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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
[Sequence comparing of mtDNA D-Loop varied region in Chinese Mongolian horse and External Thoroughbred horse].
Yi chuan = Hereditas    February 26, 2005   Volume 27, Issue 1 91-94 
Mang L, Li JL, Shi YF.Mitochondrial DNA D-Loop varied region 400 bp sequence variations in 4 Chinese Mongolian horses and 4 External Thoroughbred horses were analyzed in this experiment. The results showed that the average nucleotide mutational rate of mtDNA D-Loop varied region in 4 Chinese Mongolian horses was 3.69%, while External Thoroughbred horses were 4.00%. Three types of mutations including transition, transversion and deletion were all found in the investigated mtDNA D-Loop regions, of which transition was the most frequent. Nucleotide mutational loci were abundant, length mutations were found and great d...
Protein folding in classical perspective: folding of horse cytochrome c.
Biochemistry    February 23, 2005   Volume 44, Issue 8 3034-3040 doi: 10.1021/bi047897n
Bhuyan AK, Rao DK, Prabhu NP.Proteins meet with the stipulations of Levinthal. Two test tube variants of ferrocytochrome c (ferrocyt c) whose thermodynamic stabilities are vastly different refold to the same global minimum under a given final native condition, and they do so quickly at rates that do not reflect a strong dependence on the thermodynamic driving force. The transition-state ensemble is more unfolded-like, and the folding barrier offered is energetically sizable. The experiments involve neutral- (pH 7) and alkaline ferrocyt c pH (12.7), whose aqueous stabilities are 18 (+/-0.3) and 3 (+/-0.5) kcal mol(-)(1), r...
Natural recombinant between equine herpesviruses 1 and 4 in the ICP4 gene.
Microbiology and immunology    February 22, 2005   Volume 49, Issue 2 167-179 doi: 10.1111/j.1348-0421.2005.tb03716.x
Pagamjav O, Sakata T, Matsumura T, Yamaguchi T, Fukushi H.Equine herpesvirus 1 (EHV-1) is a pathogen causing rhinopneumonia in young horses, abortion in mares, and myeloencephalitis in adult horses. Two types, EHV-1 P and EHV-1 B, have recently been dominant among 16 electropherotypes. EHV-1 P and EHV-1 B viruses were compared by long and accurate polymerase chain reaction (LA-PCR) and restriction fragment length polymorphism (RFLP) analysis. Differences in restriction sites were found to be focused in ORF64, which encodes the infected cell protein 4 (ICP4), and downstream of the ICP4 gene. The 3 ' -end and downstream of ICP4 gene of EHV-1 B were fou...
A comparison of the intestinal helminth communities of Equidae in Southern Africa.
The Journal of parasitology    February 18, 2005   Volume 90, Issue 6 1263-1273 doi: 10.1645/GE-3353
Matthee S, Krecek RC, McGeoch MA.The intestinal helminth communities of 8 horses, 12 donkeys, 21 Hartmann's mountain zebras, and 44 Burchell's zebras were compared using the original data from 6 studies in South Africa and Namibia. Necropsy and worm recovery techniques were comparable between the studies. Sixty helminth species (58 nematode, 1 cestode, and 1 trematode species) were recorded. There were significant differences in the helminth community structures of the 4 Equus species. The helminth communities of the 2 closely related zebra subspecies were most similar, and they jointly shared 7 helminth species with donkeys ...
The EICP27 protein of equine herpesvirus 1 is recruited to viral promoters by its interaction with the immediate-early protein.
Virology    February 15, 2005   Volume 333, Issue 1 74-87 doi: 10.1016/j.virol.2004.12.014
Albrecht RA, Kim SK, O'Callaghan DJ.The equine herpesvirus 1 (EHV-1) EICP27 protein cooperates with either the immediate-early (IE) or the EICP0 protein to synergistically trans-activate viral promoters. GST-pulldown and co-immunoprecipitation assays revealed that the EICP27 protein's cooperation with the IE or the EICP0 protein involves its physical interaction with these viral proteins. In the case of the IE-EICP27 protein interaction, IE residues 424 to 826 and EICP27 residues 41 to 206 harbor the interactive domains. Electrophoretic mobility shift assays (EMSA) suggested that the EICP27 protein is not a sequence-specific DNA...
[Prolapse of the uterus and cataract: a comparison of veterinary and human medicine in Greco-Roman antiquity].
Schweizer Archiv fur Tierheilkunde    February 8, 2005   Volume 147, Issue 1 11-19 doi: 10.1024/0036-7281.147.1.11
Fischer KD.A number of surgical interventions in ancient veterinary medicine were modelled on the same procedures in human medicine. This is discussed in some detail for the prolapse of the uterus and the couching of the cataract in horses. In the introductory section, the importance of Switzerland and neighbouring areas for the transmission of ancient veterinary medicine is highlighted.
Molecular detection of Leptospira kirschneri in tissues of a prematurely born foal. Vemulapalli R, Langohr IM, Sanchez A, Kiupel M, Bolin CA, Wu CC, Lin TL.Leptospirosis was identified to be the possible cause of premature birth in a foal on a farm with a history of repeated abortions. Using an appropriate polymerase chain reaction (PCR) assay, the presence of Leptospira kirschneri was detected in the tissues of the prematurely born foal. Further confirmation of L. kirschneri was obtained by nucleotide sequence analysis of the PCR-amplified DNA fragment and the partial 16S ribosomal RNA gene sequence. This report further supports mounting evidence that a PCR assay capable of detecting L. kirschneri should be included in routine diagnostic investi...
Genetic characterization of Indian Spiti horses.
Journal of genetics    February 4, 2005   Volume 83, Issue 3 291-295 doi: 10.1007/BF02717899
Chauhan M, Gupta AK, Dhillon S.No abstract available
Possible familial basis to equine polysaccharide storage myopathy.
The Veterinary record    February 4, 2005   Volume 156, Issue 3 95-96 
McDiarmid A.No abstract available
Identification of Cryptosporidium parvum genotype 2 in domestic horses.
The Veterinary record    January 29, 2005   Volume 156, Issue 2 49-50 doi: 10.1136/vr.156.2.49
Chalmers RM, Thomas AL, Butler BA, Morel MC.No abstract available
High-resolution RH map of horse chromosome 22 reveals a putative ancestral vertebrate chromosome.
Genomics    January 29, 2005   Volume 85, Issue 2 188-200 doi: 10.1016/j.ygeno.2004.10.012
Gustafson-Seabury A, Raudsepp T, Goh G, Kata SR, Wagner ML, Tozaki T, Mickelson JR, Womack JE, Skow LC, Chowdhary BP.High-resolution gene maps of individual equine chromosomes are essential to identify genes governing traits of economic importance in the horse. In pursuit of this goal we herein report the generation of a dense map of horse chromosome 22 (ECA22) comprising 83 markers, of which 52 represent specific genes and 31 are microsatellites. The map spans 831 cR over an estimated 64 Mb of physical length of the chromosome, thus providing markers at approximately 770 kb or 10 cR intervals. Overall, the resolution of the map is to date the densest in the horse and is the highest for any of the domesticat...
Characterization of a 2.6 kbp variable region within a class 1 integron found in an Acinetobacter baumannii strain isolated from a horse.
The Journal of antimicrobial chemotherapy    January 28, 2005   Volume 55, Issue 3 367-370 doi: 10.1093/jac/dkh543
Abbott Y, O'Mahony R, Leonard N, Quinn PJ, van der Reijden T, Dijkshoorn L, Fanning S.A complete gene cassette contained in a class 1 integron from a multidrug-resistant (MDR) isolate of Acinetobacter baumannii cultured from a horse was characterized by molecular methods. Methods: Template genomic DNA purified from the A. baumannii isolate was investigated by PCR. A gene cassette-associated amplicon was detected and completely characterized. Results: A 2.6 kbp DNA fragment containing four gene cassettes was amplified from the MDR A. baumannii isolate. Sequence analysis showed it was similar to sequences recently reported in Klebsiella pneumoniae, Serratia marcescens and an Esch...
Prospects for whole genome linkage disequilibrium mapping in thoroughbreds.
Gene    January 22, 2005   Volume 346 127-132 doi: 10.1016/j.gene.2004.10.011
Tozaki T, Hirota K, Hasegawa T, Tomita M, Kurosawa M.Linkage disequilibrium (LD) mapping is often used in searches for genes governing economically significant traits and diseases. The D' coefficient is a commonly used measure of the extent of LD between all possible pairs of alleles at two markers. This study aimed to test the utility of the D' coefficient for LD mapping of a trait in a thoroughbred population. Microsatellite genotype data and grey coat colour as a trait model in a thoroughbred population were used to assess the extent of LD. We demonstrated that LD mapping was a reasonable approach for initial genome-wide scans in a thoroughbr...
Genetic clustering of Borna disease virus natural animal isolates, laboratory and vaccine strains strongly reflects their regional geographical origin.
The Journal of general virology    January 22, 2005   Volume 86, Issue Pt 2 385-398 doi: 10.1099/vir.0.80587-0
Kolodziejek J, Dürrwald R, Herzog S, Ehrensperger F, Lussy H, Nowotny N.The aim of this study was to gain more detailed insights into the genetic evolution and variability of Borna disease virus (BDV). Phylogenetic analyses were performed on field viruses originating from naturally infected animals, the BDV vaccine strain 'Dessau', four widely used laboratory strains and the novel BDV subtype No/98. Four regions of the BDV genome were analysed: the complete p40, p10 and p24 genes and the 5'-untranslated region of the X/P transcript. BDV isolates from the same geographical area exhibited a clearly higher degree of identity to each other than to BDV isolates from ot...
Comparison of HIV-1 and EIAV-based lentiviral vectors in corneal transduction.
Experimental eye research    January 21, 2005   Volume 80, Issue 6 787-794 doi: 10.1016/j.exer.2004.12.005
Beutelspacher SC, Ardjomand N, Tan PH, Patton GS, Larkin DF, George AJ, McClure MO.In this study we compare the ability of self-inactivating Human Immunodeficiency Virus 1 (HIV-1) and Equine Infectious Anaemia Virus (EIAV)-based vectors to mediate gene transfer to rabbit and human corneas and to a murine corneal endothelial cell line. Both vectors were pseudotyped with vesicular stomatitis virus-G (VSV-G) envelope and contained marker transgenes under the control of an internal CMV promoter. For specificity of action, the heterologous promoter in the EIAV-vector was exchanged for an inducible E-Selectin promoter, previously shown to regulate gene-expression in a plasmid syst...
SNARE proteins and caveolin-1 in stallion spermatozoa: possible implications for fertility.
Theriogenology    January 18, 2005   Volume 64, Issue 2 275-291 doi: 10.1016/j.theriogenology.2004.11.021
Gamboa S, Ramalho-Santos J.Proteins implicated in the "SNARE hypothesis" for membrane fusion have been characterized in the acrosome of several mammalian species, and a functional role for these proteins during the acrosome reaction has been proposed. We have investigated the presence of SNAREs in equine sperm, using semen samples obtained from stallions with varying fertility. Immunocytochemical analysis revealed that members of different SNARE families can be detected on the acrosome of equine sperm, notably in the acrosomal cap and equatorial segment. These proteins include the t-SNARE syntaxin, the v-SNARE synaptobr...
cDNA AFLP-based techniques for studying transcript profiles in horses.
Research in veterinary science    January 18, 2005   Volume 79, Issue 2 105-112 doi: 10.1016/j.rvsc.2004.11.006
Cappelli K, Porceddu A, Verini-Supplizi A, Capomaccio S, Marchis FD, Falcinelli M, Gaiti A, Silvestrelli M.The identification of differentially expressed genes is a fundamental prerequisite for understanding the molecular regulation of most physiological and pathological processes. Among the procedures employed to compare mRNA populations, those that are gel-based appear to hold great promise and are considered excellent tools for studying gene expression in species, such as the equine one, for which little genomic information is available. In the present study, we evaluated two techniques for studying mRNA profiles in horse tissue, one referred to the cDNA-amplified fragment length polymorphism (A...
Age-related changes in serum insulin-like growth factor-I, insulin-like growth factor-I binding protein-3 and articular cartilage structure in Thoroughbred horses.
Equine veterinary journal    January 18, 2005   Volume 37, Issue 1 37-42 doi: 10.2746/0425164054406838
Fortier LA, Kornatowski MA, Mohammed HO, Jordan MT, O'Cain LC, Stevens WB.Structural changes in articular cartilage associated with the ageing process require definition for investigators performing developmental and age-related studies, for which information is lacking. Objective: To 1) determine the onset and end of puberty as defined by serum insulin like growth factor (IGF-I) and IGF-binding protein-3 (IGFBP-3) concentrations and 2) correlate articular-epiphyseal cartilage complex structural changes with the onset and end of puberty. Methods: IGF-I and IGFBP-3 were measured in serum samples from normal female and male horses age 9-715 days to determine peak and ...
Semi-nested PCR for the specific detection of Habronema microstoma or Habronema muscae DNA in horse faeces.
Parasitology    January 15, 2005   Volume 129, Issue Pt 6 733-739 doi: 10.1017/s0031182004006122
Traversa D, Giangaspero A, Iorio R, Otranto D, Paoletti B, Gasser RB.Habronema microstoma and Habronema muscae (Spirurida: Habronematidae) are parasitic nematodes which infect the stomach and/or skin of equids. The accurate diagnosis of gastric habronemosis is central to studying its epidemiology, but data on its distribution and prevalence are lacking, mainly due to the limitations of clinical and coprological diagnosis in live horses. To overcome this constraint, a two-step, semi-nested PCR-based assay was validated (utilizing genetic markers in the nuclear ribosomal DNA) for the specific amplification of H. microstoma or H. muscae DNA from the faeces from ho...
Chromatin configuration within the germinal vesicle of horse oocytes: changes post mortem and relationship to meiotic and developmental competence.
Biology of reproduction    January 12, 2005   Volume 72, Issue 5 1142-1150 doi: 10.1095/biolreprod.104.036012
Hinrichs K, Choi YH, Love LB, Varner DD, Love CC, Walckenaer BE.We evaluated the relationship of initial chromatin configuration to time of oocyte recovery and to nuclear maturation after culture in horse oocytes having compact (Cp) and expanded (Ex) cumuli. In addition, we evaluated the effect of oocyte type, time of recovery, and duration of culture on blastocyst development after intracytoplasmic sperm injection. In oocytes collected within 1 h of slaughter, fibrillar and intermediate chromatin configurations were more prevalent in Cp than in Ex oocytes (68% and 12%, respectively). In Cp oocytes collected after a 5- to 9-h delay, the proportions in the ...
Gastrointestinal neuroendocrinology.
The Veterinary clinics of North America. Equine practice    January 8, 2005   Volume 18, Issue 2 205-217 doi: 10.1016/s0749-0739(02)00008-1
Schneider DA, Sayegh AI.There exists individual enteroendocrine cells spread throughout the gastrointestinal mucosa that release specific peptide, as well as nonpeptide, hormones to have various endocrine action on target cells bearing cell surface receptors selectively sensitive to these regulatory substances. Following receptor activation, a series of events is set into motion that serves to transduce the information imparted to the target cell. Such transduction mechanisms are numerous, and may be excitatory or inhibitory to the cell depending upon which G-protein subunits the receptor is coupled.
The equine metabolic syndrome peripheral Cushing’s syndrome.
The Veterinary clinics of North America. Equine practice    January 8, 2005   Volume 18, Issue 2 271-293 doi: 10.1016/s0749-0739(02)00006-8
Johnson PJ.Certain management practices tend to promote the development of obesity (metabolic syndrome) in mature horses as they enter their teenage years. These management practices include the provision of starch-rich (high glycemic index) and fat-supplemented rations to healthy horses that are relatively inactive. Some horse breeds and ponies appear to be genetically predisposed to metabolic syndrome. The accretion of intra-abdominal adiposity by equids is associated with the development of insulin insensitivity (hyperinsulinemia), glucose intolerance, dyslipidemia, hypertension, and insidious-onset l...
Generation and performance of an equine-specific large-scale gene expression microarray.
American journal of veterinary research    January 6, 2005   Volume 65, Issue 12 1664-1673 doi: 10.2460/ajvr.2004.65.1664
Gu W, Bertone AL.To create high-quality sequence data for the generation of an equine gene expression microarray and evaluate array performance by use of lipopolysaccharide (LPS) exposure of synoviocytes. Methods: Public nucleotide sequence database from Equus caballus and synoviocytes from clinically normal adult horses. Methods: Computer procurement of equine gene sequences, probe design, and manufacture of an oligomicroarray were performed. Array performance was evaluated by use of patterns for equine synoviocytes in response to LPS. Results: Starting with 18,924 equine gene sequences, 3,098 equine 3' seque...
Molecular epidemiologic features of Corynebacterium pseudotuberculosis isolated from horses.
American journal of veterinary research    January 6, 2005   Volume 65, Issue 12 1734-1737 doi: 10.2460/ajvr.2004.65.1734
Foley JE, Spier SJ, Mihalyi J, Drazenovich N, Leutenegger CM.To characterize isolates of Corynebacterium pseudotuberculosis from horses, cattle, and sheep in Colorado, Kentucky, Utah, and California in samples collected during perceived epidemics of infection (increased numbers of cases identified) in 2002 and 2003, and determine how closely isolates were related and their possible source. Methods: 54 isolates of C pseudotuberculosis from 49 horses, 4 cattle, and 1 sheep. Methods: Random amplified polymorphic DNA (RAPD) polymerase chain reaction (PCR) assay, PCR assay for the gene encoding the phospholipase D (PLD) toxin, biochemical analyses, and tests...
Expression of the cyclooxygenase isoforms in the prodromal stage of black walnut-induced laminitis in horses.
American journal of veterinary research    January 6, 2005   Volume 65, Issue 12 1724-1729 doi: 10.2460/ajvr.2004.65.1724
Waguespack RW, Cochran A, Belknap JK.To compare the levels of mRNA expression of cycooxygenase (COX)-1 and COX-2 in the digital laminae of normal horses and horses in the developmental stages of laminitis experimentally induced by administration of black walnut extract (BWE). Methods: Samples of mRNA extracted from the digital laminae of 5 control horses and 5 horses at the onset of leukopenia after administration of BWE. Methods: Specimens of laminae were collected from anesthetized horses prior to euthanasia. Expression of COX-1 and COX-2 mRNA in laminae of control and affected horses was evaluated via real-time quantitative po...
Distribution of TNF receptors and TNF receptor-associated intracellular signaling factors on equine tendinocytes in vitro.
The Japanese journal of veterinary research    January 6, 2005   Volume 52, Issue 3 135-144 
Hosaka Y, Sakamoto Y, Kirisawa R, Watanabe T, Ueda H, Takehana K, Yamaguchi M.Although tumor necrosis factor (TNF) alpha is an important key factor in degeneration of equine superficial digital flexor tendon (SDFT), the dynamism of TNF receptors and associated factors on tendinocytes has not been elucidated. To reveal signaling events mediated by TNF-receptors (TNF-Rs) in tendinocytes, we focused on four signaling factors, TNF-R1, TNF-R2, TNF-R-associated factor 2 (TRAF2) and nuclear factor-kappa B (NF-kappaB), and investigated the distribution and production of these factors. Cultured tendinocytes were obtained from SDFTs of thoroughbred horses. The tendinocytes were t...
Present status of equine cloning and clinical characterization of embryonic, fetal, and neonatal development of three cloned mules.
Journal of the American Veterinary Medical Association    January 1, 2005   Volume 225, Issue 11 1694-1699 doi: 10.2460/javma.2004.225.1694
Vanderwall DK, Woods GL, Sellon DC, Tester DF, Schlafer DH, White KL.No abstract available
The effect of age on multiple ovulation rates, multiple pregnancy rates and embryonic vesicle diameter in the mare.
Theriogenology    December 30, 2004   Volume 63, Issue 9 2482-2493 doi: 10.1016/j.theriogenology.2004.09.058
Morel MC, Newcombe JR, Swindlehurst JC.Numerous and conflicting reports exist regarding factors that may effect mare reproductive performance, in particular multiple ovulation (MO) and its consequences. Sequential ultrasonic examination was used to monitor 3075 ovulations in 1581 mainly Thoroughbred mares to ascertain: whether increasing age is associated with an increase in MO; whether this is counteracted by an increase in embryo mortality (EM) prior to Day 13; and whether this embryonic loss may be associated with small-for-age embryonic vesicles (Days 13/14). Overall ovulation rate was 1.31, MO occurring in 29.3% of cycles. MO ...
Parasitemia in an immunocompetent horse experimentally challenged with Sarcocystis neurona sporocysts.
Veterinary parasitology    December 28, 2004   Volume 127, Issue 1 3-8 doi: 10.1016/j.vetpar.2004.08.023
Rossano MG, Schott HC, Murphy AJ, Kaneene JB, Sellon DC, Hines MT, Hochstatter T, Bell JA, Mansfield LS.Equine protozoal myeloencephalitis (EPM) is a serious neurological disease of horses in Americans. Most cases are attributed to infection of the central nervous system with Sarcocystis neurona. Parasitemia has not been demonstrated in immunocompetent horses, but has been documented in one immunocompromised foal. The objective of this study was to isolate viable S. neurona from the blood of immunocompetent horses. Horses used in this study received orally administered S. neurona sporocysts (strain SN 37-R) daily for 112 days at the following doses: 100/day for 28 days, followed by 500/day for 2...
Expression and subcellular localization of the mu-opioid receptor in equine spermatozoa: evidence for its functional role.
Reproduction (Cambridge, England)    December 24, 2004   Volume 129, Issue 1 39-49 doi: 10.1530/rep.1.00284
Albrizio M, Guaricci AC, Maritato F, Sciorsci RL, Mari G, Calamita G, Lacalandra GM, Aiudi GG, Minoia R, Dell'Aquila ME, Minoia P.The development of fertilizing ability in sperm cells is associated with changes in the plasma membrane. However, to date the exact nature of sequentially activated primary receptors and channels and the signal transduction pathways derived from these remains elusive. We analyzed the expression and localization of the mu-opioid receptor in equine spermatozoa. A transcript corresponding to the third extracellular loop that selectively binds mu agonists was amplified, sequenced and compared with the known sequences in humans, rats and cattle. The amplification product showed a high degree of nuc...