrial function analysis. These data reveal notable species-specific differences in the rate...
Measuring the evolution of facial ‘expression’ using multi-species FACS.
Neuroscience and biobehavioral reviews    February 24, 2020   Volume 113 1-11 doi: 10.1016/j.neubiorev.2020.02.031
Waller BM, Julle-Daniere E, Micheletta J.Darwin observed that form, and in his view, meaning, of facial behaviour (observable changes in the appearance of the face, often termed facial 'expression') is similar between a wide range of species and concluded that this must be due to a shared ancestral origin. Yet, as with all social behaviours, exactly how to define similarity and determine homology is debated. Facial behaviour is linked to specific facial muscle movements, so one important factor in determining homology is the anatomical basis of facial behaviours that appear similar in both appearance and social function. The Facial A...
Monitoring Acute Pain in Donkeys with the Equine Utrecht University Scale for Donkeys Composite Pain Assessment (EQUUS-DONKEY-COMPASS) and the Equine Utrecht University Scale for Donkey Facial Assessment of Pain (EQUUS-DONKEY-FAP).
Animals : an open access journal from MDPI    February 22, 2020   Volume 10, Issue 2 354 doi: 10.3390/ani10020354
van Dierendonck MC, Burden FA, Rickards K, van Loon JPAM.Objective pain assessment in donkeys is of vital importance for improving welfare in a species that is considered stoic. This study presents the construction and testing of two pain scales, the Equine Utrecht University Scale for Donkey Composite Pain Assessment (EQUUS-DONKEY-COMPASS) and the Equine Utrecht University Scale for Donkey Facial Assessment of Pain (EQUUS-DONKEY-FAP), in donkeys with acute pain. A cohort follow-up study using 264 adult donkeys ( = 12 acute colic, = 25 acute orthopaedic pain, = 18 acute head-related pain, = 24 postoperative pain, and = 185 controls) was performe...
Prediction of the onset of parturition in horses and cattle.
Theriogenology    February 19, 2020   Volume 150 308-312 doi: 10.1016/j.theriogenology.2020.01.072
Nagel C, Aurich J, Aurich C.Economic losses due to dystocia or neonatal death as well as animal welfare and ethical concerns demand a reliable prediction of parturition with the aim to improve survival of the dam and her offspring. In this review, estimation of gestational age by ultrasound and prediction of parturition based on clinical signs, behaviour changes and changes in body temperature, composition of mammary gland secretions as well as hormonal changes are discussed in comparison between horses and cattle. Based on the physiological changes associated with the end of gestation and onset of labor, several systems...
Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum.
Mycologia    February 14, 2020   Volume 112, Issue 6 1212-1239 doi: 10.1080/00275514.2019.1696619
Hanafy RA, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Dagar SS, Griffith GW, Elshahed MS, Youssef NH.We isolated and characterized 65 anaerobic gut fungal (AGF; Neocallimastigomycota) strains from fecal samples of five wild (W, axis deer, white-tailed deer, Boer goat, mouflon, and Nilgiri tahr), one zoo-housed (Z, zebra), and three domesticated (D,  horse, sheep, and goat) herbivores in the US states of Texas (TX) and Oklahoma (OK), Wales (WA), and the Indian states of Kerala (KE) and Haryana (HA). Phylogenetic assessment using the D1-D2 regions of the large subunit (28S) rDNA and internal transcribed spacer 1 (ITS1) identified seven monophyletic clades that are distinct from all curren...
Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species.
Animal microbiome    February 12, 2020   Volume 2, Issue 1 6 doi: 10.1186/s42523-020-0023-1
Edwards JE, Shetty SA, van den Berg P, Burden F, van Doorn DA, Pellikaan WF, Dijkstra J, Smidt H.Equine gut microbiology studies to date have primarily focused on horses and ponies, which represent only one of the eight extant equine species. This is despite asses and mules comprising almost half of the world's domesticated equines, and donkeys being superior to horses/ponies in their ability to degrade dietary fiber. Limited attention has also been given to commensal anaerobic fungi and archaea even though anaerobic fungi are potent fiber degrading organisms, the activity of which is enhanced by methanogenic archaea. Therefore, the objective of this study was to broaden the current knowl...
Evidence of five digits in embryonic horses and developmental stabilization of tetrapod digit number.
Proceedings. Biological sciences    February 5, 2020   Volume 287, Issue 1920 20192756 doi: 10.1098/rspb.2019.2756
Kavanagh KD, Bailey CS, Sears KE.Previous work comparing the developmental mechanisms involved in digit reduction in horses with other mammals reported that horses have only a 'single digit', with two flanking metapodials identified as remnants of digit II and IV. Here we show that early embryos go through a stage with five digit condensations, and that the flanking splint metapodials result from fusions of the two anterior digits I and II and the two posterior digits IV and V, in a striking parallel between ontogeny and phylogeny. Given that even this most extreme case of digit reduction exhibits primary pentadactyly, we re...
Histologic Comparison of the Dura Mater among Species.
Comparative medicine    February 3, 2020   Volume 70, Issue 2 170-175 doi: 10.30802/AALAS-CM-19-000022
Kinaci A, Bergmann W, Bleys RL, van der Zwan A, van Doormaal TP.The biocompatibility, biodegradation, feasibility, and efficacy of medical devices like dural sealants and substitutes are often evaluated in various animal models. However, none of these studies explain the rationale for choosing a particular species, and a systematic interspecies comparison of the dura is not available. We hypothesized that histologic characteristics of the dura would differ among species. We systematically investigated basic characteristics of the dura, including thickness, composition, and fibroblast orientation of the dura mater, in 34 samples representing 10 animal speci...
ASlive: a database for alternative splicing atlas in livestock animals.
BMC genomics    January 30, 2020   Volume 21, Issue 1 97 doi: 10.1186/s12864-020-6472-9
Liu J, Tan S, Huang S, Huang W.Alternative splicing is an important biological process whose precision must be tightly regulated during growth and development. Although there are species, disease (e.g. cancers), or study specific databases available in many organisms, no database exists in livestock animals specifically tailored for alternative splicing. Methods: We present in this study the development and implementation of a database for alternative splicing atlas in livestock animals (ASlive.org). Using publicly available RNASeq data sets across many tissues, cell types, and biological conditions totaling 28.6 T bases,...
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