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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Congenital renal dysplasia in a 7-month-old quarter horse colt.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 e63-e69 doi: 10.1016/j.cveq.2005.12.026
Plummer PJ.No abstract available
Polydipsia and polyuria in a weanling colt caused by nephrogenic diabetes insipidus.
The Veterinary clinics of North America. Equine practice    April 22, 2006   Volume 22, Issue 1 219-227 doi: 10.1016/j.cveq.2005.12.010
Brashier M.No abstract available
Extended phylogeny of equine arteritis virus: division into new subgroups.
Journal of veterinary medicine. B, Infectious diseases and veterinary public health    April 22, 2006   Volume 53, Issue 2 55-58 doi: 10.1111/j.1439-0450.2006.00916.x
Mittelholzer C, Stadejek T, Johansson I, Baule C, Ciabatti I, Hannant D, Paton D, Autorino GL, Nowotny N, Belák S.To determine a conclusive phylogeny, equine arteritis viruses from Italy, Austria, Hungary, Sweden, South Africa and other parts of the world were analysed by reverse-transcription polymerase chain reaction amplification and direct sequencing. The nucleotide sequences corresponding to the variable part of the large glycoprotein GP5, specified by open reading frame 5, were compared and added to a previously published phylogenetic tree in which a clear division between 'European' and 'American' type viruses had been established. Adding the sequences determined in this study and new sequences ret...
Changes in equine hindgut bacterial populations during oligofructose-induced laminitis.
Environmental microbiology    April 21, 2006   Volume 8, Issue 5 885-898 doi: 10.1111/j.1462-2920.2005.00975.x
Milinovich GJ, Trott DJ, Burrell PC, van Eps AW, Thoefner MB, Blackall LL, Al Jassim RA, Morton JM, Pollitt CC.In the horse, carbohydrate overload is thought to play an integral role in the onset of laminitis by drastically altering the profile of bacterial populations in the hindgut. The objectives of this study were to develop and validate microbial ecology methods to monitor changes in bacterial populations throughout the course of experimentally induced laminitis and to identify the predominant oligofructose-utilizing organisms. Laminitis was induced in five horses by administration of oligofructose. Faecal specimens were collected at 8 h intervals from 72 h before to 72 h after the administration ...
Nocardioform placentitis with isolation of Amycolatopsis spp in a Florida-bred mare.
Journal of the American Veterinary Medical Association    April 19, 2006   Volume 228, Issue 8 1234-1239 doi: 10.2460/javma.228.8.1234
Christensen BW, Roberts JF, Pozor MA, Giguere S, Sells SF, Donahue JM.A 4-year-old Thoroughbred mare was evaluated because of placental abnormalities and a retained placental remnant. Results: Microbial culture of the placenta yielded pure growth of Amycolatopsis spp. Histologic examination of the placenta revealed a focally expanding chorionitis with intralesional gram-positive filamentous bacilli and multifocal allantoic adenomatous hyperplasia on the apposing allantoic surface. Results: Treatment with lavage and oxytocin resulted in expulsion of the placental remnant within hours of parturition. The mare did not become pregnant again despite multiple breeding...
Internal restriction sites: quality assurance aids in genotyping. O'Rourke BA, Dennis JA, Healy PJ.Improvements to restriction fragment length polymorphism (RFLP)-based genotyping assays currently used for detection of mutations responsible for bovine ferrochelatase and myophosphorylase deficiencies, and equine hyperkalemic periodic paralysis (HYPP) are described. Reports of sporadic inhibition of restriction enzyme activity suggest a critical factor in RFLP-based genotyping assays should be assurance that restriction enzymes perform to specification with every sample. The RFLP genotyping assays that use either a mismatched recognition sequence in one or both of the oligonucleotides, or inc...
Neuromuscular disease associated with glycogen storage in a Spanish-bred filly.
The Veterinary record    April 18, 2006   Volume 158, Issue 15 513-516 doi: 10.1136/vr.158.15.513
Gil F, Alemán M, Rivero MA, Latorre R, Carrión MA, Aguirre C, Ruíz I, Ayala I.No abstract available
Surfactant protein A and D in the reproductive tract of stallion.
Theriogenology    April 18, 2006   Volume 66, Issue 5 1057-1064 doi: 10.1016/j.theriogenology.2006.02.047
Kankavi O, Ata A, Akif Ciftcioglu M.The presence of surface-active material in the lung alveolus has been known for several decades as being essential for normal lung function. The host defense and controlling inflammatory processes of the lung are the major functions of SP-A and SP-D. SP-A and SP-D were originally demonstrated in alveolar type II cells, but recent studies have shown extrapulmonary expression of SP-A and SP-D indicating systemic roles of these proteins. Present study describes the presence of SP-A and SP-D in the stallion genital tract, prepuce, prostate, testis, and seminal vesicle using Western blotting and im...
A human-horse comparative map based on equine BAC end sequences.
Genomics    April 17, 2006   Volume 87, Issue 6 772-776 doi: 10.1016/j.ygeno.2006.03.002
Leeb T, Vogl C, Zhu B, de Jong PJ, Binns MM, Chowdhary BP, Scharfe M, Jarek M, Nordsiek G, Schrader F, Blöcker H.In an effort to increase the density of sequence-based markers for the horse genome we generated 9473 BAC end sequences (BESs) from the CHORI-241 BAC library with an average read length of 677 bp. BLASTN searches with the BESs revealed 4036 meaningful hits (E <or= 10(-5)) in the human genome that provide useful markers for the human-horse comparative map. The 4036 BLASTN hits allowed the anchoring of 3079 BAC clones to the human genome, on average one corresponding equine BAC clone per megabase of human DNA. We used the BLASTN anchored BESs for an in silico prediction of the gene content an...
Degenerative suspensory ligament desmitis as a systemic disorder characterized by proteoglycan accumulation.
BMC veterinary research    April 12, 2006   Volume 2 12 doi: 10.1186/1746-6148-2-12
Halper J, Kim B, Khan A, Yoon JH, Mueller PO.Degenerative suspensory ligament desmitis (DSLD) is a debilitating disorder thought to be limited to suspensory ligaments of Peruvian Pasos, Peruvian Paso crosses, Arabians, American Saddlebreds, American Quarter Horses, Thoroughbreds, and some European breeds. It frequently leads to persistent, incurable lameness and need to euthanize affected horses. The pathogenesis remains unclear, though the disease appears to run in families. Treatment and prevention are empirical and supportive, and not effective in halting the progression of the disease. Presently, the presumptive diagnosis of DSLD is ...
The variability of cranial morphology in modern horses.
Zoological science    April 11, 2006   Volume 23, Issue 3 289-298 doi: 10.2108/zsj.23.289
Komosa M, Moliński K, Godynicki S.Horses bred nowadays are characterized by high variability of the body build. The variability concerns exterior features and skeleton features. From among the skeleton parts the skull is an element influenced by selection and environmental adaptation. The aim of these investigations was to find whether cranial traits exhibit variability in relation to the body build of horses. To do this, metric parameters of skulls of 43 horses used in the investigations were analysed with various statistical techniques. On the basis of ANOVA, Principal Components Analysis and Canonical Discriminant Analysis ...
Isolation and genetic analysis of Japanese encephalitis virus from a diseased horse in Japan.
The Journal of veterinary medical science    April 7, 2006   Volume 68, Issue 3 293-295 doi: 10.1292/jvms.68.293
Yamanaka T, Tsujimura K, Kondo T, Yasuda W, Okada A, Noda K, Okumura T, Matsumura T.Japanese encephalitis (JE) developed in an unvaccinated half-bred horse kept in Tottori Prefecture, Japan. The animal showed ataxia with pyrexia and low appetite, and ultimately died. A viral strain was isolated from the cerebrum of the horse and was identified as JE virus (JEV) by RT-PCR using JEV specific primers. The isolated JEV was classified into genotype I by nucleotide sequence analysis of the viral envelope gene. We believe that this is the first report of the genotype I strain being isolated from a horse.
Molecular typing of VapA-positive Rhodococcus equi isolates from Jeju native horses, Korea.
The Journal of veterinary medical science    April 7, 2006   Volume 68, Issue 3 249-253 doi: 10.1292/jvms.68.249
Son WG, Lee DS, Yamatoda N, Hatori F, Shimizu N, Kakuda T, Sasaki Y, Tsubaki S, Takai S.We recently demonstrated the presence of virulence-associated protein antigen (VapA)-positive Rhodococcus equi in Jeju Island, Korea. These bacteria contained one of two distinct plasmid types, a 90-kb type II plasmid, which has been found in isolates from the native Kiso horses of Japan, and a new variant, a 90-kb type V plasmid. However, the genotypic characters of the VapA-positive R. equi from Jeju native horses and their environments are poorly understood. Ninety-eight isolates from soil samples and 89 isolates from fecal samples were collected from five farms that breed or have bred Jeju...
Centrosome changes during meiosis in horse oocytes and first embryonic cell cycle organization following parthenogenesis, fertilization and nuclear transfer.
Reproduction (Cambridge, England)    April 6, 2006   Volume 131, Issue 4 661-667 doi: 10.1530/rep.1.00795
Li X, Qin Y, Wilsher S, Allen WR.Various types of cell cycle organization occur in mammals. In this study, centrosome changes during meiosis in horse oocytes, and first cell cycle organization following fertilization, parthenogenesis and nuclear transfer, were monitored. Cumulus oocyte complexes harvested from horse ovaries obtained from slaughtered mares were cultured in vitro. Meiotic oocytes of germinal vesicle (GV), germinal vesicle breakdown (GVBD), metaphase I and II (MI and MII) stages were selected at various set times during in vitro maturation. Embryos at the first cell cycle stage were generated by subjecting MII s...
Relationships of changes in B-mode echotexture and colour-Doppler signals in the wall of the preovulatory follicle to changes in systemic oestradiol concentrations and the effects of human chorionic gonadotrophin in mares.
Reproduction (Cambridge, England)    April 6, 2006   Volume 131, Issue 4 699-709 doi: 10.1530/rep.1.01011
Gastal EL, Gastal MO, Ginther OJ.A duplex grey-scale and colour-Doppler ultrasound instrument was used to study the changes in the wall of the preovulatory follicle in mares. When the follicle reached > or =35 mm (hour 0), mares were randomized into control (n = 16) and human chorionic gonadotropin (hCG)-treated (n = 16) groups. The hCG treatment was given at hour 0. Scanning was done every 12 h until hour 36, every hour between hours 36 and 48, and every 12 h thereafter until ovulation. Blood was sampled every 12 h for oestradiol assay. During the period 0-24 h post-treatment, oestradiol concentrations decreased in the hC...
Sequence analysis of a 212 kb defensin gene cluster on ECA 27q17.
Gene    April 5, 2006   Volume 376, Issue 2 192-198 doi: 10.1016/j.gene.2006.03.006
Looft C, Paul S, Philipp U, Regenhard P, Kuiper H, Distl O, Chowdhary BP, Leeb T.Defensins are a family of evolutionary ancient antimicrobial peptides consisting of three sub-families: alpha-, beta- and theta-defensins. This investigation was focused on the genomic characterization of equine beta-defensins and the investigation of the potential clustering of beta-defensin genes in the equine genome. Six genomic BAC clones were isolated from the CHORI-241 library and one of these was mapped by FISH to ECA 27q17. This location was confirmed by RH-mapping. The contiguous 212 kb sequence of this clone was determined. Sequence analysis revealed the identification of ten pseudog...
Detection of superoxide anion generation by equine spermatozoa.
American journal of veterinary research    April 4, 2006   Volume 67, Issue 4 701-706 doi: 10.2460/ajvr.67.4.701
Sabeur K, Ball BA.To identify the generation of the superoxide anion by equine spermatozoa. Methods: Multiple ejaculates collected from 3 Thoroughbred stallions. Methods: Induced superoxide production by reduced nicotinamide adenine dinucleotides (NAD[P]H; ie, reduced nicotinamide adenine dinucleotide [NADH] and reduced nicotinamide adenine dinucleotide phosphate [NADPH]) was measured by use of a nitroblue tetrazolium (NBT) reduction assay on whole spermatozoa and a cytochrome c reduction assay on isolated membrane fractions of spermatozoa. Localization of superoxide generation was determined by use of NBT cyto...
Construction of a medium-density horse gene map.
Animal genetics    April 1, 2006   Volume 37, Issue 2 145-155 doi: 10.1111/j.1365-2052.2005.01401.x
Perrocheau M, Boutreux V, Chadi S, Mata X, Decaunes P, Raudsepp T, Durkin K, Incarnato D, Iannuzzi L, Lear TL, Hirota K, Hasegawa T, Zhu B, de Jong P....A medium-density map of the horse genome (Equus caballus) was constructed using genes evenly distributed over the human genome. Three hundred and twenty-three exonic primer pairs were used to screen the INRA and the CHORI-241 equine BAC libraries by polymerase chain reaction and by filter hybridization respectively. Two hundred and thirty-seven BACs containing equine gene orthologues, confirmed by sequencing, were isolated. The BACs were localized to horse chromosomes by fluorescent in situ hybridization (FISH). Overall, 165 genes were assigned to the equine genomic map by radiation hybrid (RH...
The effect of simulated censored data on estimates of heritability of longevity in the Thoroughbred racing industry.
Genetics and molecular research : GMR    March 31, 2006   Volume 5, Issue 1 7-15 
Burns EM, Enns RM, Garrick DJ.We examined the impact of censored data on estimates of heritability of longevity. Longevity, defined as the length of productive racing life of an individual, is influenced by many factors. A simulated data set, modelled on the Irish Thoroughbred industry, was used to estimate heritabilities of longevity. Several scenarios representing various levels of censoring of performance data were created. The heritability of longevity was estimated for each scenario and compared to the estimated heritability of 0.120 for the complete data set. It was found that the estimates of heritability (0.107, 0....
Analysis of equid herpesvirus 1 strain variation reveals a point mutation of the DNA polymerase strongly associated with neuropathogenic versus nonneuropathogenic disease outbreaks.
Journal of virology    March 31, 2006   Volume 80, Issue 8 4047-4060 doi: 10.1128/JVI.80.8.4047-4060.2006
Nugent J, Birch-Machin I, Smith KC, Mumford JA, Swann Z, Newton JR, Bowden RJ, Allen GP, Davis-Poynter N.Equid herpesvirus 1 (EHV-1) can cause a wide spectrum of diseases ranging from inapparent respiratory infection to the induction of abortion and, in extreme cases, neurological disease resulting in paralysis and ultimately death. It has been suggested that distinct strains of EHV-1 that differ in pathogenic capacity circulate in the field. In order to investigate this hypothesis, it was necessary to identify genetic markers that allow subgroups of related strains to be identified. We have determined all of the genetic differences between a neuropathogenic strain (Ab4) and a nonneuropathogenic ...
Characterization of an equine mannose-binding lectin and its roles in disease.
Biochemical and biophysical research communications    March 29, 2006   Volume 343, Issue 3 928-936 doi: 10.1016/j.bbrc.2006.03.055
Podolsky MJ, Lasker A, Flaminio MJ, Gowda LD, Ezekowitz RA, Takahashi K.The mannose-binding lectin (MBL), a pattern recognition serum protein, participates in the innate immune system of mammals as an opsonin. In humans, MBL plays a key role in first-line host defense against infection during the lag period prior to the development of a specific immune response. MBL also activates complement via the lectin pathway that requires a MBL-associated serine protease-2 (MASP-2). Homologues of human MBL (hMBL) have been identified in a variety of mammals, fish, and primitive animals such as ascidians. In this study, we report that equine MBL (eMBL) has properties that are...
Monocyte-derived dendritic cells from horses differ from dendritic cells of humans and mice.
Immunology    March 25, 2006   Volume 117, Issue 4 463-473 doi: 10.1111/j.1365-2567.2005.02319.x
Mauel S, Steinbach F, Ludwig H.Dendritic cells (DC) are the initiators of immune responses and are present in most tissues in vivo. To generate myeloid DC from monocytes (MoDC) in vitro the necessary cytokines are granulocyte-macrophage colony-stimulating factor (GM-CSF) and interleukin-4 (IL-4). Using degenerated primers delineated from other species and rapid amplification of cDNA ends reverse transcription-polymerase chain reaction (RACE RT-PCR), the cDNA of equine (eq.) GM-CSF was cloned and found to have a point deletion at the 3'-end of eq.GM-CSF, resulting in a 24-nucleotide extended open reading frame not described ...
Antibody and cellular immune responses following DNA vaccination and EHV-1 infection of ponies.
Veterinary immunology and immunopathology    March 23, 2006   Volume 111, Issue 1-2 81-95 doi: 10.1016/j.vetimm.2006.01.011
Soboll G, Hussey SB, Whalley JM, Allen GP, Koen MT, Santucci N, Fraser DG, Macklin MD, Swain WF, Lunn DP.Equine herpesvirus-1 (EHV-1) is the cause of serious disease with high economic impact on the horse industry, as outbreaks of EHV-1 disease occur every year despite the frequent use of vaccines. Cytotoxic T-lymphocytes (CTLs) are important for protection from primary and reactivating latent EHV-1 infection. DNA vaccination is a powerful technique for stimulating CTLs, and the aim of this study was to assess antibody and cellular immune responses and protection resulting from DNA vaccination of ponies with combinations of EHV-1 genes. Fifteen ponies were divided into three groups of five ponies...
Nutrient transfer across the equine placenta: correlation of structure and function.
Equine veterinary journal    March 16, 2006   Volume 38, Issue 2 175-183 doi: 10.2746/042516406776563341
Wooding FB, Fowden AL.No abstract available
The role of stereology in the study of placental transfer between fetal foal and mare.
Equine veterinary journal    March 16, 2006   Volume 38, Issue 2 106-107 doi: 10.2746/042516406776563387
Sibbons P.No abstract available
Lymphoscintigraphy of draught horses with chronic progressive lymphoedema.
Equine veterinary journal    March 16, 2006   Volume 38, Issue 2 148-151 doi: 10.2746/042516406776563297
de Cock HE, Affolter VK, Wisner ER, Larson RF, Ferraro GL.Early diagnosis of chronic progressive lymphoedema (CPL) may result in more effective interventions and provide a basis for further investigation of whether early diagnosis could be used as a means of eliminating potential genetic influences by cessation of breeding from affected individuals. Objective: Lymphoscintigraphy may be useful in draught horses to differentiate early lesions of CPL from other conditions in the pastern region. Methods: Forelimbs of 2 normal and 5 CPL-affected draught horses were evaluated with lymphoscintigraphy. Results: Lymphoscintigraphy showed clearly the presence ...
Analysis of pedigree and conformation data to explain genetic variability of the horse breed Franches-Montagnes.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    March 15, 2006   Volume 123, Issue 2 114-121 doi: 10.1111/j.1439-0388.2006.00569.x
Poncet PA, Pfister W, Muntwyler J, Glowatzki-Mullis ML, Gaillard C.Franches-Montagnes is the only native horse breed in Switzerland, therefore special efforts should be made for ensuring its survival. The objectives of this study were to characterize the structure of this population as well as genetic variability with pedigree data, conformation traits and molecular markers. Studies were focused to clarify if this population is composed of a heavy- and a light-type subpopulation. Extended pedigree records of 3-year-old stallions (n = 68) and mares (n = 108) were available. Evaluations of body conformation traits as well as pedigree data and molecular markers ...
The Fell pony immunodeficiency syndrome also occurs in the Netherlands: a review and six cases.
Tijdschrift voor diergeneeskunde    March 7, 2006   Volume 131, Issue 4 114-118 
Butler CM, Westermann CM, Koeman JP, Sloet van Oldruitenborgh-Oosterbaan MM.Over the last ten years a fatal syndrome associated with immunodeficiency and severe anaemia has been reported in young Fell pony foals in the UK. Affected foals are usually normal at birth but from the age of 2-4 weeks they progressively lose condition and become severely anaemic. Signs of immunodeficiency become apparent at around 3-4 weeks of age. Morbidity is low but mortality is 100% despite intensive treatment. Affected foals die or are euthanized usually before they reach the age of 3 months. A single autosomal recessive gene is suggested to be on the basis of the syndrome. Recently, af...
Mitochondrial DNA: an important female contribution to thoroughbred racehorse performance.
Mitochondrion    March 3, 2006   Volume 6, Issue 2 53-63 doi: 10.1016/j.mito.2006.01.002
Harrison SP, Turrion-Gomez JL.The mitochondrial DNA (mtDNA) molecule, carrying genes encoding for respiratory chain enzymes, is a primary candidate for demonstrating associations between genotype and athletic performance in mammalian species. In humans, variation at seven protein encoding mitochondrial loci has been implicated in influencing fitness and performance characteristics. Although thoroughbred horses are selected for racing ability, there have not been any previous reported associations between genotypes and racecourse performance. The multi-factorial nature of the inheritance of racing ability is an obvious comp...
The S2 accessory gene of equine infectious anemia virus is essential for expression of disease in ponies.
Virology    February 28, 2006   Volume 349, Issue 1 22-30 doi: 10.1016/j.virol.2005.12.041
Fagerness AJ, Flaherty MT, Perry ST, Jia B, Payne SL, Fuller FJ.Equine infectious anemia virus (EIAV) is a macrophage-tropic lentivirus that persistently infects horses and causes a disease that is characterized by periodic episodes of fever, thrombocytopenia, and viremia. EIAV encodes only four regulatory/accessory genes, (tat, rev, ttm, and S2) and is the least genetically complex of all known lentiviruses. We sought to determine the role of the EIAV S2 accessory gene of EIAV by introducing mutations that would prevent S2 expression on the p19/wenv17 infectious molecular clone. Virus derived from the p19/wenv17 molecular clone is highly virulent and rout...