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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Fracture rate in Thoroughbred racehorses is affected by dam age and parity.
Veterinary journal (London, England : 1997)    September 25, 2006   Volume 174, Issue 2 295-301 doi: 10.1016/j.tvjl.2006.07.023
Verheyen KL, Price JS, Wood JL.This study's aim was to determine the effects of dam age and parity on the rate of fracture in offspring in Thoroughbred racehorses in training for flat racing. It was hypothesised that first foals and those from older mares would have a higher fracture rate than subsequent foals and those from younger mares. A two-year observational cohort study collected data from eight trainers on 335 horses that were monitored since the start of their training as yearlings. Multivariable Poisson regression analyses showed that first foals had a significantly lower fracture rate than subsequent ones (RR=0.3...
Immunolocalisation of desmoglein-1 in equine muzzle skin.
Equine veterinary journal    September 22, 2006   Volume 38, Issue 5 485-487 doi: 10.2746/042516406778400592
Miragliotta V, Donadio E, Felicioli A, Podestà A, Ricciardi MP, Ceccardi S, Abramo F.No abstract available
Equine embryo transfer: review of developing potential.
Equine veterinary journal    September 22, 2006   Volume 38, Issue 5 467-478 doi: 10.2746/042516406778400529
Stout TA.No abstract available
A high-resolution comparative radiation hybrid map of equine chromosome 4q12-q22.
Animal genetics    September 19, 2006   Volume 37, Issue 5 513-517 doi: 10.1111/j.1365-2052.2006.01510.x
Dierks C, Mömke S, Drögemüller C, Leeb T, Chowdhary BP, Distl O.In this study, we present a comprehensive 5000-rad radiation hybrid map of a 40-cM region on equine chromosome 4 (ECA4) that contains quantitative trait loci for equine osteochondrosis. We mapped 29 gene-associated sequence tagged site markers using primers designed from equine expressed sequence tags or BAC clones in the ECA4q12-q22 region. Three blocks of conserved synteny, showing two chromosomal breakpoints, were identified in the segment of ECA4q12-q22. Markers from other segments of HSA7q mapped to ECA13p and ECA4p, and a region of HSA7p was homologous to ECA13p. Therefore, we have impro...
Analysis of a SNP in exon 7 of equine OCA2 and its exclusion as a cause for appaloosa spotting.
Animal genetics    September 19, 2006   Volume 37, Issue 5 525 doi: 10.1111/j.1365-2052.2006.01505.x
Bellone R, Lawson S, Hunter N, Archer S, Bailey E.No abstract available
Horse embryonic stem cell lines from the proliferation of inner cell mass cells.
Stem cells and development    September 19, 2006   Volume 15, Issue 4 523-531 doi: 10.1089/scd.2006.15.523
Li X, Zhou SG, Imreh MP, Ahrlund-Richter L, Allen WR.Inner cell mass (ICM) cells were isolated immunosurgically from day 7-8 horse blastocysts and, after proliferation in vitro for 15-28 passages, three lines of cells were confirmed to be embryonic stem (ES) cells by their continued expression of alkaline phosphatase activity and their ability to bind antisera specific for the recognized stem cell markers, SSEA-1, TRA-1-60, TRA-1-81, and the key embryonic gene Oct-4. When maintained under feeder cell-free conditions in vitro, the three lines of cells differentiated into cells of ectodermal, endodermal, and mesodermal lineages. However, they did ...
Mitochondrial DNA sequence diversity in extant Irish horse populations and in ancient horses.
Animal genetics    September 19, 2006   Volume 37, Issue 5 498-502 doi: 10.1111/j.1365-2052.2006.01506.x
McGahern AM, Edwards CJ, Bower MA, Heffernan A, Park SD, Brophy PO, Bradley DG, MacHugh DE, Hill EW.Equine mitochondrial DNA sequence variation was investigated in three indigenous Irish horse populations (Irish Draught Horse, Kerry Bog Pony and Connemara Pony) and, for context, in 69 other horse populations. There was no evidence of Irish Draught Horse or Connemara Pony sequence clustering, although the majority of Irish Draught Horse sequences (47%) were assigned to haplogroup D. Conversely, 31% of the Kerry Bog Pony sequences were assigned to the rare haplogroup E. In addition to the extant population analyses, ancient DNA sequences were generated from three out of four Irish archaeologic...
Evidence for biogeographic patterning of mitochondrial DNA sequences in Eastern horse populations.
Animal genetics    September 19, 2006   Volume 37, Issue 5 494-497 doi: 10.1111/j.1365-2052.2006.01495.x
McGahern A, Bower MA, Edwards CJ, Brophy PO, Sulimova G, Zakharov I, Vizuete-Forster M, Levine M, Li S, MacHugh DE, Hill EW.Equine mitochondrial DNA (mtDNA) phylogeny reconstruction reveals a complex pattern of variation unlike that seen in other large domesticates. It is likely that this pattern reflects a process of multiple and repeated, although not necessarily independent, domestication events. Until now, no clear geographic affiliation of clades has been apparent. In this study, amova analyses have revealed a significant non-random distribution of the diversity among equine populations when seven newly sequenced Eurasian populations were examined in the context of previously published sequences. The associati...
Distribution of CCR3 mRNA expression in horse tissues.
Veterinary immunology and immunopathology    September 18, 2006   Volume 114, Issue 3-4 238-246 doi: 10.1016/j.vetimm.2006.08.010
Weston MC, Cunningham FM, Collins ME.CCL11 (also known as eotaxin) is a very potent and selective mediator of eosinophil migration which exerts its effects through its receptor, CCR3. In this study we report the cloning of an equine CCR3 cDNA sequence and investigation of the localization of CCR3 mRNA expression in horse tissues. Equine CCR3 displayed high levels of sequence identity with CCR3 sequences in other species. RT-PCR analysis revealed the expression of CCR3 in colon, lung and spleen of normal horses. In situ hybridisation experiments indicated that expression of CCR3 mRNA in colon was predominantly in eosinophils and t...
Nucleotide alterations in the D3 domain of the large subunit of ribosomal DNA among 21 species of equine strongyle.
Molecular and cellular probes    September 16, 2006   Volume 21, Issue 2 111-115 doi: 10.1016/j.mcp.2006.08.008
Zhang L, Hu M, Chilton NB, Huby-Chilton F, Beveridge I, Gasser RB.The expansion segments or divergent (D) domains in the large subunit (LSU) of the ribosomal DNA have been suggested as genetic markers for taxonomic and/or phylogenetic studies of parasites. In the present study, we assessed the degree of sequence variation in the D3 domain and flanking core regions of the LSU for 21 species of equine strongyles (Strongylida: Strongylidae) and determined which positions in the secondary structure of the LSU were associated with the nucleotide alterations. No intraspecific sequence variation was detected in 17 species, for which multiple individual worms were a...
Quantitative genetic aspects of coat color in horses.
Journal of animal science    September 15, 2006   Volume 84, Issue 10 2623-2628 doi: 10.2527/jas.2005-704
Toth Z, Kaps M, Sölkner J, Bodo I, Curik I.The aim of this study was to estimate genetic parameters for coat color in horses. Besides defining coat color classes (gray, chestnut, bay, and black), the phenotypes were also measured quantitatively according to standardized international procedures (Commission Internationale de l'Eclairage L*, a*, b*), where L* describes lightness, a* describes color saturation from red to green, and b* describes color saturation from yellow to blue. The total color saturation was derived from a* and b* and referred to as Chroma. A total of 294 horses from the breeds Lipizzan, Nonius, Arabian Pure Bred, Sh...
Evaluation of single and double centrifugation tube methods for concentrating equine platelets.
Research in veterinary science    September 14, 2006   Volume 81, Issue 2 237-245 doi: 10.1016/j.rvsc.2005.12.008
Argüelles D, Carmona JU, Pastor J, Iborra A, Viñals L, Martínez P, Bach E, Prades M.The aim of this study was to evaluate single and double centrifugation tube methods for concentrating equine platelets. Whole blood samples were collected from clinically normal horses and processed by use of single and double centrifugation tube methods to obtain four platelet concentrates (PCs): PC-A, PC-B, PC-C, and PC-D, which were analyzed using a flow cytometry hematology system for hemogram and additional platelet parameters (mean platelet volume, platelet distribution width, mean platelet component concentration, mean platelet component distribution width). Concentrations of transformi...
Development of loop-mediated isothermal amplification (LAMP) method for diagnosis of equine piroplasmosis.
Veterinary parasitology    September 14, 2006   Volume 143, Issue 2 155-160 doi: 10.1016/j.vetpar.2006.08.014
Alhassan A, Thekisoe OM, Yokoyama N, Inoue N, Motloang MY, Mbati PA, Yin H, Katayama Y, Anzai T, Sugimoto C, Igarashi I.Loop-mediated isothermal amplification (LAMP) is a novel nucleic acid method whereby DNA is amplified with high specificity, efficiency, and rapidity under isothermal conditions using a set of four specifically designed primers and a DNA polymerase with strand displacement activity. In this study, we used LAMP primer sets designed from EMA-1 and Bc 48 genes for detection of Theileria equi and Babesia caballi infections, respectively. These primer sets specifically amplified DNA of the respective parasites. Both primer sets amplified T. equi and B. caballi up to 10(-6) dilution of 10-fold seria...
Analysis of genetic diversity and the determination of relationships among western Mediterranean horse breeds using microsatellite markers.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    September 13, 2006   Volume 123, Issue 5 315-325 doi: 10.1111/j.1439-0388.2006.00603.x
Marletta D, Tupac-Yupanqui I, Bordonaro S, García D, Guastella AM, Criscione A, Cañón J, Dunner S.The distribution of genetic diversity and the genetic relationships among western Mediterranean horse breeds were investigated using microsatellite markers. The examined sample included seven Spanish and three Italian local horse breeds and populations, plus a Spanish Thoroughbred outgroup. The total number of animals examined was 682 (on average 62 animals per breed; range 20-122). The microsatellite marker set analysed provided 128 alleles (10.7 alleles per locus). Within-breed genetic diversity was always high (>0.70), with breeds contributing about 8% of the total genetic variability. T...
Hormonal status of male reproductive system: androgens and estrogens in the testis and epididymis. In vivo and in vitro approaches.
Reproductive biology    September 13, 2006   Volume 6 Suppl 1 43-58 
Bilińska B, Wiszniewska B, Kosiniak-Kamysz K, Kotula-Balak M, Gancarczyk M, Hejmej A, Sadowska J, Marchlewicz M, Kolasa A, Wenda-Rózewicka L.The purpose of this article was to summarize our results on the role of androgens and estrogens in human, rodent and equine testes and epididymides, in both, physiological and patological conditions, obtained in the space of the Solicited Project (084/PO6/2002) financially supported by the State Committee for Scientific Research during the last three years. Testosterone produced by Leydig cells of the testes is clearly the major androgen in the circulation of men and adult males of most mammalian species. However, androgen metabolites make up a significant fraction of total circulating steroid...
Serum lipid and lipoprotein parameters of Turkman horses.
Veterinary clinical pathology    September 13, 2006   Volume 35, Issue 3 332-334 doi: 10.1111/j.1939-165x.2006.tb00142.x
Asadi F, Mohri M, Adibmoradi M, Pourkabir M.Lipid transport systems in animals have been evaluated both as experimental models for lipid and lipoprotein metabolism in humans and to gain insight into the lipid metabolism of specific breeds. The Turkman horse is a pure-blooded horse that lives on the margins of the Caspian Basin; information about serum lipids and lipoproteins in this breed is lacking. Objective: The purpose of this study was to evaluate serum lipid and lipoprotein concentrations in clinically healthy Turkman horses. Methods: Concentrations of triglyceride (TG), total cholesterol (TC), high density lipoprotein cholesterol...
Characterization of galactose-binding proteins in equine testis and spermatozoa.
Animal reproduction science    September 12, 2006   Volume 101, Issue 1-2 74-84 doi: 10.1016/j.anireprosci.2006.08.028
Sabeur K, Ball BA.Carbohydrate-binding proteins are thought to be involved in a myriad of sperm functions including sperm-oviductal and sperm-zona interactions. Recent studies in our laboratory have characterized galactose-binding proteins on equine spermatozoa as possible candidate molecules for sperm adhesion to oviduct epithelial cells. In the current study, equine sperm membrane proteins were subjected to galactose-affinity chromatography, and bound proteins were eluted with excess galactose in a calcium-free buffer. The eluted fraction recovered after galactose-affinity chromatography was used for generati...
Lactoferrin expression in the horse endometrium: relevance in persisting mating-induced endometritis.
Veterinary immunology and immunopathology    September 12, 2006   Volume 114, Issue 1-2 159-167 doi: 10.1016/j.vetimm.2006.08.005
Kolm G, Klein D, Knapp E, Watanabe K, Walter I.Lactoferrin (LF) is an estrogen-regulated glycoprotein with well-described antibacterial and immunomodulatory properties. The present study is the first report on LF expression in horse endometrial specimens. Mares chosen for the study were either resistant or susceptible for persisting mating-induced endometritis (PMIE) during the natural ovulatory cycle and in early pregnancy. Our investigations included immunostaining for LF protein and CD18, a leukocyte marker, as neutrophils are a possible source for LF in the endometrium. Quantification of LF mRNA was performed by use of real-time RT-PCR...
The crystal structure of the Venezuelan equine encephalitis alphavirus nsP2 protease.
Structure (London, England : 1993)    September 12, 2006   Volume 14, Issue 9 1449-1458 doi: 10.1016/j.str.2006.07.010
Russo AT, White MA, Watowich SJ.Alphavirus replication and propagation is dependent on the protease activity of the viral nsP2 protein, which cleaves the nsP1234 polyprotein replication complex into functional components. Thus, nsP2 is an attractive target for drug discovery efforts to combat highly pathogenic alphaviruses. Unfortunately, antiviral development has been hampered by a lack of structural information for the nsP2 protease. Here, we report the crystal structure of the nsP2 protease (nsP2pro) from Venezuelan equine encephalitis alphavirus determined at 2.45 A resolution. The protease structure consists of two dist...
Mucosal permeability of water-soluble drugs in the equine jejunum: a preliminary investigation.
Journal of veterinary pharmacology and therapeutics    September 9, 2006   Volume 29, Issue 5 379-385 doi: 10.1111/j.1365-2885.2006.00757.x
Davis JL, Little D, Blikslager AT, Papich MG.Ussing chambers have been used to study the mucosal permeability of drugs in humans, rats and other species. This data can then be used to develop in vitro/in vivo correlations (IVIVC) for drugs based on the Biopharmaceutics Classification System (BCS). Due to the poor oral bioavailability of many drugs in the horse, this method may be useful for screening drugs before development to determine if they warrant further study. Cephalexin (CPX), marbofloxacin (MAR), metronidazole (MTZ) and fluconazole (FCZ) were chosen for this study based on the wide range of physicochemical properties and bioava...
Variations in equid SLC11A1 (NRAMP1) genes and associations with Rhodococcus equi pneumonia in horses.
Journal of veterinary internal medicine    September 8, 2006   Volume 20, Issue 4 974-979 doi: 10.1892/0891-6640(2006)20[974:viesng]2.0.co;2
Halbert ND, Cohen ND, Slovis NM, Faircloth J, Martens RJ.Rhodococcus equi is an important intracellular pathogen of horses, most commonly causing chronic, suppurative bronchopneumonia in foals. Although most foals likely are exposed to environmental R. equi within the 1st few days of life, only some develop R. equi pneumonia, and the basis of differences in susceptibility among foals currently is unknown. In this study, we investigated solute carrier family 11 member 1 (SLC11A1) gene sequences in the 5' untranslated region, exon 1, and a portion of intron 1 for variations in 3 equid species (horse, donkey, zebra) and compared variants within 3 indep...
Mammalian male mutation bias: impacts of generation time and regional variation in substitution rates.
Journal of molecular evolution    September 4, 2006   Volume 63, Issue 4 537-544 doi: 10.1007/s00239-005-0308-8
Goetting-Minesky MP, Makova KD.In mammals, males undergo a greater number of germline cell divisions compared with females. Thus, the male germline accumulates more DNA replication errors, which result in male mutation bias-a higher mutation rate for males than for females. The phenomenon of male mutation bias has been investigated mostly for rodents and primates, however, it has not been studied in detail for other mammalian orders. Here we sequenced and analyzed five introns of three genes (DBX/DBY, UTX/UTY, and ZFX/ZFY) homologous between X and Y chromosomes in several species of perissodactyls (horses and rhinos) and of...
Diversity and distribution of Escherichia coli genotypes and antibiotic resistance phenotypes in feces of humans, cattle, and horses.
Applied and environmental microbiology    September 1, 2006   Volume 72, Issue 11 6914-6922 doi: 10.1128/AEM.01029-06
Anderson MA, Whitlock JE, Harwood VJ.Escherichia coli is the most completely characterized prokaryotic model organism and one of the dominant indicator organisms for food and water quality testing, yet comparatively little is known about the structure of E. coli populations in their various hosts. The diversities of E. coli populations isolated from the feces of three host species (human, cow, and horse) were compared by two subtyping methods: ribotyping (using HindIII) and antibiotic resistance analysis (ARA). The sampling effort required to obtain a representative sample differed by host species, as E. coli diversity was consis...
Follicle selection in cattle and horses: role of intrafollicular factors.
Reproduction (Cambridge, England)    August 31, 2006   Volume 132, Issue 3 365-377 doi: 10.1530/rep.1.01233
Beg MA, Ginther OJ.The eminent event in follicle selection during a follicular wave in monovular species is diameter deviation, wherein one follicle continues to grow (developing dominant) and other follicles (subordinates) begin to regress. In cattle, the IGF system, oestradiol and LH receptors are involved in the intrafollicular events initiating deviation as indicated by the following: (1) concentrations of free IGF-I and oestradiol in the follicular fluid and number of LH receptors in the follicular wall increase more dramatically in the future dominant follicle than in the future subordinate follicles befor...
Genome of horsepox virus.
Journal of virology    August 31, 2006   Volume 80, Issue 18 9244-9258 doi: 10.1128/JVI.00945-06
Tulman ER, Delhon G, Afonso CL, Lu Z, Zsak L, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL.Here we present the genomic sequence of horsepox virus (HSPV) isolate MNR-76, an orthopoxvirus (OPV) isolated in 1976 from diseased Mongolian horses. The 212-kbp genome contained 7.5-kbp inverted terminal repeats and lacked extensive terminal tandem repetition. HSPV contained 236 open reading frames (ORFs) with similarity to those in other OPVs, with those in the central 100-kbp region most conserved relative to other OPVs. Phylogenetic analysis of the conserved region indicated that HSPV is closely related to sequenced isolates of vaccinia virus (VACV) and rabbitpox virus, clearly grouping to...
[Prokaryotic expression of the major antigenic domain of equine arteritis virus GL protein and the establishment of putative indirect ELISA assay].
Wei sheng wu xue bao = Acta microbiologica Sinica    August 29, 2006   Volume 46, Issue 3 436-440 
Liang CZ, Cao RB, Wei JC, Zhu LH, Chen PY.According to the antigenic analysis of equine arteritis virus (EAV) GL protein, one pair of primers were designed, with which the gene fragment coding the high antigenic domain of EAV GL protein was amplified from the EAV genome. The cloned gene was digested with BamH I and Xho I and then inserted into pET-32a and resulted pET-GL1. The pET-GL1 was transformed into the host cell BL21(DE3) and the expression was optimized including cultivation temperature and concentration of IPTG. The aim protein was highly expressed and the obtained recombinant protein manifested well reactiongenicity as was c...
Long terminal repeats are not the sole determinants of virulence for equine infectious anemia virus.
Archives of virology    August 24, 2006   Volume 152, Issue 1 209-218 doi: 10.1007/s00705-006-0830-z
Tu YB, Zhou T, Yuan XF, Qiu HJ, Xue F, Sun CQ, Wang L, Wu DL, Peng JM, Kong XG, Tong GZ.The long terminal repeats (LTRs) of equine infectious anemia virus donkey leukocyte-attenuated virus (EIAV-DLA) were substituted with those of the wild-type EIAV-L (wt EIAV-L, the parent virus of EIAV-DLA). The resulting chimeric plasmid was designated pOK-LTR DLA/L. Purified pOK-LTR DLA/L was transfected into monocyte-derived macrophage (MDM) cultures prepared from EIAV-negative, heparinized whole blood from a donkey. Eighth-passage cell cultures developed the typical cytopathogenic effects (CPE) of EIAV infection, and virions with typical EIAV profiles were observed with an electron microsco...
Reverse transcriptase-polymerase chain reaction for the detection equine rhinitis B viruses and cell culture isolation of the virus.
Archives of virology    August 24, 2006   Volume 152, Issue 1 137-149 doi: 10.1007/s00705-006-0810-3
Black WD, Hartley CA, Ficorilli NP, Studdert MJ.Equine rhinitis B virus (ERBV), genus Erbovirus, family Picornaviridae occurs as two serotypes, ERBV1 and ERBV2. An ERBV-specific nested reverse transcriptase-polymerase chain reaction (RT-PCR) that amplified a product within the 3D(pol) and 3' non-translated region of the viral genome was developed. The RT-PCR detected all 24 available ERBV1 isolates and one available ERBV2 isolate. The limit of detection for the prototype strain ERBV1.1436/71 was 0.1 50% tissue culture infectious doses. The RT-PCR was used to detect viral RNA in six of 17 nasopharyngeal swab samples from horses that had clin...
Congenital diaphragmatic eventration in a stillborn foal. Jackson C, Collyer PB, Loynachan A.A stillborn full term foal was presented at necropsy. The dilated duodenum and the dorsal and ventral left colon and cecum extended into the thoracic cavity and were encased by a thin transparent membrane originating from the diaphragm. The congenital condition was diagnosed as a developmental anomaly with diaphragmatic eventration. To the authors' knowledge, this is the first report of diaphragmatic eventration in a Thoroughbred stillborn foal.
IdeE, an IgG-endopeptidase of Streptococcus equi ssp. equi.
FEMS microbiology letters    August 23, 2006   Volume 262, Issue 2 230-235 doi: 10.1111/j.1574-6968.2006.00404.x
Lannergård J, Guss B.Streptococcus equi ssp. equi is the causative agent of strangles, a highly contagious and serious disease in the upper respiratory tract of horses. The present study describes the characterization of IdeE, a homolog of the secreted IgG-specific protease IdeS/Mac of Streptococcus pyogenes. The activity of IdeE is compared with the activity of IdeZ, the corresponding enzyme of the closely related S. equi ssp. zooepidemicus. A study of the proteolytic activity of recombinant IdeE and IdeZ on IgG from a selection of mammals shows that only antibodies containing the substrate site of IdeS/Mac are c...