Analyze Diet

Transboundary and emerging diseases.

Periodical
Veterinary Medicine
Animal Diseases
Communicable Diseases
Emerging
Disease Outbreaks
Publisher:
Blackwell Verlag
Frequency: Six no. a year, 2010-
Country: Germany
Language: English
Start Year:2008 -
ISSN:
1865-1674 (Print)
1865-1682 (Electronic)
1865-1674 (Linking)
Impact Factor
4.521
2022
NLM ID:101319538
(OCoLC):225470282
LCCN:2008243417
Classification:W1 ZE799B
Novel Streptococcus equi strains causing strangles outbreaks in Arabian horses in Egypt.
Transboundary and emerging diseases    May 10, 2020   Volume 67, Issue 6 2455-2466 doi: 10.1111/tbed.13584
Tartor YH, El-Naenaeey EY, Gharieb NM, Ali WS, Ammar AM.Strangles displays a major challenge to veterinary medicine worldwide. However, no data on Streptococcus equi subsp. equi (S. equi) M protein alleles have been reported so far from Arabian horses. We report here for the first time the S. equi SeM alleles causing strangles in Arabian horses, and the associated risk factors for the disease. Duplicate samples from one hundred Arabian horses with acute strangles in confirmed outbreaks and sporadic cases were analysed by phenotypic methods and multiplex polymerase chain reaction (PCR) targeting streptokinase precursor, seeI and sodA genes. PCR and ...
Post-outbreak African horse sickness surveillance: A scenario tree evaluation in South Africa’s controlled area.
Transboundary and emerging diseases    April 21, 2020   Volume 67, Issue 5 2146-2162 doi: 10.1111/tbed.13566
Grewar JD, Porphyre T, Sergeant ES, Theresa Weyer C, Thompson PN.An African horse sickness (AHS) outbreak occurred in March and April 2016 in the controlled area of South Africa. This extended an existing trade suspension of live equids from South Africa to the European Union. In the post-outbreak period ongoing passive and active surveillance, the latter in the form of monthly sentinel surveillance and a stand-alone freedom from disease survey in March 2017, took place. We describe a stochastic scenario tree analysis of these surveillance components for 24 months, starting July 2016, in three distinct geographic areas of the controlled area. Given that AH...
Borna disease outbreak with high mortality in an alpaca herd in a previously unreported endemic area in Germany.
Transboundary and emerging diseases    March 29, 2020   doi: 10.1111/tbed.13556
Schulze V, Große R, Fürstenau J, Forth LF, Ebinger A, Richter MT, Tappe D, Mertsch T, Klose K, Schlottau K, Hoffmann B, Höper D, Mundhenk L....Borna disease virus 1 (BoDV-1) is the causative agent of Borna disease, an often fatal neurologic condition of domestic mammals, including New World camelids, in endemic areas in Central Europe. Recently, BoDV-1 gained further attention by the confirmation of fatal zoonotic infections in humans. Although Borna disease and BoDV-1 have been described already over the past decades, comprehensive reports of Borna disease outbreaks in domestic animals employing state-of-the-art diagnostic methods are missing. Here, we report a series of BoDV-1 infections in a herd of 27 alpacas (Vicugna pacos) in t...
Identification of animal hosts of Fort Sherman virus, a New World zoonotic orthobunyavirus.
Transboundary and emerging diseases    February 16, 2020   Volume 67, Issue 4 1433-1441 doi: 10.1111/tbed.13499
de Oliveira Filho EF, Carneiro IO, Ribas JRL, Fischer C, Marklewitz M, Junglen S, Netto EM, Franke CR, Drexler JF.An orthobunyavirus termed Fort Sherman virus (FSV) was isolated in 1985 from a febrile US soldier in Panama, yet potential animal reservoirs remained unknown. We investigated sera from 192 clinically healthy peri-domestic animals sampled in northeastern Brazil during 2014-2018 by broadly reactive RT-PCR for orthobunyavirus RNA, including 50 cattle, 57 sheep, 35 goats and 50 horses. One horse sampled in 2018 was positive (0.5%; 95% CI, 0.01-3.2) at 6.2 × 103 viral RNA copies/mL. Genomic comparisons following virus isolation in Vero cells and deep sequencing revealed high identity of translat...
Serological surveillance and clinical investigation of glanders among indigenous equines in India from 2015 to 2018.
Transboundary and emerging diseases    January 28, 2020   Volume 67, Issue 3 1336-1348 doi: 10.1111/tbed.13475
Singha H, Shanmugasundaram K, Tripathi BN, Saini S, Khurana SK, Kanani A, Shah N, Mital A, Kanwar P, Bhatt L, Limaye V, Khasa V, Arora R, Gupta S....Equine glanders is an infectious and notifiable bacterial disease caused by Burkholderia mallei. The disease has been reported in South American, African and Asian countries including India. Here, we present the outcome of glanders serosurveillance carried out between January 2015 and December 2018 to know the status of equine glanders among different states in India. A total of 102,071 equid sera from 299 districts of twenty-one states and one union territory were tested for glanders. Samples were screened with Hcp1 indirect ELISA followed by confirmatory diagnosis by CFT. During this four-ye...
An emerging equine parvovirus circulates in thoroughbred horses in north Xinjiang, China, 2018.
Transboundary and emerging diseases    January 28, 2020   Volume 67, Issue 3 1052-1056 doi: 10.1111/tbed.13443
Xie J, Tong P, Zhang A, Song X, Zhang L, Shaya N, Kuang L.In 2015, a novel equine parvovirus, equine parvovirus-cerebrospinal fluid (EqPV-CSF), was identified from cerebrospinal fluid of a horse with neurological signs and lymphocytosis in USA. In our study, an EqPV-CSF-like virus was detected from 15 serum samples of 65 imported thoroughbred horses during custom quarantine in north Xinjiang province, China. Further field investigation in several major horse-producing areas in Xinjiang using specific PCR showed that this virus was detected mainly in thoroughbred horses (39/154 positive) previously imported, not in local breeds (0/127 positive). Phylo...
Analysis of Theileria equi diversity in The Gambia using a novel genotyping method.
Transboundary and emerging diseases    December 29, 2019   Volume 67, Issue 3 1213-1221 doi: 10.1111/tbed.13454
Coultous RM, McDonald M, Raftery AG, Shiels BR, Sutton DGM, Weir W.Theileria equi, one of the primary pathogens causing equine piroplasmosis, has previously been sub-classified into a number of clades on the basis of 18S SSU rRNA gene sequence diversity. This partitioning of the parasite population has potential implications for host immunity, treatment and vaccine development. To detect and identify different clade genotypes among and within individual equine blood samples, a novel PCR-based technique was designed and optimized. Theileria equi has only recently been described in The Gambia, and the developed genotyping technique was used to analyse blood sam...
Emergence of West Nile virus lineage 2 in Europe: Characteristics of the first seven cases of West Nile neuroinvasive disease in horses in Austria.
Transboundary and emerging diseases    December 24, 2019   Volume 67, Issue 3 1189-1197 doi: 10.1111/tbed.13452
de Heus P, Kolodziejek J, Camp JV, Dimmel K, Bagó Z, Hubálek Z, van den Hoven R, Cavalleri JV, Nowotny N.We report details of the first seven equine cases of confirmed West Nile neuroinvasive disease in Austria. The cases presented during summer and autumn of 2016 (n = 2), 2017 (n = 3) and 2018 (n = 2). All horses showed gait abnormalities and 6 of 7 horses exhibited fasciculations and/or tremors, and we provide video recordings of these. Three horses also showed cranial nerve involvement. Following rapid improvement, three horses were discharged. Four horses were euthanized due to the severity of clinical signs and subjected to neuropathological examination. West Nile virus (WNV) lineage 2...
Molecular characterization of equine infectious anaemia virus strains detected in England in 2010 and 2012.
Transboundary and emerging diseases    August 7, 2019   Volume 66, Issue 6 2311-2317 doi: 10.1111/tbed.13286
Dorey-Robinson DLW, Locker N, Steinbach F, Choudhury B.Equine infectious anaemia virus (EIAV) is a retrovirus with worldwide distribution which is notifiable to the OIE. Despite its importance to the equine industry, most information regarding its biology have been obtained using only two strains (EIAV and EIAV ) from the USA and China, respectively. Recently full genome sequences from Ireland, Italy and Japan have been published; however, this is still not representative of the number of EIAV outbreaks experienced globally each year. The limited availability of published sequences makes design of a universal EIAV PCR difficult, hence diagnosis is...
Factors associated with the prevalence of antibodies against Theileria equi in equids of Western Pará, Brazil.
Transboundary and emerging diseases    July 8, 2019   Volume 67 Suppl 2 100-105 doi: 10.1111/tbed.13268
Minervino AHH, Torres AC, Moreira TR, Vinholte BP, Sampaio BM, Bianchi D, Portela JM, Sarturi C, Marcili A, Barrêto Júnior RA, Gennari SM....The State of Pará has one of the largest herds of equids (horse, donkey and mule) in Brazil, most of these animals are found on cattle farms. Equine theileriosis is a tick-borne disease caused by the parasite Theileria equi and is characterized by fever, anaemia, icterus, intravascular haemolysis, haemoglobinuria, spleen and hepatomegaly, and even death. The present study aimed to determine the prevalence of antibodies against T. equi in equids in the western region of the State of Pará, Brazil, and to identify potential risk factors associated with parasite infection. A cross-sectional stu...
Establishing post-outbreak freedom from African horse sickness virus in South Africa’s surveillance zone.
Transboundary and emerging diseases    July 7, 2019   Volume 66, Issue 6 2288-2296 doi: 10.1111/tbed.13279
Grewar JD, Sergeant ES, Weyer CT, van Helden LS, Parker BJ, Anthony T, Thompson PN.An African horse sickness (AHS) outbreak occurred in South Africa's AHS controlled area in autumn 2016. A freedom from disease survey was performed to establish the likelihood of ongoing circulation of the associated virus during the same period the following year. A single-stage surveillance strategy was employed with a population-level design prevalence of 1% to establish a survey population sensitivity of 95% (probability that one or more positive horses would be detected if AHS was present at a prevalence greater than or equal to the design prevalence). In March 2017, a total of 262 random...
Isolation and characterization of equine influenza virus (H3N8) from an equine influenza outbreak in Malaysia in 2015.
Transboundary and emerging diseases    May 22, 2019   Volume 66, Issue 5 1884-1893 doi: 10.1111/tbed.13218
Toh X, Soh ML, Ng MK, Yap SC, Harith N, Fernandez CJ, Huangfu T.Equine influenza is a major cause of respiratory infections in horses and can spread rapidly despite the availability of commercial vaccines. In this study, we carried out molecular characterization of Equine Influenza Virus (EIV) isolated from the Malaysian outbreak in 2015 by sequencing of the HA and NA gene segments using Sanger sequencing. The nucleotide and amino acid sequences of HA and NA were compared with representative Florida clade 1 and clade 2 strains using phylogenetic analysis. The Florida clade 1 viruses identified in this outbreak revealed numerous amino acid substitutions in ...
First description of Theiler’s disease-associated virus infection and epidemiological investigation of equine pegivirus and equine hepacivirus coinfection in Brazil.
Transboundary and emerging diseases    May 8, 2019   Volume 66, Issue 4 1737-1751 doi: 10.1111/tbed.13210
Figueiredo AS, de Moraes MVDS, Soares CC, Chalhoub FLL, de Filippis AMB, Dos Santos DRL, de Almeida FQ, Godoi TLOS, de Souza AM, Burdman TR....Recent advances in the study of equine pegivirus (EPgV), Theiler's disease-associated virus (TDAV) and equine hepacivirus (EqHV) highlight their importance to veterinary and human health. To gain some insight into virus distribution, possible risk factors, presence of liver damage and genetic variability of these viruses in Brazil, we performed a cross-sectional study of EPgV and TDAV infections using a simultaneous detection assay, and assessed EqHV coinfection in different horse cohorts. Of the 500 serum samples screened, TDAV, EPgV and EPgV-EqHV were present in 1.6%, 14.2% and 18.3%, respec...
Specific detection and differentiation of tick-borne encephalitis and West Nile virus induced IgG antibodies in humans and horses.
Transboundary and emerging diseases    April 29, 2019   Volume 66, Issue 4 1701-1708 doi: 10.1111/tbed.13205
Rockstroh A, Moges B, Berneck BS, Sattler T, Revilla-Fernández S, Schmoll F, Pacenti M, Sinigaglia A, Barzon L, Schmidt-Chanasit J, Nowotny N....Tick-borne encephalitis virus (TBEV) and West Nile virus (WNV) are important arthropod-borne zoonotic flaviviruses. Due to the emergence of WNV in TBEV-endemic regions co-circulation of both viruses is increasing. Flaviviruses are structurally highly similar, which leads to cross-reacting antibodies upon infection. Currently available serological assays for TBEV and WNV infections are therefore compromised by false-positive results, especially in IgG measurements. In order to discriminate both infections novel diagnostic methods are needed. We describe an ELISA to measure IgG antibodies specif...
Utility of examining fallen stock data to monitor health-related events in equids: Application to an outbreak of West Nile Virus in France in 2015.
Transboundary and emerging diseases    March 6, 2019   Volume 66, Issue 3 1417-1419 doi: 10.1111/tbed.13150
Cazeau G, Leblond A, Sala C, Froustey M, Beck C, Lecollinet S, Tapprest J.Few studies about the use of quantitative equine mortality data for monitoring purposes are available. Our study evaluated the utility of monitoring emerging equine diseases using mortality data collected by rendering plants. We used approaches involving modelling of historical mortality fluctuations and detection algorithm methods to analyse changes in equine mortality in connection with the West Nile Virus (WNV) outbreak that occurred between July and September 2015 along the Mediterranean coast of France. Two weeks after the first equine WNV case was detected by clinical surveillance, detec...
Development of a rapid and sensitive recombinase polymerase amplification-lateral flow assay for detection of Burkholderia mallei.
Transboundary and emerging diseases    February 15, 2019   Volume 66, Issue 2 1016-1022 doi: 10.1111/tbed.13126
Saxena A, Pal V, Tripathi NK, Goel AK.Burkholderia mallei, a potential biothreat agent is the aetiological agent of glanders, a zoonotic disease primarily affecting equines. B. mallei shares close genetic proximity with B. pseudomallei, the aetiological agent of melioidosis. Hence, molecular detection of B. mallei and its differentiation from B. pseudomallei has always been challenging. Early diagnosis of glanders is critical for timely treatment in humans and disease containment in animals. In this study a recombinase polymerase amplification-lateral flow (RPA-LF) assay has been developed for early and accurate detection of B. ma...
Serological evidence of H3N2 canine influenza virus infection among horses with dog exposure.
Transboundary and emerging diseases    January 11, 2019   Volume 66, Issue 2 915-920 doi: 10.1111/tbed.13104
Zhou P, Luo A, Xiao X, Hu X, Shen D, Li J, Wu X, Xian X, Wei C, Fu C, Zhang G, Sun L, Li S.Currently, Canine influenza virus (CIV) H3N2 is continuously circulating in dog populations in China, Korea, and the United States (US). Both influenza SA-α-2,3-Gal and SA-α-2,6-Gal receptors have been observed in the respiratory tracts of both horses and dogs. Hence, the increasing number of CIV H3N2 cases in the world indicates a potential risk for transspecies transmission to horses with dog exposure. Here, a seroepidemiological survey of CIV H3N2 infections in horses was conducted using hemagglutination inhibition (HI), microneutralization (MN) and the chicken embryo neutralization test ...
Burkholderia mallei: The dynamics of networks and disease transmission.
Transboundary and emerging diseases    December 4, 2018   Volume 66, Issue 2 715-728 doi: 10.1111/tbed.13071
Cárdenas NC, Galvis JOA, Farinati AA, Grisi-Filho JHH, Diehl GN, Machado G.Glanders is a highly infectious zoonotic disease caused by Burkholderia mallei. The transmission of B. mallei occurs mainly by direct contact, and horses are the natural reservoir. Therefore, the identification of infection sources within horse populations and animal movements is critical to enhance disease control. Here, we analysed the dynamics of horse movements from 2014 to 2016 using network analysis in order to understand the flow of animals in two hierarchical levels, municipalities and farms. The municipality-level network was used to investigate both community clustering and the bala...
West Nile virus associated with equid encephalitis in Brazil, 2018.
Transboundary and emerging diseases    November 2, 2018   Volume 66, Issue 1 445-453 doi: 10.1111/tbed.13043
Silva ASG, Matos ACD, da Cunha MACR, Rehfeld IS, Galinari GCF, Marcelino SAC, Saraiva LHG, Martins NRDS, Maranhão RPA, Lobato ZIP, Pierezan F....Mosquito-borne arboviruses are a major public health concern worldwide and are responsible for emerging and re-emerging diseases. Taken together, the arboviruses have a strong impact on public health and are the most common causes of equine encephalitis. In-depth diagnostic investigation of equine viral encephalitis is of utmost importance for the epidemiological surveillance and control of this disease. Regarding neurological disorders in equids, in April-May 2018, at least 12 cases of equid mortality with acute neurological signs were reported in six farms from Espirito Santo state, Brazil. ...
Assessment of reproducibility of a VP7 Blocking ELISA diagnostic test for African horse sickness.
Transboundary and emerging diseases    August 2, 2018   Volume 66, Issue 1 83-90 doi: 10.1111/tbed.12968
Durán-Ferrer M, Agüero M, Zientara S, Beck C, Lecollinet S, Sailleau C, Smith S, Potgieter C, Rueda P, Sastre P, Monaco F, Villalba R....The laboratory diagnosis of African horse sickness (AHS) is important for: (a) demonstrating freedom from infection in a population, animals or products for trade (b) assessing the efficiency of eradication policies; (c) laboratory confirmation of clinical diagnosis; (d) estimating the prevalence of AHS infection; and (e) assessing postvaccination immune status of individual animals or populations. Although serological techniques play a secondary role in the confirmation of clinical cases, their use is very important for all the other purposes due to their high throughput, ease of use and good...
Hepatitis E virus infection in equines in Spain.
Transboundary and emerging diseases    July 26, 2018   Volume 66, Issue 1 66-71 doi: 10.1111/tbed.12962
García-Bocanegra I, Rivero A, Caballero-Gómez J, López-López P, Cano-Terriza D, Frías M, Jiménez-Ruiz S, Risalde MA, Gómez-Villamandos JC....Hepatitis E (HE) is an important emerging disease in European countries. To analyse the role of equids as potential reservoirs for HE virus (HEV), we determined the prevalence of HEV infection in 861 equines from 464 herds in Spain. HEV RNA in serum was detected in 0.4% (3/692) of horses, 1.2% (1/86) of donkeys and 3.6% (3/83) of mules. Phylogenetic analysis identified the zoonotic genotype 3 as being closely related to viral human and swine strains. In this first report on HEV in equids in Europe, we confirm the susceptibility of horses, donkeys and mules to HEV infection. The low prevalence ...
Potential distribution of Pythium insidiosum in Rio Grande do Sul, Brazil, and projections to neighbour countries.
Transboundary and emerging diseases    June 19, 2018   Volume 65, Issue 6 1671-1679 doi: 10.1111/tbed.12925
Machado G, Weiblen C, Escobar LE.Pythium insidiosum is a widespread pathogen that causes pythiosis, a disease with severe health consequences in horses and humans worldwide. Latin America hosts one of the largest, but scattered, horse herds, making it critical to identify areas at high risk of pythiosis transmission to help guide surveillance in areas with disease transmission risk. We utilized ecological niche modelling and epidemiological data to reconstruct the ecological conditions for pathogen circulation to identify areas with potential risk of pythiosis in Brazil and Uruguay. We surveyed 338 horse farm locations in sou...
Genetic diversity of equine herpesvirus 1 isolated from neurological, abortigenic and respiratory disease outbreaks.
Transboundary and emerging diseases    February 9, 2018   Volume 65, Issue 3 817-832 doi: 10.1111/tbed.12809
Bryant NA, Wilkie GS, Russell CA, Compston L, Grafham D, Clissold L, McLay K, Medcalf L, Newton R, Davison AJ, Elton DM.Equine herpesvirus 1 (EHV-1) causes respiratory disease, abortion, neonatal death and neurological disease in equines and is endemic in most countries. The viral factors that influence EHV-1 disease severity are poorly understood, and this has hampered vaccine development. However, the N752D substitution in the viral DNA polymerase catalytic subunit has been shown statistically to be associated with neurological disease. This has given rise to the term "neuropathic strain," even though strains lacking the polymorphism have been recovered from cases of neurological disease. To broaden understan...
Molecular evidence to suggest pigeon-type Chlamydia psittaci in association with an equine foal loss.
Transboundary and emerging diseases    January 19, 2018   Volume 65, Issue 3 911-915 doi: 10.1111/tbed.12817
Jelocnik M, Jenkins C, O'Rourke B, Barnwell J, Polkinghorne A.Chlamydia psittaci is an important avian pathogen with spillover from infected wild and domesticated birds also posing a risk to human health. We recently reported a case of C. psittaci equine placentitis associated with further spillover to humans. Molecular typing of this case revealed it belonged to the 6BC clade of C. psittaci, a globally distributed highly virulent set of strains, typically linked to infection spillover from parrots. Equine chlamydiosis associated with C. psittaci infection has previously been reported elsewhere in countries where parrots are not endemic, however, rais...
Epidemiology and spatio-temporal analysis of West Nile virus in horses in Spain between 2010 and 2016.
Transboundary and emerging diseases    October 16, 2017   Volume 65, Issue 2 567-577 doi: 10.1111/tbed.12742
García-Bocanegra I, Belkhiria J, Napp S, Cano-Terriza D, Jiménez-Ruiz S, Martínez-López B.During the last decade, West Nile virus (WNV) outbreaks have increased sharply in both horses and human in Europe. The aims of this study were to evaluate characteristics and spatio-temporal distribution of WNV outbreaks in horses in Spain between 2010 and 2016 in order to identify the environmental variables most associated with WNV occurrence and to generate high-resolution WNV suitability maps to inform risk-based surveillance strategies in this country. Between August 2010 and November 2016, a total of 403 WNV suspected cases were investigated, of which, 177 (43.9%) were laboratory confirm...
Identification of a divergent genotype of equine arteritis virus from South American donkeys.
Transboundary and emerging diseases    September 17, 2017   Volume 64, Issue 6 1655-1660 doi: 10.1111/tbed.12703
Rivas J, Neira V, Mena J, Brito B, Garcia A, Gutierrez C, Sandoval D, Ortega R.A novel equine arteritis virus (EAV) was isolated and sequenced from feral donkeys in Chile. Phylogenetic analysis indicates that the new virus and South African asinine strains diverged at least 100 years from equine EAV strains. The results indicate that asinine strains belonged to a different EAV genotype.
Equine hepacivirus persistent infection in a horse with chronic wasting.
Transboundary and emerging diseases    July 14, 2017   Volume 64, Issue 5 1354-1358 doi: 10.1111/tbed.12679
Elia G, Lanave G, Lorusso E, Parisi A, Trotta A, Buono R, Martella V, Decaro N, Buonavoglia C.Equine hepacivirus is the closest homologue of hepatitis C virus. Limited data on the clinical features of this infection are available. We report the identification of a horse with high-titre viremia by equine hepacivirus. Over a 15-month follow-up, the clinical signs and the viremic status persisted, suggesting a chronic evolution.
Molecular characterization of equine infectious anaemia virus from a major outbreak in southeastern France.
Transboundary and emerging diseases    May 15, 2017   Volume 65, Issue 1 e7-e13 doi: 10.1111/tbed.12657
Gaudaire D, Lecouturier F, Ponçon N, Morilland E, Laugier C, Zientara S, Hans A.In 2009, a major outbreak of equine infectious anaemia (EIA) was reported in the south-east of France. This outbreak affected three premises located in the Var region where the index case, a 10-year-old mare that exhibited clinical signs consistent with EIA, occurred at a riding school. Overall, more than 250 horses were tested for EIAV (equine infectious anaemia virus) antibodies, using agar gel immunodiffusion test, and 16 horses were positive in three different holdings. Epidemiological survey confirmed that the three premises were related through the purchase/sale of horses and the use of ...
Evidence of African horse sickness virus infection of Equus zebra hartmannae in the south-western Khomas Region, Namibia.
Transboundary and emerging diseases    April 12, 2017   Volume 65, Issue 1 278-280 doi: 10.1111/tbed.12651
Becker E, Venter GJ, Greyling T, Molini U, van Hamburg H.Equine mortalities suspected to be due to African horse sickness (AHS) were reported from the arid Khomas Region, Namibia, in 2008. The area was previously considered a localized AHS-free area. Hartmann's mountain zebra (Equus zebra hartmannae), a potential but unconfirmed reservoir host of African horse sickness virus (AHSV), occurs in the region. Between 2009 and 2010 serum, blood and tissue samples from 31 culled E. z. hartmannae were analysed by reverse transcription-polymerase chain reaction (RT-PCR) (n = 31) and enzyme-linked immunosorbent assay (ELISA) (n = 18) to determine the p...
Deep sequencing and variant analysis of an Italian pathogenic field strain of equine infectious anaemia virus.
Transboundary and emerging diseases    March 15, 2017   Volume 64, Issue 6 2104-2112 doi: 10.1111/tbed.12631
Cappelli K, Cook RF, Stefanetti V, Passamonti F, Autorino GL, Scicluna MT, Coletti M, Verini Supplizi A, Capomaccio S.Equine infectious anaemia virus (EIAV) is a lentivirus with an almost worldwide distribution that causes persistent infections in equids. Technical limitations have restricted genetic analysis of EIAV field isolates predominantly to gag sequences resulting in very little published information concerning the extent of inter-strain variation in pol, env and the three ancillary open reading frames (ORFs). Here, we describe the use of long-range PCR in conjunction with next-generation sequencing (NGS) for rapid molecular characterization of all viral ORFs and known transcription factor binding mot...