Analyze Diet

Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Horse breed discrimination using machine learning methods.
Journal of applied genetics    October 31, 2009   Volume 50, Issue 4 375-377 doi: 10.1007/BF03195696
Burocziova M, Riha J.Genetic relationships and population structure of 8 horse breeds in the Czech and Slovak Republics were investigated using classification methods for breed discrimination. To demonstrate genetic differences among these breeds, we used genetic information - genotype data of microsatellite markers and classification algorithms - to perform a probabilistic prediction of an individual's breed. In total, 932 unrelated animals were genotyped for 17 microsatellite markers recommended by the ISAG for parentage testing (AHT4, AHT5, ASB2, HMS3, HMS6, HMS7, HTG4, HTG10, VHL20, HTG6, HMS2, HTG7, ASB17, AS...
Alterations in oxidative gene expression in equine skeletal muscle following exercise and training.
Physiological genomics    October 27, 2009   Volume 40, Issue 2 83-93 doi: 10.1152/physiolgenomics.00041.2009
Eivers SS, McGivney BA, Fonseca RG, MacHugh DE, Menson K, Park SD, Rivero JL, Taylor CT, Katz LM, Hill EW.Intense selection for elite racing performance in the Thoroughbred horse (Equus caballus) has resulted in a number of adaptive physiological phenotypes relevant to exercise; however, the underlying molecular mechanisms responsible for these characteristics are not well understood. Adaptive changes in mRNA expression in equine skeletal muscle were investigated by real-time qRT-PCR for a panel of candidate exercise-response genes following a standardized incremental-step treadmill exercise test in eight untrained Thoroughbred horses. Biopsy samples were obtained from the gluteus medius before, i...
Methicillin-resistant coagulase negative staphylococci isolated from horses.
The new microbiologica    October 23, 2009   Volume 32, Issue 3 311-314 
Corrente M, D'Abramo M, Latronico F, Greco MF, Bellacicco AL, Greco G, Martella V, Buonavoglia D.A methicillin-resistant (MR) Staphylococcus epidermidis strain was isolated from a saddle horse affected by osteolysis. MR coagulase-negative staphylococci (MRCNS) were isolated from 11 of 14 (78.8%) horses housed in the same riding club. By typing of the SCCmec region, almost the strains displayed a non typeable (NT) pattern and possessed the ccr type 2. Altogether, the high prevalence of MRCNS and the detection of NT SCCmec types support the hypothesis that horses may represent a reservoir of MRCNS for humans and that equine MRCNS may act as potential source of resistance genes for other sta...
Evaluation of prolactin receptor (PRLR) as candidate gene for male fertility in Hanoverian warmblood horses.
Reproduction in domestic animals = Zuchthygiene    October 23, 2009   Volume 45, Issue 5 e124-e130 doi: 10.1111/j.1439-0531.2009.01533.x
Giesecke K, Hamann H, Sieme H, Distl O.Stallion fertility has increasing importance as the artificial insemination is employed in horses more intensely. Molecular genetic markers may be useful tools to evaluate the stallion fertility before breeding. The prolactin receptor gene (PRLR) was chosen as a candidate for stallion fertility because of its influence on testicular and accessory sex gland function. Screening the equine PRLR gene for polymorphisms in Hanoverian stallions revealed two single nucleotide polymorphisms (SNPs). Association and haplotype analyses were performed in 162 Hanoverian warmblood stallions for these intrage...
Zonal chondrocyte subpopulations reacquire zone-specific characteristics during in vitro redifferentiation.
The American journal of sports medicine    October 21, 2009   Volume 37 Suppl 1 97S-104S doi: 10.1177/0363546509350978
Schuurman W, Gawlitta D, Klein TJ, ten Hoope W, van Rijen MH, Dhert WJ, van Weeren PR, Malda J.If chondrocytes from the superficial, middle, and deep zones of articular cartilage could maintain or regain their characteristic properties during in vitro culture, it would be feasible to create constructs comprising these distinctive zones. Objective: Zone-specific characteristics of zonal cell populations will disappear during 2-dimensional expansion but will reappear after 3-dimensional redifferentiation, independent of the culture technique used (alginate beads versus pellet culture). Methods: Controlled laboratory study. Methods: Equine articular chondrocytes from the 3 zones were expan...
Cryopreservation does not affect the stem characteristics of multipotent cells isolated from equine peripheral blood.
Tissue engineering. Part C, Methods    October 21, 2009   Volume 16, Issue 4 771-781 doi: 10.1089/ten.TEC.2009.0512
Martinello T, Bronzini I, Maccatrozzo L, Iacopetti I, Sampaolesi M, Mascarello F, Patruno M.Mammalian adult stem cells show, in vitro, extensive differentiative ability and may represent a versatile tool for tissue regenerative purposes, even after long-term storage. Multipotent stem cells isolated from horse blood have been shown to possess the capacity to differentiate into diverse mesenchymal lineages although their full characterization is still at an early stage. The aim of this study was to examine the effects of cryopreservation on stemness characteristics of adult equine mesenchymal stem cells isolated from peripheral blood (ePB-MSC). Each sample of ePB-MSC was analyzed immed...
An EIAV field isolate reveals much higher levels of subtype variability than currently reported for the equine lentivirus family.
Retrovirology    October 20, 2009   Volume 6 95 doi: 10.1186/1742-4690-6-95
Craigo JK, Barnes S, Zhang B, Cook SJ, Howe L, Issel CJ, Montelaro RC.Equine infectious anemia virus (EIAV), a lentivirus that infects horses, has been utilized as an animal model for the study of HIV. Furthermore, the disease associated with the equine lentivirus poses a significant challenge to veterinary medicine around the world. As with all lentiviruses, EIAV has been shown to have a high propensity for genomic sequence and antigenic variation, especially in its envelope (Env) proteins. Recent studies have demonstrated Env variation to be a major determinant of vaccine efficacy, emphasizing the importance of defining natural variation among field isolates o...
Effects of leptin on in vitro maturation, fertilization and embryonic cleavage after ICSI and early developmental expression of leptin (Ob) and leptin receptor (ObR) proteins in the horse.
Reproductive biology and endocrinology : RB&E    October 16, 2009   Volume 7 113 doi: 10.1186/1477-7827-7-113
Lange Consiglio A, Dell'Aquila ME, Fiandanese N, Ambruosi B, Cho YS, Bosi G, Arrighi S, Lacalandra GM, Cremonesi F.The identification of the adipocyte-derived obesity gene product, leptin (Ob), and subsequently its association with reproduction in rodents and humans led to speculations that leptin may be involved in the regulation of oocyte and preimplantation embryo development. In mice and pigs, in vitro leptin addition significantly increased meiotic resumption and promoted preimplantation embryo development in a dose-dependent manner. This study was conducted to determine whether leptin supplementation during in vitro maturation (IVM) to horse oocytes could have effects on their developmental capacity ...
The molecular phylogeny of uterine serpins and its relationship to evolution of placentation.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology    October 13, 2009   Volume 24, Issue 2 526-537 doi: 10.1096/fj.09-138453
Padua MB, Kowalski AA, Cañas MY, Hansen PJ.Uterine serpins (USs), designated as SERPINA14, are expressed in the endometrium in response to progesterone. All species identified as having USs exhibit epitheliochorial placentation and are in the Ruminantia and Suidae orders of the Laurasiatheria superorder. The objective was to identify US genes in species within and outside Laurasiatheria and evaluate whether evolution of the US gene was associated with development of the epitheliochorial placenta. Through queries of nucleotide and genomic databases, known US genes were identified (caprine, bovine, porcine, water buffalo), and new US cod...
Activation of foal neutrophils at different ages by CpG oligodeoxynucleotides and Rhodococcus equi.
Cytokine    October 9, 2009   Volume 48, Issue 3 280-289 doi: 10.1016/j.cyto.2009.08.012
Liu M, Liu T, Bordin A, Nerren J, Cohen N.Toll-like receptor 9 (TLR9) activation stimulates protective immune responses against intracellular pathogens by phagocytes, including neutrophils. This study examined TLR9-mediated neutrophil activation in neonatal foals. Unmethylated CpGs, ligands for TLR9, were used to stimulate equine neutrophils, either purified or in contact with other peripheral blood leukocytes. Rhodococcus equi was used as another stimulus in parallel. TLR9 mRNA was constitutively expressed at a similar level in purified equine neutrophils across different ages from birth to adulthood, and expression was not affected ...
Structural and functional-annotation of an equine whole genome oligoarray.
BMC bioinformatics    October 8, 2009   Volume 10 Suppl 11, Issue Suppl 11 S8 doi: 10.1186/1471-2105-10-S11-S8
Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.The horse genome is sequenced, allowing equine researchers to use high-throughput functional genomics platforms such as microarrays; next-generation sequencing for gene expression and proteomics. However, for researchers to derive value from these functional genomics datasets, they must be able to model this data in biologically relevant ways; to do so requires that the equine genome be more fully annotated. There are two interrelated types of genomic annotation: structural and functional. Structural annotation is delineating and demarcating the genomic elements (such as genes, promoters, and ...
A glycogen synthase 1 mutation associated with equine polysaccharide storage myopathy and exertional rhabdomyolysis occurs in a variety of UK breeds.
Equine veterinary journal    October 7, 2009   Volume 41, Issue 6 597-601 doi: 10.2746/042516409x407611
Stanley RL, McCue ME, Valberg SJ, Mickelson JR, Mayhew IG, McGowan C, Hahn CN, Patterson-Kane JC, Piercy RJ.A glycogen synthase (GYS1) mutation has been described in horses with histopathological evidence of polysaccharide storage myopathy (PSSM) in the USA. It is unknown whether the same mutation is present in horses from the UK. Objective: To determine whether the GYS1 mutation occurs in UK horses with histopathological evidence of PSSM and exertional rhabdomyolysis. Objective: The R309H GYS1 mutation is present in a variety of UK horse breeds and that the mutation is commonly associated with exertional rhabdomyolysis. Methods: DNA was extracted from 47 muscle or blood samples from UK horses with ...
A zoonotic genotype of Enterocytozoon bieneusi in horses.
The Journal of parasitology    October 6, 2009   Volume 96, Issue 1 157-161 doi: 10.1645/GE-2184.1
Santín M, Vecino JA, Fayer R.This is the first report of Enterocytozoon bieneusi in an equid species. Feces from 195 horses from 4 locations in Colombia were examined for E. bieneusi by polymerase chain reaction. Of these, 21 horses (10.8%) were found positive for E. bieneusi . The prevalence of E. bieneusi in horses 1 yr of age (2.5%). No significant differences in prevalence were observed between male (13.7%) and female horses (9%). Sequencing of the internal transcribed spacer region of the SSUrRNA locus identified 3 genotypes. Two genotypes appear to be unique to horses and were named Horse 1 and Horse 2. A third geno...
The pattern of embryonic fixation and its relationship to pregnancy loss in thoroughbred mares.
Reproduction in domestic animals = Zuchthygiene    October 1, 2009   Volume 45, Issue 5 e61-e67 doi: 10.1111/j.1439-0531.2009.01523.x
Sharma S, Davies Morel MC, Dhaliwal GS, Dadarwal D.Ultrasonographic pregnancy records of 195 mares from six Thoroughbred stud farms, over a period of 7 years were retrospectively analysed to assess the effect of various factors on embryonic vesicle (EV) fixation pattern and pregnancy outcome. Of the total of 746 pregnancies analysed, significantly (p < 0.01) more EV fixations were evident in the right uterine horn than in the left (53.35% vs 46.65% respectively). There was no significant effect of either, the side of ovulation, or age of the mare, on the side of EV fixation. However, EV fixation, was significantly (p < 0.001) more likely...
Mitochondrial sequence variation in ancient horses from the Carpathian Basin and possible modern relatives.
Genetica    September 30, 2009   Volume 138, Issue 2 211-218 doi: 10.1007/s10709-009-9411-x
Priskin K, Szabó K, Tömöry G, Bogácsi-Szabó E, Csányi B, Eördögh R, Downes CS, Raskó I.Movements of human populations leave their traces in the genetic makeup of the areas affected; the same applies to the horses that move with their owners This study is concerned with the mitochondrial control region genotypes of 31 archaeological horse remains, excavated from pre-conquest Avar and post-conquest Hungarian burial sites in the Carpathian Basin dating from the sixth to the tenth century. To investigate relationships to other ancient and recent breeds, modern Hucul and Akhal Teke samples were also collected, and mtDNA control region (CR) sequences from 76 breeds representing 921 in...
Functional relationships among intrafollicular insulin-like growth factor 1, circulatory gonadotropins, and development of the dominant follicle in mares.
Animal reproduction science    September 30, 2009   Volume 118, Issue 2-4 270-278 doi: 10.1016/j.anireprosci.2009.09.002
Checura CM, Beg MA, Parrish JJ, Ginther OJ.The functional relationships among intrafollicular free insulin-like growth factor 1 (IGF1), circulatory gonadotropins, and development of the dominant follicle were studied in 40 mares in two experiments. A GnRH antagonist (Acyline) was given i.m. at the expected beginning of follicular deviation (largest follicle or F1> or =20mm; Day 0) alone (Acyline group) or in combination with intrafollicular treatment of F1 with rhIGF1 (Acyline/IGF1 group). In Experiment 1, blood samples, follicular-fluid samples, and diameter of F1 were taken on Days 1 and 2. In Experiment 2, daily follicular diamet...
Zonadhesin D3-polypeptides vary among species but are similar in Equus species capable of interbreeding.
Biology of reproduction    September 30, 2009   Volume 82, Issue 2 413-421 doi: 10.1095/biolreprod.109.077891
Tardif S, Brady HA, Breazeale KR, Bi M, Thompson LD, Bruemmer JE, Bailey LB, Hardy DM.Zonadhesin is a rapidly evolving protein in the sperm acrosome that confers species specificity to sperm-zona pellucida adhesion. Though structural variation in zonadhesin likely contributes to its species-specific function, the protein has not previously been characterized in organisms capable of interbreeding. Here we compared properties of zonadhesin in several animals, including the horse (Equus caballus), donkey (E. asinus), and Grevy's zebra (E. grevyi) to determine if variation in zonadhesin correlates with ability of gametes to cross-fertilize. Zonadhesin localized to the apical acroso...
Challenging the current paradigm of equine castration.
Veterinary surgery : VS    September 29, 2009   Volume 38, Issue 7 902-903 doi: 10.1111/j.1532-950X.2009.00591.x
Maxwell JA.No abstract available
Normal function of the hypothalamic-pituitary growth axis in three dwarf Friesian foals.
The Veterinary record    September 29, 2009   Volume 165, Issue 13 373-376 doi: 10.1136/vr.165.13.373
de Graaf-Roelfsema E, Back W, Keizer HA, Stout TA, van der Kolk JH.Serial blood samples were collected from three dwarf Friesian foals to examine their endogenous growth hormone (GH) profiles, and the integrity of the GH-insulin-like growth factor-1 (IGF-1) axis was tested in one of them by examining its responses to the administration of GH-releasing hormone (GHRH) and to 10 days of treatment with recombinant equine GH. The basal serum concentrations of IGF-1 in the three dwarf foals were compared with those in nine age-matched normal foals. All the dwarf foals secreted endogenous GH. Stimulation with 7.0 microg/kg GHRH led to a 1400 per cent increase in pla...
Equine transcriptome quantification using human GeneChip arrays can be improved using genomic DNA hybridisation and probe selection.
Veterinary journal (London, England : 1997)    September 27, 2009   Volume 186, Issue 3 323-327 doi: 10.1016/j.tvjl.2009.08.030
Graham NS, Clutterbuck AL, James N, Lea RG, Mobasheri A, Broadley MR, May ST.Affymetrix GeneChip arrays are a powerful tool for transcriptome profiling and have been applied to a wide range of species. A genomic DNA (gDNA)-based probe selection method has been developed which broadens the range of species to which GeneChips may be successfully applied. This study demonstrated that gDNA-based probe selection on the Affymetrix U133+2 GeneChip array can be used to study the equine transcriptome which, to date, has received only limited attention. More than 29,000 transcripts can be detected in equine brain and liver and in primary cultures of equine articular chondrocytes...
Identification of 21 781 equine microsatellites on the horse genome assembly 2.0.
Animal genetics    September 26, 2009   Volume 41, Issue 2 222 doi: 10.1111/j.1365-2052.2009.01970.x
Mittmann EH, Wrede J, Pook J, Distl O.No abstract available
Role of melastatin-related transient receptor potential channel TRPM1 in the retina: Clues from horses and mice.
The Journal of neuroscience : the official journal of the Society for Neuroscience    September 25, 2009   Volume 29, Issue 38 11720-11722 doi: 10.1523/JNEUROSCI.3275-09.2009
Schmidt TM.No abstract available
Determination of genomic DNA sequences for beta-tubulin isotype 1 from multiple species of cyathostomin and detection of resistance alleles in third-stage larvae from horses with naturally acquired infections.
Parasites & vectors    September 25, 2009   Volume 2 Suppl 2, Issue Suppl 2 S6 doi: 10.1186/1756-3305-2-S2-S6
Lake SL, Matthews JB, Kaplan RM, Hodgkinson JE.Genetic resistance against benzimidazole (BZ) anthelmintics is widespread in cyathostomins, the commonest group of intestinal parasitic nematodes of horses. Studies of BZ-resistant nematodes of sheep, particularly Haemonchus contortus, have indicated that an anthelmintic resistance-conferring T/A polymorphism, encoding an F (phenylalanine) to Y (tyrosine) substitution, in beta-tubulin isotype 1 is present at two loci, codons 167 and 200 (F167Y, F200Y). Recent studies using complementary (c) DNA derived from BZ-susceptible and -resistant cyathostomins identified statistical differences in the f...
Dermal fibroblast-mediated BMP2 therapy to accelerate bone healing in an equine osteotomy model.
Journal of orthopaedic research : official publication of the Orthopaedic Research Society    September 25, 2009   Volume 28, Issue 3 403-411 doi: 10.1002/jor.20978
Ishihara A, Zekas LJ, Litsky AS, Weisbrode SE, Bertone AL.This study evaluated healing of equine metacarpal/metatarsal osteotomies in response to percutaneous injection of autologous dermal fibroblasts (DFbs) genetically engineered to secrete bone morphogenetic protein-2 (BMP2) or demonstrate green fluorescent protein (GFP) gene expression administered 14 days after surgery. Radiographic assessment of bone formation indicated greater and earlier healing of bone defects treated with DFb with BMP2 gene augmentation. Quantitative computed tomography and biomechanical testing revealed greater mineralized callus and torsional strength of DFb-BMP2-treated ...
IgE in horses: occurrence in health and disease.
Veterinary immunology and immunopathology    September 23, 2009   Volume 132, Issue 1 21-30 doi: 10.1016/j.vetimm.2009.09.011
Wagner B.Since the initial characterization of IgE by Ishizaka et al. (1966), IgE was described in several mammalian species. In horses, a single gene encoding the IgE heavy chain constant region (IGHE gene) exists per haploid genome and several allelic variants of the equine IGHE gene were found. IgE occurs in its soluble form in equine serum and physiological concentrations of total IgE are around 1000-fold higher in normal horse than in normal human serum. Maternal IgE is enriched in the colostrum and transferred to the neonatal foal after birth. Foals do not produce detectable concentrations of end...
Cloning of IgE-binding proteins from Simulium vittatum and their potential significance as allergens for equine insect bite hypersensitivity.
Veterinary immunology and immunopathology    September 23, 2009   Volume 132, Issue 1 68-77 doi: 10.1016/j.vetimm.2009.09.017
Schaffartzik A, Weichel M, Crameri R, Björnsdóttir TS, Prisi C, Rhyner C, Torsteinsdóttir S, Marti E.Insect bite hypersensitivity (IBH) is an allergic dermatitis of horses caused by bites of Culicoides and sometimes Simulium spp. The aim of this investigation was to identify Simulium allergens associated with IBH. A phage surface display cDNA library expressing recombinant Simulium vittatum salivary gland proteins was screened using sera of IBH-affected horses sensitized to S. vittatum salivary gland proteins as shown in immunoblot, resulting in the identification of seven cDNAs encoding IgE-binding proteins. The deduced amino acid sequences of these proteins showed sequence similarities to a...
Chromosomal assignment of equine genes involved in the development of skeletal, gastrointestinal, cardiovascular and nervous system.
Hereditas    September 22, 2009   Volume 146, Issue 4 177-179 doi: 10.1111/j.1601-5223.2009.02124.x
Zabek T, Bugno M, Klukowska-Rötzler J, Gerber V, Słota E.No abstract available
Genealogical analyses in open populations: the case of three Arab-derived Spanish horse breeds.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    September 22, 2009   Volume 126, Issue 5 335-347 doi: 10.1111/j.1439-0388.2008.00797.x
Cervantes I, Gutiérrez JP, Molina A, Goyache F, Valera M.This research assesses the genetic composition of three Arab-derived Spanish horse breeds as an example to highlight the major shortcomings related to genealogical analyses in open populations and to propose approaches useful to deal with this task. The studbooks of three Spanish Arab (SA)-derived horse breeds, Spanish Anglo-Arab (dAA), Hispano-Arab (dHA) and Spanish Sport Horse (dSSH) and those of their parental breeds SA, Spanish Purebred (SPB) and Thoroughbred (TB), totalling 211 754 individuals, were available. The genealogies of the dAA, dHA and dSSH were analysed not only using the corre...
Pedigree analysis in the Austrian Noriker draught horse: genetic diversity and the impact of breeding for coat colour on population structure.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    September 22, 2009   Volume 126, Issue 5 348-356 doi: 10.1111/j.1439-0388.2008.00790.x
Druml T, Baumung R, Sölkner J.The pedigree of the current Austrian Noriker draught horse population comprising 2808 horses was traced back to the animals considered as founders of this breed. In total, the number of founders was 1991, the maximum pedigree length was 31 generations, with an average of 12.3 complete generations. Population structure in this autochthonous Austrian draught horse breed is defined by seven breeding regions (Carinthia, Lower Austria, Salzburg, Styria, Tyrol, Upper Austria and Vorarlberg) or through six coat colour groups (Bay, Black, Chestnut, Roan, Leopard, Tobiano). Average inbreeding coefficie...
Multi-trait animal model estimation of genetic parameters for linear type and gait traits in the Belgian warmblood horse.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    September 22, 2009   Volume 126, Issue 5 378-386 doi: 10.1111/j.1439-0388.2008.00798.x
Rustin M, Janssens S, Buys N, Gengler N.Genetic parameters for the height at withers, 27 linear type and six linear gait traits were estimated for the Belgian warmblood horse. Observations on 987 mares, mostly 3 years old, were analysed using a multi-trait animal model. The statistical model included appraiser, age and location (date x place of appraisal) as fixed effects. Genetic parameters were estimated using a canonical transformation and an expectation-maximization restricted maximum likelihood algorithm with an additional deceleration step. Estimates of heritability for the 33 linear traits were between 0.15 and 0.55. Heritabi...