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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Peter Rossdale’s scientific contribution to equine perinatology.
Equine veterinary journal. Supplement    May 19, 2012   Issue 41 1-2 doi: 10.1111/j.2042-3306.2011.00521.x
Ousey JC, Fowden AL.No abstract available
Endocrine adaptations in the foal over the perinatal period.
Equine veterinary journal. Supplement    May 19, 2012   Issue 41 130-139 doi: 10.1111/j.2042-3306.2011.00505.x
Fowden AL, Forhead AJ, Ousey JC.In adapting to life ex utero, the foal encounters a number of physiological challenges. It has to assume the nutritional, respiratory and excretory functions of the placenta and activate full regulatory control over its own internal environment for the first time. To achieve this, there must be structural and functional changes to a wide range of tissues including several endocrine glands. In most species, including the horse, these maturational changes begin in late gestation and continue into the first few days of neonatal life. Consequently, during this perinatal period, there are major cha...
A racing start in life? The hurdles of equine feto-placental pathology.
Equine veterinary journal. Supplement    May 19, 2012   Issue 41 120-129 doi: 10.1111/j.2042-3306.2011.00507.x
Foote AK, Ricketts SW, Whitwell KE.Significant progress has been made in understanding and monitoring the causes of equine abortion over past decades. However, not all in utero pathology results in abortion. It has long been recognised that some in utero pathology, such as twinning or chronic placentitis, can result in the birth of live but growth-retarded foals and there is historical evidence that birth weight may influence future athletic performance. Clinical experience (e.g. from twins) and experimental studies (pony-Thoroughbred embryo transfer) have highlighted the importance of reduced functional placental area in limit...
Specific detection of all members of the Venezuelan Equine Encephalitis complex: development of a RT-Nested PCR.
Journal of virological methods    May 18, 2012   Volume 186, Issue 1-2 203-206 doi: 10.1016/j.jviromet.2012.05.009
Pisano MB, Seco MP, Ré VE, Farías AA, Contigiani MS, Tenorio A.Venezuelan Equine Encephalitis (VEE) complex belongs to alphavirus genus in the family Togaviridae. Several species of this complex are pathogenic to humans. VEE infections can produce severe or mild disease, and many cases remain undiagnosed. A specific and sensitive reverse transcriptase nested polymerase chain reaction (RT-Nested PCR) method was developed for the detection of all VEE subtypes, including Rio Negro Virus (RNV) (subtype VI), which circulates only in Argentina. Degenerated primers were designed and thermal cycling parameters were standardized. This technique is suitable for rap...
A genome-wide association study reveals loci influencing height and other conformation traits in horses.
PloS one    May 16, 2012   Volume 7, Issue 5 e37282 doi: 10.1371/journal.pone.0037282
Signer-Hasler H, Flury C, Haase B, Burger D, Simianer H, Leeb T, Rieder S.The molecular analysis of genes influencing human height has been notoriously difficult. Genome-wide association studies (GWAS) for height in humans based on tens of thousands to hundreds of thousands of samples so far revealed ∼200 loci for human height explaining only 20% of the heritability. In domestic animals isolated populations with a greatly reduced genetic heterogeneity facilitate a more efficient analysis of complex traits. We performed a genome-wide association study on 1,077 Franches-Montagnes (FM) horses using ∼40,000 SNPs. Our study revealed two QTL for height at withers on c...
Intestinal ciliate composition found in the feces of racing horses from Izmir, Turkey.
European journal of protistology    May 15, 2012   Volume 48, Issue 3 215-226 doi: 10.1016/j.ejop.2012.01.002
Gürelli G, Göçmen B.Species composition and distribution of intestinal ciliates were investigated in the feces from 15 racing horses living near Izmir, Turkey. Thirty-seven species belonging to 21 genera were identified. Although no new species were observed, this is the first report on intestinal ciliates in racing horses living in Turkey. The mean number of ciliates was 26.4 ± 13.9 × 10(4) cells ml(-1) of feces and the mean number of ciliate species per host was 18.8 ± 7.1. No ciliates were observed in one horse. Bundleia and Polymorphella were found to be the two dominant genera, occurring in high proportio...
Characterization of methicillin-resistant Staphylococcus aureus CC398 obtained from humans and animals on dairy farms.
Veterinary microbiology    May 15, 2012   Volume 160, Issue 1-2 77-84 doi: 10.1016/j.vetmic.2012.05.005
Fessler AT, Olde Riekerink RG, Rothkamp A, Kadlec K, Sampimon OC, Lam TJ, Schwarz S.In this study MRSA isolates from dairy farms were investigated for their genetic relationships and antimicrobial susceptibility. In total, 125 MRSA isolates from 26 dairy farms were studied, including isolates from milk samples (n=46), dairy cattle (n=24), calves (n=6), dust samples from pig (n=16) and veal calf sheds (n=1), dogs (n=2), a horse, a sheep and humans (n=28). CC398-specific PCRs, spa typing, SCCmec typing and ApaI macrorestriction analysis were conducted. Susceptibility testing was performed by broth microdilution. All 125 isolates belonged to CC398. Eight spa types (t011, t108, t...
Detection of copy number variants in the horse genome and examination of their association with recurrent laryngeal neuropathy.
Animal genetics    May 14, 2012   Volume 44, Issue 2 206-208 doi: 10.1111/j.1365-2052.2012.02373.x
Dupuis MC, Zhang Z, Durkin K, Charlier C, Lekeux P, Georges M.We used the data from a recently performed genome-wide association study using the Illumina Equine SNP50 beadchip for the detection of copy number variants (CNVs) and examined their association with recurrent laryngeal neuropathy (RLN), an important equine upper airway disease compromising performance. A total of 2797 CNVs were detected for 477 horses, covering 229 kb and seven SNPs on average. Overlapping CNVs were merged to define 478 CNV regions (CNVRs). CNVRs, particularly deletions, were shown to be significantly depleted in genes. Fifty-two of the 67 common CNVRs (frequency ≥ 1%) we...
Genome-wide association study of insect bite hypersensitivity in Dutch Shetland pony mares.
Animal genetics    May 14, 2012   Volume 44, Issue 1 44-52 doi: 10.1111/j.1365-2052.2012.02368.x
Schurink A, Ducro BJ, Bastiaansen JW, Frankena K, van Arendonk JA.Insect bite hypersensitivity (IBH) is the most common allergic disease present in horses worldwide. It has been shown that IBH is under genetic control, but the knowledge of associated genes is limited. We conducted a genome-wide association study to identify and quantify genomic regions contributing to IBH in the Dutch Shetland pony population. A total of 97 cases and 91 controls were selected and matched on withers height, coat colour and pedigree to minimise the population stratification. A blood sample was collected from participating Shetland pony mares, their IBH phenotype was scored and...
Optimal contribution selection applied to the Norwegian and the North-Swedish cold-blooded trotter – a feasibility study.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    May 12, 2012   Volume 130, Issue 3 170-177 doi: 10.1111/j.1439-0388.2012.01005.x
Olsen HF, Meuwissen T, Klemetsdal G.The aim of this study was to examine how to apply optimal contribution selection (OCS) in the Norwegian and the North-Swedish cold-blooded trotter and give practical recommendations for the future. OCS was implemented using the software Gencont with overlapping generations and selected a few, but young sires, as these turn over the generations faster and thus is less related to the mare candidates. In addition, a number of Swedish sires were selected as they were less related to the selection candidates. We concluded that implementing OCS is feasible to select sires (there is no selection on m...
CACG: a database for comparative analysis of conjoined genes.
Genomics    May 11, 2012   Volume 100, Issue 1 14-17 doi: 10.1016/j.ygeno.2012.05.005
Kim DS, Kim DW, Kim MY, Nam SH, Choi SH, Kim RN, Kang A, Kim A, Park HS.A conjoined gene is defined as one formed at the time of transcription by combining at least part of one exon from each of two or more distinct genes that lie on the same chromosome, in the same or opposite orientation, which translate independently into different proteins. We comparatively studied the extent of conjoined genes in thirteen genomes by analyzing the public databases of expressed sequence tags and mRNA sequences using a set of computational tools designed to identify conjoined genes on the same DNA strand or opposite DNA strands of the same genomic locus. The CACG database, avail...
Bioassay for follicle stimulating activity of equine gonadotropic hormone in mare serum using frozen/thawed transiently transfected reporter cells.
Theriogenology    May 11, 2012   Volume 78, Issue 4 724-730 doi: 10.1016/j.theriogenology.2012.03.015
Sahmi F, Nicola E, Price CA.The objective was to establish a cell line-based bioassay for FSH in horse serum for screening samples with high eCG bioactivity. A cell line (HEK293) was transiently cotransfected with an FSH reporter expression plasmid and a cAMP-responsive β-galactosidase reporter plasmid. Cells were bulk frozen, and thawed for assay purposes. This assay was specific for FSH, with no cross-reaction with LH or insulin-like growth factor-1. Standard curves (eCG) and serum samples from pregnant mares passed parallel line bioassay validity tests (linearity and parallelism). Estimates of bioactivity with this b...
Improving the performance of true single molecule sequencing for ancient DNA.
BMC genomics    May 10, 2012   Volume 13 177 doi: 10.1186/1471-2164-13-177
Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM....Second-generation sequencing technologies have revolutionized our ability to recover genetic information from the past, allowing the characterization of the first complete genomes from past individuals and extinct species. Recently, third generation Helicos sequencing platforms, which perform true Single-Molecule DNA Sequencing (tSMS), have shown great potential for sequencing DNA molecules from Pleistocene fossils. Here, we aim at improving even further the performance of tSMS for ancient DNA by testing two novel tSMS template preparation methods for Pleistocene bone fossils, namely oligonucl...
Evaluation of IgE levels against Culicoides nubeculosus allergens in Belgian warmblood horses.
Communications in agricultural and applied biological sciences    May 9, 2012   Volume 77, Issue 1 218-222 
Peeters LM, Janssens S, Schaffartzik A, Marti E, Buys N.No abstract available
Early detection of chronic progressive lymphoedema susceptibility in Belgian draught horse stallions by means of ELISA.
Communications in agricultural and applied biological sciences    May 9, 2012   Volume 77, Issue 1 183-187 
De Keyser K, Oosterlinck M, Raes E, Ducatelle R, Janssens S, Buys N.No abstract available
Reconstructing the origin and spread of horse domestication in the Eurasian steppe.
Proceedings of the National Academy of Sciences of the United States of America    May 7, 2012   Volume 109, Issue 21 8202-8206 doi: 10.1073/pnas.1111122109
Warmuth V, Eriksson A, Bower MA, Barker G, Barrett E, Hanks BK, Li S, Lomitashvili D, Ochir-Goryaeva M, Sizonov GV, Soyonov V, Manica A.Despite decades of research across multiple disciplines, the early history of horse domestication remains poorly understood. On the basis of current evidence from archaeology, mitochondrial DNA, and Y-chromosomal sequencing, a number of different domestication scenarios have been proposed, ranging from the spread of domestic horses out of a restricted primary area of domestication to the domestication of numerous distinct wild horse populations. In this paper, we reconstruct both the population genetic structure of the extinct wild progenitor of domestic horses, Equus ferus, and the origin and...
Expression of sweet receptor components in equine small intestine: relevance to intestinal glucose transport.
American journal of physiology. Regulatory, integrative and comparative physiology    May 2, 2012   Volume 303, Issue 2 R199-R208 doi: 10.1152/ajpregu.00031.2012
Daly K, Al-Rammahi M, Arora DK, Moran AW, Proudman CJ, Ninomiya Y, Shirazi-Beechey SP.The heteromeric sweet taste receptor T1R2-T1R3 is expressed on the luminal membrane of certain populations of enteroendocrine cells. Sensing of sugars and other sweet compounds by this receptor activates a pathway in enteroendocrine cells, resulting in secretion of a number of gut hormones, including glucagon-like peptide 2 (GLP-2). This subsequently leads to upregulation in the expression of intestinal Na(+)/glucose cotransporter, SGLT1, and increased intestinal glucose absorption. On the basis of the current information available on the horse genome sequence, it has been proposed that the ge...
Diabetes, insulin resistance, and metabolic syndrome in horses.
Journal of diabetes science and technology    May 1, 2012   Volume 6, Issue 3 534-540 doi: 10.1177/193229681200600307
Johnson PJ, Wiedmeyer CE, LaCarrubba A, Ganjam VK, Messer NT.Analogous to the situation in human medicine, contemporary practices in horse management, which incorporate lengthy periods of physical inactivity coupled with provision of nutritional rations characterized by inappropriately high sugar and starch, have led to obesity being more commonly recognized by practitioners of equine veterinary practice. In many of these cases, obesity is associated with insulin resistance (IR) and glucose intolerance. An equine metabolic syndrome (MS) has been described that is similar to the human MS in that both IR and aspects of obesity represent cornerstones of it...
Clinical, pathological, and genetic characterization of Listeria monocytogenes causing sepsis and necrotizing typhlocolitis and hepatitis in a foal. Warner SL, Boggs J, Lee JK, Reddy S, Banes M, Cooley J.Listeria monocytogenes was isolated from the blood, lungs, and liver of a 5-week-old American Quarter Horse filly that presented with a 2-day history of fever, lethargy, ataxia, and seizure activity. The foal was born on a well-managed breeding facility to a multiparous mare with no periparturient complications. At 8 hr of age, the foal had an adequate passive transfer of immunity (immunoglobulin G > 2,000 mg/dl). Since the time of birth, the foal reportedly had mild, intermittent diarrhea that responded to gastrointestinal protectants and probiotics. Despite prompt and aggressive treatment af...
Removal of seminal plasma enhances membrane stability on fresh and cooled stallion spermatozoa.
Reproduction in domestic animals = Zuchthygiene    April 24, 2012   Volume 48, Issue 1 64-71 doi: 10.1111/j.1439-0531.2012.02026.x
Barrier-Battut I, Bonnet C, Giraudo A, Dubois C, Caillaud M, Vidament M.Fertility is reduced after semen cooling for a considerable number of stallions. The main hypotheses include alterations in plasma membrane following cooling and deleterious influence of seminal plasma. However, interindividual variability is controversial. We hypothesized that the removal of seminal plasma could enhance motility in some 'poor cooler' stallions, but could also affect, negatively or positively, membrane quality in some stallions. This study examined the effect of centrifugation, followed or not by removal of seminal plasma, on parameters indicating semen quality after 48 h at 4...
ELA-DRA polymorphisms are not associated with Equine Arteritis Virus infection in horses from Argentina.
Research in veterinary science    April 23, 2012   Volume 93, Issue 3 1271-1273 doi: 10.1016/j.rvsc.2012.03.007
Kalemkerian PB, Metz GE, Peral-Garcia P, Echeverria MG, Giovambattista G, Díaz S.Polymorphisms at Major Histocompatibility Complex (MHC) genes have been associated with resistance/susceptibility to infectious diseases in domestic animals. The aim of this investigation was to evaluate whether polymorphisms of the DRA gene the Equine Lymphocyte Antigen is associated with susceptibility to Equine Arteritis Virus (EAV) infection in horses in Argentina. The equine DRA gene was screened for polymorphisms using Pyrosequencing® Technology which allowed the detection of three ELA-DRA exon 2 alleles. Neither allele frequencies nor genotypic differentiation exhibited any statistical...
Generation of equine TSLP-specific antibodies and their use for detection of TSLP produced by equine keratinocytes and leukocytes.
Veterinary immunology and immunopathology    April 20, 2012   Volume 147, Issue 3-4 180-186 doi: 10.1016/j.vetimm.2012.04.013
Janda J, Plattet P, Torsteinsdottir S, Jonsdottir S, Zurbriggen A, Marti E.Allergic horses react to innocuous environmental substances by activation of Th2 cells and production of allergen-specific IgE antibodies. The mechanisms leading to Th2 differentiation are not well understood. In humans and mice, epithelial cell-derived thymic stromal lymphopoietin (TSLP) plays a central role in this process. Little is known about equine TSLP (eqTSLP) and its role in allergic diseases and our current knowledge is limited to the assessment of TSLP mRNA expression. In order to be able to study eqTSLP at the protein level, the aim of the present study was to produce recombinant e...
Antimicrobial resistance in faecal Escherichia coli isolates from horses treated with antimicrobials: a longitudinal study in hospitalised and non-hospitalised horses.
Veterinary microbiology    April 17, 2012   Volume 159, Issue 3-4 381-389 doi: 10.1016/j.vetmic.2012.04.010
Johns I, Verheyen K, Good L, Rycroft A.The objective of this study was to examine the emergence and persistence of antimicrobial resistant faecal Escherichia coli in horses treated with antimicrobial drugs in a hospital and community setting. Faecal samples were collected from hospitalised (n=56) and non-hospitalised (n=14) horses treated with antimicrobials, and 10 non-treated hospitalised controls. Samples were obtained pre-treatment and 5 days later in all horses, and 2 weeks and 2 months after treatment in treated horses. Susceptibility to 15 antimicrobials was tested via disc diffusion on up to 3 E. coli isolates per sample. P...
Maternal lineages in native Canadian equine populations and their relationship to the Nordic and Mountain and Moorland pony breeds.
The Journal of heredity    April 13, 2012   Volume 103, Issue 3 380-390 doi: 10.1093/jhered/ess003
Prystupa JM, Hind P, Cothran EG, Plante Y.A 378-bp section of the mitochondrial displacement loop was used to estimate genetic diversity in the native Canadian equine populations. The inclusion of 10 Mountain and Moorland, 3 Nordic pony breeds, 2 feral populations, and 5 horse breeds were also investigated as they may have influenced the development (or rejuvenation) of the native Canadian populations. A total of 281 samples were sequenced, which produced 75 haplotypes derived from 54 informative sites. On further investigation, 36 of these 75 haplotypes were found to be previously unreported. Overall, total diversity was lowest in th...
Seasonal changes in luteal progesterone concentration and mRNA expressions of progesterone synthesis-related proteins in the corpus luteum of mares.
The Journal of reproduction and development    April 13, 2012   Volume 58, Issue 4 393-397 doi: 10.1262/jrd.2012-023
Kozai K, Hojo T, Takahashi M, Acosta TJ, Nambo Y, Okuda K.Although circulating progesterone (P₄) levels tend to change with the season, little is known about the seasonal changes of P₄ synthesis-related proteins in the corpus luteum (CL) of mares. To examine these changes, seventy-four ovaries containing a CL were collected from Anglo-Norman mares at a local abattoir in Kumamoto, Japan (~N32°), five times during one year. The stages of the CLs were classified as early, mid and regressed by macroscopic observation of the CL and follicles. The mid CL, which had the highest P₄ concentration, was used to evaluate the seasonal changes in P₄ synth...
New insights into sequence variation in the IGS region of 21 cyathostomin species and the implication for molecular identification.
Parasitology    April 13, 2012   Volume 139, Issue 8 1063-1073 doi: 10.1017/S0031182012000467
Cwiklinski K, Kooyman FN, Van Doorn DC, Matthews JB, Hodgkinson JE.Cyathostomins comprise a group of 50 species of parasitic nematodes that infect equids. Ribosomal DNA sequences, in particular the intergenic spacer (IGS) region, have been utilized via several methodologies to identify pre-parasitic stages of the commonest species that affect horses. These methods rely on the availability of accurate sequence information for each species, as well as detailed knowledge of the levels of intra- and inter-specific variation. Here, the IGS DNA region was amplified and sequenced from 10 cyathostomin species for which sequence was not previously available. Also, add...
Mutations in MITF and PAX3 cause “splashed white” and other white spotting phenotypes in horses.
PLoS genetics    April 12, 2012   Volume 8, Issue 4 e1002653 doi: 10.1371/journal.pgen.1002653
Hauswirth R, Haase B, Blatter M, Brooks SA, Burger D, Drögemüller C, Gerber V, Henke D, Janda J, Jude R, Magdesian KG, Matthews JM, Poncet PA....During fetal development neural-crest-derived melanoblasts migrate across the entire body surface and differentiate into melanocytes, the pigment-producing cells. Alterations in this precisely regulated process can lead to white spotting patterns. White spotting patterns in horses are a complex trait with a large phenotypic variance ranging from minimal white markings up to completely white horses. The "splashed white" pattern is primarily characterized by an extremely large blaze, often accompanied by extended white markings at the distal limbs and blue eyes. Some, but not all, splashed white...
Complete genomic sequence of an equine herpesvirus type 8 Wh strain isolated from China.
Journal of virology    April 12, 2012   Volume 86, Issue 9 5407 doi: 10.1128/JVI.00445-12
Liu C, Guo W, Lu G, Xiang W, Wang X.A new strain of equine herpesvirus type 8 (EHV-8), Wh, has been isolated from horses in China, and its complete genome has been sequenced and analyzed. The result indicates that the new strain has the same constitution and arrangement of open read frames as EHV-1 and EHV-9. This work is the first announced complete genome sequence of EHV-8.
“Science is meant to be cumulative, but many scientists are not cumulating scientifically”.
Equine veterinary journal    April 11, 2012   Volume 44, Issue 3 258 doi: 10.1111/j.2042-3306.2012.00570.x
Burton M.No abstract available
Genetic variability in local Brazilian horse lines using microsatellite markers.
Genetics and molecular research : GMR    April 10, 2012   Volume 11, Issue 2 881-890 doi: 10.4238/2012.April.10.4
Silva AC, Paiva SR, Albuquerque MS, Egito AA, Santos SA, Lima FC, Castro ST, Mariante AS, Correa PS, McManus CM.Genetic variability at 11 microsatellite markers was analyzed in five naturalized/local Brazilian horse breeds or genetic groups. Blood samples were collected from 328 animals of the breeds Campeira (Santa Catarina State), Lavradeira (Roraima State), Pantaneira (Pantanal Mato-Grossense), Mangalarga Marchador (Minas Gerais State), as well as the genetic group Baixadeiro (Maranhão State), and the exotic breeds English Thoroughbred and Arab. We found significant genetic variability within evaluated microsatellite loci, with observed heterozygosis varying between 0.426 and 0.768 and polymorphism ...