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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Bovine papillomavirus DNA in neoplastic and nonneoplastic tissues obtained from horses with and without sarcoids in the western United States.
American journal of veterinary research    May 9, 2001   Volume 62, Issue 5 741-744 doi: 10.2460/ajvr.2001.62.741
Carr EA, Théon AP, Madewell BR, Griffey SM, Hitchcock ME.To determine the incidence of bovine papillomavirus (BPV) type 1 or 2 in sarcoids and other samples of cutaneous tissues collected from horses in the western United States. Methods: 55 horses with sarcoids and 12 horses without sarcoids. Methods: Tissue samples (tumor and normal skin from horses with sarcoids and normal skin, papillomas, and nonsarcoid cutaneous neoplasms from horses without sarcoids) were collected. Tissue samples were analyzed for BPV-1 or -2 DNA, using a polymerase chain reaction (PCR) and restriction fragment length polymorphism. The PCR products from 7 sarcoid-affected ho...
Detection of horses infected naturally with equine infectious anemia virus by nested polymerase chain reaction.
Journal of virological methods    May 5, 2001   Volume 94, Issue 1-2 97-109 doi: 10.1016/s0166-0934(01)00283-x
Nagarajan MM, Simard C.A nested polymerase chain reaction (PCR) amplifying a region of the gag gene of equine infectious anemia virus (EIAV) was developed for the rapid and direct detection of proviral DNA from the peripheral blood of naturally infected horses and was compared with the Coggins test. DNA prepared from white blood cells of 122 field horses from 15 stables with reported cases of EIAV and one seronegative stable were analysed. Amplifications of expected size fragments were obtained by nested PCR for 88 horses using two different sets of primers targeting the gag region. The specificity of the amplified ...
Genetic parameters of eventing horse competition in France.
Genetics, selection, evolution : GSE    May 3, 2001   Volume 33, Issue 2 175-190 doi: 10.1186/1297-9686-33-2-175
Ricard A, Chanu I.Genetic parameters of eventing horse competitions were estimated. About 13 000 horses, 30 000 annual results during 17 years and 110 000 starts in eventing competitions during 8 years were recorded. The measures of performance were logarithmic transformations of annual earnings, annual earnings per start, and annual earnings per place, and underlying variables responsible for ranks in each competition. Heritabilities were low (0.11 / 0.17 for annual results, 0.07 for ranks). Genetic correlations between criteria were high (greater than 0.90) except between ranks and earnings per place (0.58) o...
Mapping of 31 horse genes in BACs by FISH. Lear TL, Brandon R, Piumi F, Terry RR, Guérin G, Thomas S, Bailey E.No abstract available
New approaches for validation of lethal phenotypes and genetic reversion in Helicobacter pylori.
Helicobacter    May 1, 2001   Volume 6, Issue 1 15-23 doi: 10.1046/j.1523-5378.2001.00001.x
McDaniel TK, Dewalt KC, Salama NR, Falkow S.Because of limited genetic tools for use in Helicobacter pylori, tests routinely applied in other bacteria for demonstrating a gene's role in viability and other phenotypes have not been applied to this organism. In a mutational study of putative response regulator genes, we aimed to develop such tools for H. pylori. Methods: We attempted to mutate five response regulator genes by allelic exchange insertional mutagenesis. For genes that yielded no viable mutants, a second copy of the gene was inserted into the chromosome via a suicide vector, and it was seen if providing the second copy would ...
Regulation of ovarian follicular dynamics in farm animals. Implications for manipulation of reproduction.
Theriogenology    May 1, 2001   Volume 55, Issue 6 1211-1239 doi: 10.1016/s0093-691x(01)00479-4
Driancourt MA.In this review, the main features of folliculogenesis are summarized and compared among species. In the past few years, ultrasonography has clarified follicle growth patterns, and our understanding of follicle maturation has improved considerably. As the follicles develop towards the ovulatory stage, three features appear to be highly conserved across all species: 1) the sequence of events (recruitment, selection and dominance); 2) the sequential need for gonadotropins (FSH for recruitment, LH for dominance) and 3) the large variability of numerical parameters (number of waves per cycle, numbe...
SRY-negative XX sex reversal in a pony: a case report.
Theriogenology    April 27, 2001   Volume 55, Issue 5 1051-1057 doi: 10.1016/s0093-691x(01)00465-4
Vaughan L, Schofield W, Ennis S.A three year old pony with sexually ambiguous external genitalia was found to have a normal female karyotype (64, XX) and bilateral inguinal testes. The PCR analysis of blood samples revealed the absence of the Y chromosome sequences SRY, eTSPY and ZFY. No Y chromosome sequences were identified in DNA extracted from the gonads. The mechanism whereby XX sex reversal occurs in the absence of SRY is unknown.
Effects of ovarian input on GnRH and LH secretion immediately postovulation in pony mares.
Theriogenology    April 27, 2001   Volume 55, Issue 5 1095-1106 doi: 10.1016/s0093-691x(01)00469-1
Greaves HE, Kalariotes V, Cleaver BD, Porter MB, Sharp DC.The potential involvement of ovarian factors in regulating GnRH and LH postovulation was studied in ovarian intact (Group 1; n=3) and ovariectomized (OVX; Group 2; n=3) mares (OVX within 12 hr of ovulation). Blood samples were collected every 10 min for 6 hr from jugular vein (JV) and intercavernous sinus (ICS) during estrus and on Day 8 postovulation for LH and GnRH analysis. Additionally, JV samples were collected twice daily (12-hr intervals) for 30 days for LH and progesterone (P4) analysis. A significant treatment x day effect (P<0.0001) describes declining plasma LH concentrations in ...
Epidemiology of Rhodococcus equi strains on Thoroughbred horse farms.
Applied and environmental microbiology    April 25, 2001   Volume 67, Issue 5 2167-2175 doi: 10.1128/AEM.67.5.2167-2175.2001
Morton AC, Begg AP, Anderson GA, Takai S, Lämmler C, Browning GF.Pulsed-field gel electrophoresis of restriction endonuclease-digested genomic DNA from a large collection of clinical isolates of Rhodococcus equi, an important pathogen of foals, was used to compare strain distribution between farms and over time. Forty-four strains were found among 209 isolates, with 5 of these accounting for over half the isolates and the 22 strains isolated more than once accounting for 90% of the isolates. The average genotypic diversity on each farm and in each year was found to be less than the genotypic diversity of the isolates taken as a whole, with 5.2% of the total...
Estimating transmission potential in gastrointestinal nematodes (order: Strongylida).
The Journal of parasitology    April 25, 2001   Volume 87, Issue 2 442-445 doi: 10.1645/0022-3395(2001)087[0442:ETPIGN]2.0.CO;2
Medica DL, Sukhdeo MV.Microparasite virulence (the potential to cause harm in the host) is thought to be regulated by a direct trade-off with pathogen transmission potential, but it is unclear whether similar trade-offs occur in macroparasites (helminths). In this analysis, the transmission potentials of 5 nematode species (order Strongylida), known to differ in their virulence, were estimated using an index based on egg production and larval survivability. Virulence estimates were based on the minimum number of worms that cause host death. In nematode species where mature adults cause pathology (trichonematidic de...
Myofibroblasts in the mucosal layer of the uterine tube.
Italian journal of anatomy and embryology = Archivio italiano di anatomia ed embriologia    April 24, 2001   Volume 103, Issue 4 Suppl 1 259-266 
Walter I.Uterine tubes from cow, sheep, horse, pig, dog, cat, rabbit, and guinea pig were examined immunohistochemically for presence and distribution of contractile cells in the mucosal lamina propria. We tested for the presence of alpha-smooth muscle actin, tropomyosin, desmin, smooth muscle myosin (heavy chain) and cytoskeletal proteins vimentin and cytokeratin. Immunostaining for alpha-smooth muscle actin showed two distribution patterns: either positive cells were freely dispersed in the mucosal lamina propria or a distinct subepithelial layer of positive cells was seen. The first distribution pat...
Separating zebras from horses.
The Journal of the American Board of Family Practice    April 21, 2001   Volume 14, Issue 2 162 
Gordon SF.No abstract available
Investigating the origins of horse domestication.
Equine veterinary journal. Supplement    April 21, 2001   Issue 28 6-14 doi: 10.1111/j.2042-3306.1999.tb05149.x
Levine MA.Before the development of firearms, the horse was crucial to warfare and, before the invention of the steam engine, it was the fastest and most reliable form of land transport. It is crucial to the life of nomadic pastoralists on the Eurasian steppe and played a major role in the evolution of human society during the Bronze Age and Iron Age. Understanding the human past requires knowledge of the origins and development of horse husbandry. The problem of being able to identify the early stages of horse domestication is one that many researchers have grappled with for the most part unsuccessfull...
Equine infectious anemia virus genomic evolution in progressor and nonprogressor ponies.
Journal of virology    April 20, 2001   Volume 75, Issue 10 4570-4583 doi: 10.1128/JVI.75.10.4570-4583.2001
Leroux C, Craigo JK, Issel CJ, Montelaro RC.A primary mechanism of lentivirus persistence is the ability of these viruses to evolve in response to biological and immunological selective pressures with a remarkable array of genetic and antigenic variations that constitute a perpetual natural experiment in genetic engineering. A widely accepted paradigm of lentivirus evolution is that the rate of genetic variation is correlated directly with the levels of virus replication: the greater the viral replication, the more opportunities that exist for genetic modifications and selection of viral variants. To test this hypothesis directly, we ex...
Tales from the DNA of domestic horses.
Science (New York, N.Y.)    April 18, 2001   Volume 292, Issue 5515 218-219 doi: 10.1126/science.292.5515.218
Lister AM.No abstract available
Isolation, characterization and FISH assignments of horse BAC clones containing type I and II markers.
Cytogenetics and cell genetics    April 18, 2001   Volume 92, Issue 1-2 144-148 doi: 10.1159/000056886
Mariat D, Oustry-Vaiman A, Cribiu EP, Raudsepp T, Chowdhary BP, Guérin G.In order to increase the number of markers on the horse cytogenetic map and expand the integration with the linkage map, an equine BAC library was screened for genes and for microsatellites. Eighty-nine intra-exon primers were designed from consensus gene sequences in documented species. After PCR screening, 38 clones containing identified genes were isolated and FISH mapped. These data allowed us to refine the available Zoo-FISH results, to define ten new conserved cytogenetic segments and expand two others, thus leading to the identification of a total of 26 conserved segments between horse ...
Primary structure of kappa-casein isolated from mares’ milk.
The Journal of dairy research    April 6, 2001   Volume 68, Issue 1 53-61 doi: 10.1017/s0022029900004544
Iametti BS, Tedeschi G, Oungre E, Bonomi F.In this work the purification and the complete primary structure of kappa-casein from equine milk are reported for the first time. Mares' milk casein was separated by RP-HPLC into four fractions. Complete primary sequence was obtained by sequence analysis of the protein in the fastest eluting peak isolated by chromatography. This sequence was 95% identical to that reported for the C-terminal portion of the zebras' kappa-casein and showed high similarity with kappa-caseins from sources other than Equidae, confirming that this protein was indeed kappa-casein in equine milk. The presence of post-...
Studies on the supply of immunoglobulin G to newborn camel calves (Camelus dromedarius).
The Journal of dairy research    April 6, 2001   Volume 68, Issue 1 1-7 doi: 10.1017/s0022029900004635
Kamber R, Farah Z, Rusch P, Hassig M.A major problem in camel productivity is the high mortality rate of camel calves in the first 3 months. The causes for mortality are mainly poor management practice and infectious diseases. The purpose of this research, carried out on a ranch in Kenya, was to determine the immunoglobulin G (IgG) concentration in camel colostrum as well as the extent of the calves' passive immunization by maternal antibodies. IgG concentration in colostrum and in the serum of the calf were measured during the first 3 d of life. Evaluation was carried out by comparing the respective values with those for horses ...
Response to immunotherapy in six related horses with urticaria secondary to atopy.
Journal of the American Veterinary Medical Association    March 31, 2001   Volume 218, Issue 5 753-755 doi: 10.2460/javma.2001.218.753
Rees CA.Urticaria secondary to atopy may be a familial problem in some horses. Immunotherapy using a vaccine containing antigens selected on the basis of history and results of intradermal testing can be an effective method of managing atopy in horses; a response to therapy may be seen within 2 months.
Secretion of matrix metalloproteinases 2 and 9 and tissue inhibitor of metalloproteinases into follicular fluid during follicle development in equine ovaries.
Reproduction (Cambridge, England)    March 30, 2001   Volume 121, Issue 4 553-560 
Riley SC, Gibson AH, Leask R, Mauchline DJ, Pedersen HG, Watson ED.Extensive tissue remodelling is required in equine ovaries for follicle growth and development and also migration of the follicle to the ovulatory fossa, where ovulation occurs. The mechanisms for these processes are largely unexplored. Matrix metalloproteinases (MMPs) and their endogenous tissue inhibitors (TIMPs) are important for control of breakdown of extracellular matrix during tissue remodelling. The aims of this study were to determine the pattern and sites of secretion of the gelatinases MMP-2 and -9 and TIMPs into follicular fluid during follicle development in mare ovaries. The pred...
Cytokeratins of the matrices of the chestnut (torus carpeus) and periople in horses with acute laminitis.
American journal of veterinary research    March 30, 2001   Volume 62, Issue 3 425-432 doi: 10.2460/ajvr.2001.62.425
Wattle OS.To determine whether there is a change in the expression of cytokeratins in the epidermal cells of the non-weight-bearing parts of the limb in horses with acute laminitis and thus determine whether the morphologic changes that develop in the periople and chestnut (torus carpeus) of horses early in acute laminitis are caused by inhibition of keratinocyte differentiation. Methods: 8 horses with acute laminitis. Methods: Tissue specimens were obtained from the chestnuts of all 8 horses and from the stratum externum of the hoof wall of 3 horses. Tissue specimens were obtained within 48 hours of th...
Mapping of 13 horse genes by fluorescence in-situ hybridization (FISH) and somatic cell hybrid analysis. Lindgren G, Breen M, Godard S, Bowling A, Murray J, Scavone M, Skow L, Sandberg K, Guérin G, Binns M, Ellegren H.We report fluorescence in-situ hybridization (FISH) and somatic cell hybrid mapping data for 13 different horse genes (ANP, CD2, CLU, CRISP3, CYP17, FGG, IL1RN, IL10, MMP13, PRM1, PTGS2, TNFA and TP53). Primers for PCR amplification of intronic or untranslated regions were designed from horse-specific DNA or mRNA sequences in GenBank. Two different horse bacterial artificial chromosome (BAC) libraries were screened with PCR for clones containing these 13 Type I loci, nine of which were found in the libraries. BAC clones were used as probes in dual colour FISH to confirm their precise chromosom...
Cross reaction of recombinant equine infectious anemia virus antigen to heterologous strains and application for serological survey among horses in the field.
Microbiology and immunology    March 29, 2001   Volume 45, Issue 1 45-50 doi: 10.1111/j.1348-0421.2001.tb01273.x
Sentsui H, Inoshima Y, Murakami K, Akashi H, Purevtseren B, Pagmajav O, Sugiura T.Cross reactivity of equine infectious anemia virus (EIAV) antigen prepared using a recombinant baculovirus containing the p26 gene of strain P337-V70 was examined by the agar gel immunodiffusion (AGID) test and enzyme-linked immunosorbent assay (ELISA). Serum samples serially collected from 13 horses experimentally infected with six different EIAV strains (two or three horses per strain) were subjected to the test. Positive reactions were observed in the AGID test and ELISA before or soon after the first feverish period and continued persistently in most of the horses. The results with recombi...
Hepatoblastoma in a foal.
Equine veterinary journal    March 27, 2001   Volume 33, Issue 2 214-216 doi: 10.1111/j.2042-3306.2001.tb00605.x
Cantile C, Arispici M, Abramo F, Campani D.No abstract available
Variations in cartilage catabolism in different equine joints in response to interleukin-1 in vitro.
The Veterinary record    March 27, 2001   Volume 148, Issue 7 204-206 doi: 10.1136/vr.148.7.204
Fuller CJ, Barr AR, Dieppe PA.An explant system was used to investigate the hypothesis that cartilage from different equine joints might respond differently to challenge with interleukin-1alpha (IL-1alpha). Pairs of normal cartilage samples were taken from the metacarpophalangeal, proximal interphalangeal and distal interphalangeal joints of six horses. One of each pair was stimulated with 10 ng/ml human recombinant IL-1alpha for three days, and the supernatants and remaining cartilage explants were analysed for their total content of glycosaminoglycans. A significantly higher percentage of glycosaminoglycans was released ...
Characterization of equine microsatellites and microsatellite-linked repetitive elements (eMLREs) by efficient cloning and genotyping methods.
DNA research : an international journal for rapid publication of reports on genes and genomes    March 22, 2001   Volume 8, Issue 1 33-45 doi: 10.1093/dnares/8.1.33
Tozaki T, Mashima S, Hirota K, Miura N, Choi-Miura NH, Tomita M.We performed efficient cloning and genotyping methods for isolation of a large number of polymorphic microsatellites. The methods contain the time-efficient cloning method of constructing microsatellite-enriched libraries and the economic genotyping method of fluorescent labeling of PCR products. Eighty novel equine microsatellites cloned were efficiently isolated from the enrichment library and analyzed for genotype polymorphism. Of these, 72 microsatellites were analyzed with a good resolution. The average heterozygosity of all loci was 0.52, and the number of alleles ranged from one to 9 wi...
Molecular cloning of horse Hsp90 cDNA and its comparative analysis with other vertebrate Hsp90 sequences.
The Journal of veterinary medical science    March 22, 2001   Volume 63, Issue 2 115-124 doi: 10.1292/jvms.63.115
Pepin K, Momose F, Ishida N, Nagata K.Heat shock protein 90 (Hsp90), a molecular chaperone, is ubiquitous and involved in numerous cellular processes. To contribute to the relatively small collection of vertebrate Hsp90 sequences in the gene data bank, we cloned and sequenced horse (Equus caballus) Hsp90 alpha and beta cDNAs. This enabled identification of horse-specific primers for development of a convenient PCR-based method that could monitor horse stress tolerance. We analyzed the sequence data comparatively and phylogenetically with other Hsp90 cDNA sequences, and identified vertebrate-specific and isoform-specific conserved ...
Equus–how it all began.
Nature reviews. Genetics    March 21, 2001   Volume 2, Issue 3 163 doi: 10.1038/35056006
Patterson M.No abstract available
beta-Subunit 102-104 residues are crucial to confer FSH activity to equine LH/CG but are not sufficient to confer FSH activity to human CG.
The Journal of endocrinology    March 16, 2001   Volume 169, Issue 1 55-63 doi: 10.1677/joe.0.1690055
Chopineau M, Martinat N, Galet C, Guillou F, Combarnous Y.Horse LH/CG (eLH/CG) and donkey LH/CG (dkLH/CG) are strictly LH-specific in their respective homologous species. However, both bind to the FSH receptors from non-equid species, whereas the zebra hormone (zbLH/CG) does not. The FSH/LH ratio of eLH/CG and of the alphadkbetae hybrid is about tenfold higher than that of dkLH/CG and of the alphaebetadk hybrid, showing that the betae subunit contains the structural features responsible for the high FSH activity of eLH/CG. Only six amino acid positions (51, 94, 95, 102, 103 and 106) are unique to the betae subunit when compared with the betadk and be...
Evaluation of the specificity of five oligoprobes for identification of cyathostomin species from horses.
International journal for parasitology    March 10, 2001   Volume 31, Issue 2 197-204 doi: 10.1016/s0020-7519(00)00161-2
Hodgkinson JE, Love S, Lichtenfels JR, Palfreman S, Ramsey YH, Matthews JB.Here, we report evaluation of five oligoprobes designed from intergenic spacer (IGS) region sequences for identification of cyathostomin species. Oligoprobes were designed for identification of Cylicocyclus ashworthi, Cylicocyclus nassatus, Cylicostephanus longibursatus, Cylicostephanus goldi and a fifth probe designed to identify all members of this tribe. PCR amplification of IGS DNA from 16 cyathostomin species allowed sequence comparison and identification of four putative species-specific probes. Southern blotting of amplified products from 16 species showed that all probes were species-s...