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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Human chorionic gonadotropin-dependent induction of an equine aldo-keto reductase (AKR1C23) with 20alpha-hydroxysteroid dehydrogenase activity during follicular luteinization in vivo.
Journal of molecular endocrinology    May 25, 2006   Volume 36, Issue 3 449-461 doi: 10.1677/jme.1.01987
Brown KA, Boerboom D, Bouchard N, Doré M, Lussier JG, Sirois J.Aldo-keto reductases (AKRs) are multifunctional enzymes capable of acting on a wide variety of substrates, including sex steroids. AKRs having 20alpha-hydroxysteroid dehydrogenase (20alpha-HSD) activity can reduce progesterone to 20alpha-hydroxy-4-pregnen-3-one (20alpha-DHP), a metabolite with lower affinity for the progesterone receptor. The objective of this study was to investigate the regulation of equine AKR1C23 during human chorionic gonadotropin (hCG)-induced ovulation/luteinization. The equine AKR1C23 cDNA was cloned and shown to encode a 322 amino acid protein that is conserved (71-81...
Comparative mapping of oculocutaneous albinism type II (OCA2), transient receptor potential cation channel, subfamily M member 1 (TRPM1) and two equine microsatellites, ASB08 and 1CA43, among four equid species by fluorescence in situ hybridization.
Cytogenetic and genome research    May 24, 2006   Volume 114, Issue 1 93A doi: 10.1159/000091935
Bellone R, Lear T, Adelson DL, Bailey E.No abstract available
Social relationships in a herd of Sorraia horses Part II. Factors affecting affiliative relationships and sexual behaviours.
Behavioural processes    May 19, 2006   Volume 73, Issue 3 231-239 doi: 10.1016/j.beproc.2006.05.005
Heitor F, do Mar Oom M, Vicente L.The influence of age, dominance rank, kinship and aggressiveness over affiliative relationships and sexual behaviours were analysed in a herd of Sorraia horses, Equus caballus, kept under extensive management. Subjects were 10 adult mares 5-18 years old that had known each other since birth, and a stallion introduced into the group for breeding for the first time. Kinship coefficient and dominance rank were the most important factors affecting affiliative relationships. Bonds were reciprocal and stronger among mares with higher kinship. Mares spent more time in proximity to close-ranking and l...
Pathogenesis of equine herpesvirus-associated neurological disease: a revised explanation.
Equine veterinary journal    May 19, 2006   Volume 38, Issue 3 283-287 doi: 10.2746/042516406776866462
Borchers K, Thein R, Sterner-Kock A.In recent years, outbreaks of equine herpesvirus-associated neurological disease (EAND) have been reported with increasing frequency and severity (Thein et al. 1993; McCartan et al. 1995; Friday et al. 2000; van Maanen et al. 2001; Stierstorfer et al. 2002; Cardwell et al. 2003; Studdert et al. 2003). Despite 40 years of worldwide research, EAND cannot be adequately prevented or fully explained. Improvement in diagnosis and detailed genetic characterisation of equine herpesvirus (EHV) strains prompted us to re-evaluate EHV-associated neurological diseases from epizootiological, pathol...
Myopathy in American miniature horses.
Equine veterinary journal    May 19, 2006   Volume 38, Issue 3 272-276 doi: 10.2746/042516406776866381
Myers CJ, Aleman M, Heidmann R, Wilson WD, Madigan JE.No abstract available
Genetic and permanent environmental variability of twinning in Thoroughbred horses estimated via three threshold models.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    May 19, 2006   Volume 123, Issue 3 186-190 doi: 10.1111/j.1439-0388.2006.00575.x
Wolc A, Bresińska A, Szwaczkowski T.Twinning is a serious problem in Thoroughbred horses, as most of the multiple pregnancies are miscarried and live foals present lower performance values. The aim of this study was to estimate the heritability and repeatability of twinning in Thoroughbred horses. A total of 12648 pregnancies of 2033 Thoroughbred mares born between 1929 and 1994 in 11 studs were included. The analysis was performed by the use of AI-REML algorithm under three threshold animal models. The first model included effects of stud, mare's birth period and interaction between them as fixed. The second model included the ...
Cholesterol-to-phospholipid ratio in whole sperm and seminal plasma from fertile stallions and stallions with unexplained subfertility.
Animal reproduction science    May 19, 2006   Volume 99, Issue 1-2 65-71 doi: 10.1016/j.anireprosci.2006.03.018
Brinsko SP, Love CC, Bauer JE, Macpherson ML, Varner DD.Semen samples were collected from six fertile stallions and seven stallions with unexplained infertility. Percentages of motile sperm (77.5 +/- 11.3 versus 67.5 +/- 12.2, P = 0.2), and progressively motile sperm (70.8 +/- 13.6 versus 60.7 +/- 14.0, P = 0.2) were similar between fertile and subfertile stallions, respectively. Morphologic characteristics in ejaculates of control and affected stallions (% normal: 60.2 +/- 18.2 versus 52.9 +/- 11.3, P = 0.4; % abnormal heads 7.3 +/- 4.8 versus 12.1 +/- 5.0, P = 0.11; and % abnormal acrosomes 1.6 +/- 2.1 versus 3.0 +/- 3.4, P = 0.4) did not differ....
Characterisation of lymphocyte subsets in the equine oviduct.
Equine veterinary journal    May 19, 2006   Volume 38, Issue 3 214-218 doi: 10.2746/042516406776866363
Brinsko SP, Ball BA.The equine oviduct is the site of fertilisation and location of embryonic development during the first 5 or 6 days. It therefore has an important influence on mare fertility. Although histopathological changes have been described previously, there is limited information regarding lymphocyte subtypes present in the mucosa of the normal equine oviduct. Objective: To characterise the distribution of CD3+, CD4+, CD8+ and B lymphocytes in the equine oviduct from inseminated mares during oestrus and dioestrus, and from noninseminated mares during the immediate post ovulatory period. Methods: Oviduct...
RT-PCR for detection of all seven genotypes of Lyssavirus genus.
Journal of virological methods    May 19, 2006   Volume 135, Issue 2 281-287 doi: 10.1016/j.jviromet.2006.03.008
Vázquez-Morón S, Avellón A, Echevarría JE.The Lyssavirus genus includes seven species or genotypes named 1-7. Rabies genotypes correlate with geographical distribution and specific hosts. Co-circulation of different lyssaviruses, imported cases, and the presence of unknown viruses, such as Aravan, Khujand, Irkut and West Caucasian Bat Virus, make it necessary to use generic methods able to detect all lyssaviruses. Primer sequences were chosen from conserved regions in all genotypes in order to optimise a generic RT-PCR. Serial dilutions of 12 RNA extracts from all seven Lyssavirus genotypes were examined to compare the sensitivity of ...
Evaluation of genetic and metabolic predispositions and nutritional risk factors for pasture-associated laminitis in ponies.
Journal of the American Veterinary Medical Association    May 9, 2006   Volume 228, Issue 10 1538-1545 doi: 10.2460/javma.228.10.1538
Treiber KH, Kronfeld DS, Hess TM, Byrd BM, Splan RK, Staniar WB.To evaluate genetic and metabolic predispositions and nutritional risk factors for development of pasture-associated laminitis in ponies. Methods: Observational cohort study. Methods: 160 ponies. Methods: A previous diagnosis of laminitis was used to differentiate 54 ponies (PL group) from 106 nonlaminitic ponies (NL group). Pedigree analysis was used to determine a mode of inheritance for ponies with a previous diagnosis of laminitis. In early March, ponies were weighed and scored for body condition and basal venous blood samples were obtained. Plasma was analyzed for glucose, insulin, trigly...
Ubiquitin expression in muscle from horses with polysaccharide storage myopathy.
Veterinary pathology    May 5, 2006   Volume 43, Issue 3 270-275 doi: 10.1354/vp.43-3-270
Valentine BA, Flint TH, Fischer KA.Serial sections of formalin-fixed, paraffin-embedded muscle biopsy specimens from 28 Quarter Horse, Paint, and draft-related breeds, aged 0.5-23 years, were treated with periodic acid-Schiff (PAS) stain for glycogen and were immunostained to detect ubiquitin expression. On the basis of findings in PAS-stained sections, a diagnosis of equine polysaccharide storage myopathy (EPSSM) was made in 22 horses aged 2-23 years (mean, 9.4 years); samples from 6 horses aged 0.5-15 years (mean, 7.3 years) had a normal PAS staining pattern, with no relevant lesions. Ubiquitin expression was detected in all ...
TNF-alpha SNP haplotype frequencies in equidae.
Tissue antigens    May 5, 2006   Volume 67, Issue 5 377-382 doi: 10.1111/j.1399-0039.2006.00581.x
Brown JJ, Ollier WE, Thomson W, Matthews JB, Carter SD, Binns M, Pinchbeck G, Clegg PD.Tumour necrosis factor alpha (TNF-alpha) is a pro-inflammatory cytokine that plays a crucial role in the regulation of inflammatory and immune responses. In all vertebrate species the genes encoding TNF-alpha are located within the major histocompatability complex. In the horse TNF-alpha has been ascribed a role in a variety of important disease processes. Previously two single nucleotide polymorphisms (SNPs) have been reported within the 5' un-translated region of the equine TNF-alpha gene. We have examined the equine TNF-alpha promoter region further for additional SNPs by analysing DNA from...
Selection of a set of reliable reference genes for quantitative real-time PCR in normal equine skin and in equine sarcoids.
BMC biotechnology    April 27, 2006   Volume 6 24 doi: 10.1186/1472-6750-6-24
Bogaert L, Van Poucke M, De Baere C, Peelman L, Gasthuys F, Martens A.Real-time quantitative PCR can be a very powerful and accurate technique to examine gene transcription patterns in different biological conditions. One of the critical steps in comparing transcription profiles is accurate normalisation. In most of the studies published on real-time PCR in horses, normalisation occurred against only one reference gene, usually GAPDH or ACTB, without validation of its expression stability. This might result in unreliable conclusions, because it has been demonstrated that the expression levels of so called "housekeeping genes" may vary considerably in different t...
Ivermectin resistance in Parascaris equorum.
The Veterinary record    April 25, 2006   Volume 158, Issue 16 572 doi: 10.1136/vr.158.16.572-b
Stoneham S, Coles G.No abstract available
Polysaccharide storage myopathy in a 4-year-old Holsteiner gelding.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 145-156 doi: 10.1016/j.cveq.2005.12.004
MacLeay JM.No abstract available
Proceedings of the Ninth International Symposium on Equine Reproduction, Kerkrade, The Netherlands, 6-11 August 2006. Abstracts.
Animal reproduction science    April 22, 2006   Volume 94, Issue 1-4 19-442 doi: 10.1016/j.anireprosci.2006.04.016
No abstract available
Type 1 renal tubular acidosis in a broodmare.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 229-237 doi: 10.1016/j.cveq.2005.12.011
Gull T.No abstract available
Congenital renal dysplasia in a 7-month-old quarter horse colt.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 e63-e69 doi: 10.1016/j.cveq.2005.12.026
Plummer PJ.No abstract available
Polydipsia and polyuria in a weanling colt caused by nephrogenic diabetes insipidus.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 219-227 doi: 10.1016/j.cveq.2005.12.010
Brashier M.No abstract available
Extended phylogeny of equine arteritis virus: division into new subgroups.
Journal of veterinary medicine. B, Infectious diseases and veterinary public health    April 22, 2006   Volume 53, Issue 2 55-58 doi: 10.1111/j.1439-0450.2006.00916.x
Mittelholzer C, Stadejek T, Johansson I, Baule C, Ciabatti I, Hannant D, Paton D, Autorino GL, Nowotny N, Belák S.To determine a conclusive phylogeny, equine arteritis viruses from Italy, Austria, Hungary, Sweden, South Africa and other parts of the world were analysed by reverse-transcription polymerase chain reaction amplification and direct sequencing. The nucleotide sequences corresponding to the variable part of the large glycoprotein GP5, specified by open reading frame 5, were compared and added to a previously published phylogenetic tree in which a clear division between 'European' and 'American' type viruses had been established. Adding the sequences determined in this study and new sequences ret...
Changes in equine hindgut bacterial populations during oligofructose-induced laminitis.
Environmental microbiology    April 21, 2006   Volume 8, Issue 5 885-898 doi: 10.1111/j.1462-2920.2005.00975.x
Milinovich GJ, Trott DJ, Burrell PC, van Eps AW, Thoefner MB, Blackall LL, Al Jassim RA, Morton JM, Pollitt CC.In the horse, carbohydrate overload is thought to play an integral role in the onset of laminitis by drastically altering the profile of bacterial populations in the hindgut. The objectives of this study were to develop and validate microbial ecology methods to monitor changes in bacterial populations throughout the course of experimentally induced laminitis and to identify the predominant oligofructose-utilizing organisms. Laminitis was induced in five horses by administration of oligofructose. Faecal specimens were collected at 8 h intervals from 72 h before to 72 h after the administration ...
Nocardioform placentitis with isolation of Amycolatopsis spp in a Florida-bred mare.
Journal of the American Veterinary Medical Association    April 19, 2006   Volume 228, Issue 8 1234-1239 doi: 10.2460/javma.228.8.1234
Christensen BW, Roberts JF, Pozor MA, Giguere S, Sells SF, Donahue JM.A 4-year-old Thoroughbred mare was evaluated because of placental abnormalities and a retained placental remnant. Results: Microbial culture of the placenta yielded pure growth of Amycolatopsis spp. Histologic examination of the placenta revealed a focally expanding chorionitis with intralesional gram-positive filamentous bacilli and multifocal allantoic adenomatous hyperplasia on the apposing allantoic surface. Results: Treatment with lavage and oxytocin resulted in expulsion of the placental remnant within hours of parturition. The mare did not become pregnant again despite multiple breeding...
Internal restriction sites: quality assurance aids in genotyping. O'Rourke BA, Dennis JA, Healy PJ.Improvements to restriction fragment length polymorphism (RFLP)-based genotyping assays currently used for detection of mutations responsible for bovine ferrochelatase and myophosphorylase deficiencies, and equine hyperkalemic periodic paralysis (HYPP) are described. Reports of sporadic inhibition of restriction enzyme activity suggest a critical factor in RFLP-based genotyping assays should be assurance that restriction enzymes perform to specification with every sample. The RFLP genotyping assays that use either a mismatched recognition sequence in one or both of the oligonucleotides, or inc...
Neuromuscular disease associated with glycogen storage in a Spanish-bred filly.
The Veterinary record    April 18, 2006   Volume 158, Issue 15 513-516 doi: 10.1136/vr.158.15.513
Gil F, Alemán M, Rivero MA, Latorre R, Carrión MA, Aguirre C, Ruíz I, Ayala I.No abstract available
Surfactant protein A and D in the reproductive tract of stallion.
Theriogenology    April 18, 2006   Volume 66, Issue 5 1057-1064 doi: 10.1016/j.theriogenology.2006.02.047
Kankavi O, Ata A, Akif Ciftcioglu M.The presence of surface-active material in the lung alveolus has been known for several decades as being essential for normal lung function. The host defense and controlling inflammatory processes of the lung are the major functions of SP-A and SP-D. SP-A and SP-D were originally demonstrated in alveolar type II cells, but recent studies have shown extrapulmonary expression of SP-A and SP-D indicating systemic roles of these proteins. Present study describes the presence of SP-A and SP-D in the stallion genital tract, prepuce, prostate, testis, and seminal vesicle using Western blotting and im...
A human-horse comparative map based on equine BAC end sequences.
Genomics    April 17, 2006   Volume 87, Issue 6 772-776 doi: 10.1016/j.ygeno.2006.03.002
Leeb T, Vogl C, Zhu B, de Jong PJ, Binns MM, Chowdhary BP, Scharfe M, Jarek M, Nordsiek G, Schrader F, Blöcker H.In an effort to increase the density of sequence-based markers for the horse genome we generated 9473 BAC end sequences (BESs) from the CHORI-241 BAC library with an average read length of 677 bp. BLASTN searches with the BESs revealed 4036 meaningful hits (E <or= 10(-5)) in the human genome that provide useful markers for the human-horse comparative map. The 4036 BLASTN hits allowed the anchoring of 3079 BAC clones to the human genome, on average one corresponding equine BAC clone per megabase of human DNA. We used the BLASTN anchored BESs for an in silico prediction of the gene content an...
Degenerative suspensory ligament desmitis as a systemic disorder characterized by proteoglycan accumulation.
BMC veterinary research    April 12, 2006   Volume 2 12 doi: 10.1186/1746-6148-2-12
Halper J, Kim B, Khan A, Yoon JH, Mueller PO.Degenerative suspensory ligament desmitis (DSLD) is a debilitating disorder thought to be limited to suspensory ligaments of Peruvian Pasos, Peruvian Paso crosses, Arabians, American Saddlebreds, American Quarter Horses, Thoroughbreds, and some European breeds. It frequently leads to persistent, incurable lameness and need to euthanize affected horses. The pathogenesis remains unclear, though the disease appears to run in families. Treatment and prevention are empirical and supportive, and not effective in halting the progression of the disease. Presently, the presumptive diagnosis of DSLD is ...
The variability of cranial morphology in modern horses.
Zoological science    April 11, 2006   Volume 23, Issue 3 289-298 doi: 10.2108/zsj.23.289
Komosa M, Moliński K, Godynicki S.Horses bred nowadays are characterized by high variability of the body build. The variability concerns exterior features and skeleton features. From among the skeleton parts the skull is an element influenced by selection and environmental adaptation. The aim of these investigations was to find whether cranial traits exhibit variability in relation to the body build of horses. To do this, metric parameters of skulls of 43 horses used in the investigations were analysed with various statistical techniques. On the basis of ANOVA, Principal Components Analysis and Canonical Discriminant Analysis ...
Isolation and genetic analysis of Japanese encephalitis virus from a diseased horse in Japan.
The Journal of veterinary medical science    April 7, 2006   Volume 68, Issue 3 293-295 doi: 10.1292/jvms.68.293
Yamanaka T, Tsujimura K, Kondo T, Yasuda W, Okada A, Noda K, Okumura T, Matsumura T.Japanese encephalitis (JE) developed in an unvaccinated half-bred horse kept in Tottori Prefecture, Japan. The animal showed ataxia with pyrexia and low appetite, and ultimately died. A viral strain was isolated from the cerebrum of the horse and was identified as JE virus (JEV) by RT-PCR using JEV specific primers. The isolated JEV was classified into genotype I by nucleotide sequence analysis of the viral envelope gene. We believe that this is the first report of the genotype I strain being isolated from a horse.
Molecular typing of VapA-positive Rhodococcus equi isolates from Jeju native horses, Korea.
The Journal of veterinary medical science    April 7, 2006   Volume 68, Issue 3 249-253 doi: 10.1292/jvms.68.249
Son WG, Lee DS, Yamatoda N, Hatori F, Shimizu N, Kakuda T, Sasaki Y, Tsubaki S, Takai S.We recently demonstrated the presence of virulence-associated protein antigen (VapA)-positive Rhodococcus equi in Jeju Island, Korea. These bacteria contained one of two distinct plasmid types, a 90-kb type II plasmid, which has been found in isolates from the native Kiso horses of Japan, and a new variant, a 90-kb type V plasmid. However, the genotypic characters of the VapA-positive R. equi from Jeju native horses and their environments are poorly understood. Ninety-eight isolates from soil samples and 89 isolates from fecal samples were collected from five farms that breed or have bred Jeju...