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Topic:Molecular biology

Molecular biology in horses involves the study of molecular processes and genetic mechanisms that underpin equine physiology and health. This field encompasses the analysis of DNA, RNA, proteins, and other biomolecules to understand gene expression, genetic variation, and cellular functions in horses. Techniques such as genomic sequencing, gene expression profiling, and molecular diagnostics are employed to explore topics like hereditary diseases, performance traits, and immune responses in equines. This page assembles peer-reviewed research studies and scholarly articles that investigate the molecular biology of horses, focusing on genetic research, molecular techniques, and their applications in equine science.
[Analysis of the distribution of ribosomal RNA genes on chromosomes of the domestic horse (Equus caballus) using fluorescent in situ hybridization].
Genetika    January 31, 1998   Volume 33, Issue 9 1281-1286 
Deriusheva SE, Loginova IuA, Chiriaeva OG, Iaschak K, Smirnov AF.Distribution of blocks of ribosomal RNA genes along metaphase chromosomes of 26 horses from five breeds was determined by means of a modified method of fluorescence in situ hybridization (FISH) in combination with simultaneous R- banding. Gene loci coding for rRNA were mapped to the region of secondary constriction on the short arm of chromosome 1, and to the pericentromeric regions of chromosomes 27, 28, and 31. The nucleolar organizer region (NOR) on chromosome 27 was not described earlier. Interindividual and interchromosomal NOR polymorphism was detected With the use of a semiquantitative ...
Role of oligosaccharides in the pharmacokinetics of tissue-derived and genetically engineered cholinesterases.
Molecular pharmacology    January 28, 1998   Volume 53, Issue 1 112-122 doi: 10.1124/mol.53.1.112
Saxena A, Ashani Y, Raveh L, Stevenson D, Patel T, Doctor BP.To understand the role of glycosylation in the circulation of cholinesterases, we compared the mean residence time of five tissue-derived and two recombinant cholinesterases (injected intravenously in mice) with their oligosaccharide profiles. Monosaccharide composition analysis revealed differences in the total carbohydrate, galactose, and sialic acid contents. The molar ratio of sialic acid to galactose residues on tetrameric human serum butyrylcholinesterase, recombinant human butyrylcholinesterase, and recombinant mouse acetylcholinesterase was found to be approximately 1.0. For Torpedo ca...
Development and characterization of an in vivo pathogenic molecular clone of equine infectious anemia virus.
Journal of virology    January 28, 1998   Volume 72, Issue 2 1383-1393 doi: 10.1128/JVI.72.2.1383-1393.1998
Cook RF, Leroux C, Cook SJ, Berger SL, Lichtenstein DL, Ghabrial NN, Montelaro RC, Issel CJ.An infectious nonpathogenic molecular clone (19-2-6A) of equine infectious anemia virus (EIAV) was modified by substitution of a 3.3-kbp fragment amplified by PCR techniques from a pathogenic variant (EIAV(PV)) of the cell culture-adapted strain of EIAV (EIAV(PR)). This substitution consisted of coding sequences for 77 amino acids at the carboxyl terminus of the integrase, the S1 (encoding the second exon of tat), S2, and S3 (encoding the second exon of rev) open reading frames, the complete env gene (including the first exon of rev), and the 3' long terminal repeat (LTR). Modified 19-2-6A mol...
Molecular cloning and cartilage gene expression of equine stromelysin 1 (matrix metalloproteinase 3).
American journal of veterinary research    January 27, 1998   Volume 59, Issue 1 30-36 
Balkman CE, Nixon AJ.To clone and determine molecular structure of equine stromelysin 1 (matrix metalloproteinase 3) and examine stromelysin expression in articular cartilage. SAMPLES AND PROCEDURE: Total RNA was harvested from equine arthritic cartilage specimens and was used for reverse transcription and polymerase chain reaction amplification to develop overlapping complementary DNA (cDNA) clones. Four cDNA sequences were ligated into plasmid (pGEM3Z) constructs and subcloned into bacterial expression vectors, and sequence was determined by automated dye terminator sequencing. Stromelysin mRNA expression was as...
Zoo-FISH with microdissected arm specific paints for HSA2, 5, 6, 16, and 19 refines known homology with pig and horse chromosomes.
Mammalian genome : official journal of the International Mammalian Genome Society    January 22, 1998   Volume 9, Issue 1 44-49 doi: 10.1007/s003359900677
Chaudhary R, Raudsepp T, Guan XY, Zhang H, Chowdhary BP.Microdissected arm specific paints (ASPs) for human (HSA) chromosomes (Chrs) 2, 5, 6, 16, and 19 were used as probes on pig (SSC) and horse (ECA) metaphase chromosomes. Regions homologous to individual human arms were delineated in the two species studied. Of the ten ASPs used, HSA6 and 16 ASPs showed complete synteny conservation of individual arms as single blocks/ arms both in pig and horse. A similar trend was, in general, also observed for HSA19 ASPs. However, contrary to these observations, synteny conservation of individual arms of HSA2 and HSA5 was not observed in pig and horse. The ar...
Comparison of nucleic and amino acid sequences and phylogenetic analysis of open reading frames 3 and 4 of various equine arteritis virus isolates.
Veterinary research    January 15, 1998   Volume 28, Issue 6 505-516 
Archambault D, Laganière G, Carman S, St-Laurent G.The genetic variation in equine arteritis virus (EAV) protein-encoding open reading frames (ORFs) 3 and 4 genes was investigated. Nucleic and deduced amino acid sequences from seven different EAV isolates (one European, one American and five Canadian isolates) and the Arvac vaccine strain were compared with those of Bucyrus reference strain. ORF 3 nucleotide and amino acid sequence identities between these isolates (including the Arvac vaccine strain) and the Bucyrus reference strain ranged from 85.6 to 98.8%, and 85.3 to 98.2%, respectively, whereas ORF 4 nucleotide and amino acid sequence id...
Purification and characterization of equine testicular cytochrome P-450 aromatase: comparison with the human enzyme.
Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology    January 7, 1998   Volume 118, Issue 1 217-227 doi: 10.1016/s0305-0491(97)00033-3
Moslemi S, Vibet A, Papadopoulos V, Camoin L, Silberzahn P, Gaillard JL.Cytochrome P-450 aromatase was purified by five chromatographic steps from adult stallion testis. It was first separated from NADPH-cytochrome P-450 reductase (reductase) on omega-aminohexyl-Sepharose 4B then purified to homogeneity on concanavalin A-Sepharose 4B, hydroxyapatite-Sepharose 4B, DEAE-Sepharose CL-6B and on a second hydroxyapatite-Sepharose 4B. On the other hand, purifications of the equine testicular and rat liver reductases, which allowed the reconstitution of aromatase activity in vitro, were achieved for each species in one chromatographic step on an adenosine 2',5'-diphosphat...
Evidence that the alpha-subunit influences the specificity of receptor binding of the equine gonadotrophins.
The Journal of endocrinology    January 1, 1998   Volume 155, Issue 2 241-245 doi: 10.1677/joe.0.1550241
Chopineau M, Martinat N, Marichatou H, Troispoux C, Auge-Gouillou C, Stewart F, Combarnous Y, Guillou F.Horse LH/chorionic gonadotrophin (eLH/CG) exhibits, in addition to its normal LH activity, a high FSH activity in all other species tested. Donkey LH/CG (dkLH/CG) also exhibits FSH activity in other species, but about ten times less than the horse hormone. In order to understand the molecular basis of these dual gonadotrophic activities of eLH/CG and dkLH/CG better, we expressed, in COS-7 cells, hybrids between horse and donkey subunits, between horse or donkey alpha-subunit and human CG beta (hCG beta), and also between the porcine alpha-subunit and horse or donkey LH/CG beta. The resultant r...
Characterisation of gamma herpesviruses in the horse by PCR.
Virology    December 31, 1997   Volume 238, Issue 1 8-13 doi: 10.1006/viro.1997.8825
Franchini M, Akens M, Bracher V, von Fellenberg R.A polymerase chain reaction (PCR) based on a combination of oligonucleotide primers selected using the octamer frequency disparity method with primers specific for EHV-5 (described by other authors) recognized all of a series of gamma herpesvirus field isolates. This PCR produced only three fragments: (1) one EHV-2-specific; (2) one EHV-5-specific; and (3) a fragment that occurred alone or in combination with the other two. Cloning and sequencing of four different isolates yielding only the last PCR product showed that this corresponds to a deletion/insertion mutant of EHV-2. The fact that thi...
Expression of transforming growth factor-beta 1 in normal and dyschondroplastic articular growth cartilage of the young horse.
Equine veterinary journal    December 31, 1997   Volume 29, Issue 6 434-439 doi: 10.1111/j.2042-3306.1997.tb03155.x
Henson FM, Schofield PN, Jeffcott LB.This study describes the distribution pattern of transforming growth factor-beta 1 (TGF-beta 1) mRNA and protein in normal pre- and post natal growth cartilage and alterations present in lesions of dyschondroplasia (osteochondrosis). TGF-beta 1 expression and immunoreactivity have been investigated by in situ hybridisation and immunolocalisation in the articular/epiphyseal growth cartilage of the lateral trochlear ridge of the distal femur. Cartilage was obtained from 19 normal Thoroughbred horses (5 prenatal and 14 post natal horses) and 15 post natal horses with dyschondroplasia (DCP). TGF-b...
Differences between longitudinal and circular smooth muscle in beta-adrenergic control of motility of isolated equine ileum.
American journal of veterinary research    December 24, 1997   Volume 58, Issue 12 1422-1426 
Belloli C, Re G, Arioli F, Badino P, Carcano R, Odore R, Girardi C, Beretta C.To identify beta-adrenoceptor subtypes involved in motility inhibition of circular and longitudinal smooth muscle layers of equine ileum. Methods: Isolated strips of equine ileum circular smooth muscle and membrane preparations from circular and longitudinal muscle layers. Methods: Functional assays of circular muscle preparations and radioligand binding assays and measurements of cAMP production in smooth muscle membranes from circular and longitudinal layers. Results: Selective beta-adrenergic agonists exerted inhibitory effects on circular muscle preparations. Binding studies of cell membra...
Detection of Streptococcus equi in equine nasal swabs and washes by DNA amplification.
The Veterinary record    November 22, 1997   Volume 141, Issue 17 446-447 doi: 10.1136/vr.141.17.446
Timoney JF, Artiushin SC.No abstract available
Characterization of the equine glycoprotein hormone alpha-subunit gene reveals divergence in the mechanism of pituitary and placental expression.
Biology of reproduction    November 22, 1997   Volume 57, Issue 5 1104-1114 doi: 10.1095/biolreprod57.5.1104
Farmerie TA, Abbud RA, Budworth PR, Clay CM, Keri RA, McDowell KJ, Wolfe MW, Nilson JH.The equine glycoprotein hormone alpha-subunit gene is expressed in both pituitary and placenta, unlike that of all other nonprimate mammals studied, in which expression is limited to pituitary. Previous studies of the 5'-flanking region of the equine alpha-subunit promoter have revealed unique characteristics as well as similarities with the human alpha-subunit promoter, which demonstrates a similar pattern of tissue-specific expression. We have cloned and sequenced the equine alpha-subunit gene and have used tissue culture systems and transgenic mice to characterize its expression. Unlike the...
Physical mapping of genetic markers to chromosome 30 using a trisomic horse and evidence for maternal origin of the extra chromosome.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology    November 19, 1997   Volume 5, Issue 6 429-431 doi: 10.1023/a:1018456727811
Bowling AT, Millon LV, Dileanis S.No abstract available
Nine equine dinucleotide repeats at microsatellite loci UCDEQ136, UCDEQ405, UCDEQ412, UCDEQ425, UCDEQ437, UCDEQ467, UCDEQ487, UCDEQ502 and UCDEQ505.
Animal genetics    November 18, 1997   Volume 28, Issue 5 370-371 
Eggleston-Stott ML, DelValle A, Bautista M, Dileanis S, Wictum E, Bowling AT.No abstract available
Equine dinucleotide repeat loci LEX049-LEX063.
Animal genetics    November 18, 1997   Volume 28, Issue 5 378 doi: 10.1111/j.1365-2052.1997.tb03281.x
Coogle L, Bailey E.No abstract available
Nucleic acid amplification for rapid detection of Rhodococcus equi in equine blood and tracheal wash fluids.
American journal of veterinary research    November 15, 1997   Volume 58, Issue 11 1232-1237 
Sellon DC, Walker K, Suyemoto M, Altier C.To evaluate the ability of nucleic acid amplification techniques to detect Rhodococcus equi in equine buffy coat, blood, and tracheal wash fluid and to differentiate between virulent and avirulent strains of the bacteria. Methods: Blood anticoagulated with EDTA and tracheal wash fluid from healthy horses. Methods: Logarithmic dilutions of virulent and avirulent strains of R equi were added to equine buffy coat and tracheal wash fluid samples. The DNA was extracted and amplified by polymerase chain reaction (PCR), using primers specific for the 16S ribosomal subunit gene and the virulence plasm...
Characterisation of equine matrix metalloproteinase 2 and 9; and identification of the cellular sources of these enzymes in joints.
Equine veterinary journal    November 5, 1997   Volume 29, Issue 5 335-342 doi: 10.1111/j.2042-3306.1997.tb03136.x
Clegg PD, Burke RM, Coughlan AR, Riggs CM, Carter SD.The cellular production by resident articular cells and infiltrating inflammatory cells of the gelatinase matrix metalloproteinases (MMP) was investigated by tissue culture methods and analysis of cell supernatants by gelatin zymography. Peripheral blood neutrophils in short term culture produced MMP-9, as did peripheral blood monocytes in culture. Isolated articular chondrocytes in monolayer culture produced both MMP-2 and MMP-9, although articular cartilage maintained as explant culture produced MMP-2 alone. Synovial fibroblasts grown in monolayer culture produced MMP-2 alone, although synov...
Characterization, genetic and physical mapping analysis of 36 horse plasmid and cosmid-derived microsatellites.
Mammalian genome : official journal of the International Mammalian Genome Society    October 8, 1997   Volume 8, Issue 10 745-750 doi: 10.1007/s003359900558
Godard S, Vaiman D, Oustry A, Nocart M, Bertaud M, Guzylack S, Mériaux JC, Cribiu EP, Guérin G.Thirty-six new horse microsatellites (11 from plasmid libraries and 25 from a cosmid library) were isolated and characterized on a panel of four horse breeds. Thirty were found to be polymorphic with heterozygosity levels ranging between 0.20 and 0.87. Twenty-two of the cosmids were physically mapped to R-banded single horse Chromosomes (Chrs) 1, 3, 4, 9, 11, 12, 13, 15, 18, 19, 21, 22, 23 and three to pericentromeric regions. Furthermore, linkage analysis between a selection of 42 DNA markers, including those presented in this study, and 16 conventional markers of the horse hemotype was perfo...
Antimicrobial susceptibilities of equine isolates of Clostridium difficile and molecular characterization of metronidazole-resistant strains.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America    October 6, 1997   Volume 25 Suppl 2 S266-S267 doi: 10.1086/516235
Jang SS, Hansen LM, Breher JE, Riley DA, Magdesian KG, Madigan JE, Tang YJ, Silva J, Hirsh DC.No abstract available
Isolation and characterization of a protein with homology to angiotensin converting enzyme from the periacrosomal plasma membrane of equine spermatozoa.
Molecular reproduction and development    September 18, 1997   Volume 48, Issue 2 251-260 doi: 10.1002/(SICI)1098-2795(199710)48:2<251::AID-MRD13>3.0.CO;2-0
Dobrinski I, Ignotz GG, Fagnan MS, Yudin SI, Ball BA.The periacrosomal plasma membrane of spermatozoa is involved in sperm binding to oviductal epithelial cells and to the zona pellucida. A protein of 68-70 kD molecular mass was purified biochemically from the isolated periacrosomal plasma membrane of equine spermatozoa as a possible receptor for adhesion of spermatozoa to oviductal epithelial cells. A polyclonal antibody raised in rabbits against the purified equine sperm membrane protein recognized the 70 kD and an antigenically related to 32 kD protein in preparations of isolated periacrosomal sperm plasma membrane and in detergent extracted ...
Repeated emergence of epidemic/epizootic Venezuelan equine encephalitis from a single genotype of enzootic subtype ID virus.
Journal of virology    September 1, 1997   Volume 71, Issue 9 6697-6705 doi: 10.1128/JVI.71.9.6697-6705.1997
Powers AM, Oberste MS, Brault AC, Rico-Hesse R, Schmura SM, Smith JF, Kang W, Sweeney WP, Weaver SC.Venezuelan equine encephalitis (VEE) epidemics and equine epizootics occurred periodically in the Americas from the 1920s until the early 1970s, when the causative viruses, subtypes IAB and IC, were postulated to have become extinct. Recent outbreaks in Columbia and Venezuela have renewed interest in the source of epidemic/epizootic viruses and their mechanism of interepizootic maintenance. We performed phylogenetic analyses of VEE virus isolates spanning the entire temporal and geographic range of strains available, using 857-nucleotide reverse transcription-PCR products including the E3 and ...
Evidence for the presence of sodium- and potassium-dependent adenosine triphosphatase alpha1 and beta1 subunit isoforms and their probable role in blastocyst expansion in the preattachment horse conceptus.
Biology of reproduction    September 1, 1997   Volume 57, Issue 3 630-640 doi: 10.1095/biolreprod57.3.630
Waelchli RO, MacPhee DJ, Kidder GM, Betteridge KJ.The unusual hypotonicity of equine blastocyst fluid has prompted us to investigate the role of sodium- and potassium-dependent adenosine triphosphatase (Na+,K+-ATPase) in the process of fluid accumulation in the horse conceptus. Nine mares were used for the experiments. Reverse transcriptase polymerase chain reaction was conducted on two sets of five conceptuses recovered between 12 and 28 days (+/- 1 day) after ovulation. Messenger RNAs encoding the alpha1 and beta1 subunit isoforms of Na+,K+-ATPase were detected in all embryonic tissues examined. Western blot analysis showed that alpha1 and ...
Equine infectious anemia virus utilizes a YXXL motif within the late assembly domain of the Gag p9 protein.
Journal of virology    September 1, 1997   Volume 71, Issue 9 6541-6546 doi: 10.1128/JVI.71.9.6541-6546.1997
Puffer BA, Parent LJ, Wills JW, Montelaro RC.We have previously demonstrated that the Gag p9 protein of equine infectious anemia virus (EIAV) is functionally homologous with Rous sarcoma virus (RSV) p2b and human immunodeficiency virus type 1 (HIV-1) p6 in providing a critical late assembly function in RSV Gag-mediated budding from transfected COS-1 cells (L. J. Parent et al., J. Virol. 69:5455-5460, 1995). In light of the absence of amino acid sequence homology between EIAV p9 and the functional homologs of RSV and HIV-1, we have now designed an EIAV Gag-mediated budding assay to define the late assembly (L) domain peptide sequences con...
Characterization and phylogenetic significance of rhinoceros luteinizing hormone beta (LHbeta) subunit messenger RNA structure, complementary DNA sequence and gene copy number.
Gene    August 22, 1997   Volume 195, Issue 2 131-139 doi: 10.1016/s0378-1119(97)00080-2
Sherman GB, Lund LA, Bunick D, Winn RJ.The luteinizing hormone (LH) beta subunit gene is expressed in the pituitary glands of all mammals, whereas the closely related chorionic gonadotropin (CG) beta subunit genes have been identified only in primates and equids, and are expressed in placenta. In the case of horses, there is a single-copy equine (e) luteinizing hormone/chorionic gonadotropin hormone beta subunit gene (eLH/CGbeta) that (1) is expressed in both pituitary gland and placenta, (2) encodes a characteristic carboxyl terminal peptide (CTP) extension, and (3) transcribes an atypically elongated 5'-untranslated region (UTR) ...
A myoglobin variant with a polar substitution in a conserved hydrophobic cluster in the heme binding pocket.
Biochimica et biophysica acta    August 15, 1997   Volume 1341, Issue 1 1-13 doi: 10.1016/s0167-4838(97)00064-2
Maurus R, Overall CM, Bogumil R, Luo Y, Mauk AG, Smith M, Brayer GD.Well-ordered internal amino acids can contribute significantly to the stability of proteins. To investigate the importance of the hydrophobic packing interface between helices G and H in the proximal heme pocket of horse heart myoglobin, the highly conserved amino acid, Leu104, was substituted with asparagine, a polar amino acid of similar size. The Leu104Asn mutant protein and its recombinant wild-type horse heart myoglobin counterpart were expressed from synthetic genes in Escherichia coli. Thermal denaturation of these two recombinant myoglobins, as studied by measurement of circular dichro...
Equine dinucleotide repeat loci LEX034-LEX048.
Animal genetics    August 1, 1997   Volume 28, Issue 4 309 
Coogle L, Reid R, Bailey E.No abstract available
Equine inhibin/activin beta A-subunit mRNA is expressed in the endometrial gland, but not in the trophoblast, during pregnancy.
Molecular reproduction and development    August 1, 1997   Volume 47, Issue 4 363-369 doi: 10.1002/(SICI)1098-2795(199708)47:4<363::AID-MRD2>3.0.CO;2-I
Yamanouchi K, Hirasawa K, Hasegawa T, Ikeda A, Chang KT, Matsuyama S, Nishihara M, Miyazawa K, Sawasaki T, Tojo H, Tachi C, Takahashi M.The expression of both inhibin alpha- and inhibin/activin beta A-subunit mRNA was examined in equine uteroplacental tissues collected during pregnancy (days 90 to 300). Northern blot analysis revealed that 5 transcripts (7.0, 4.1, 3.4, 2.6, 1.5 kb) of beta A-subunit were present, and the most abundantly expressed transcript was the 1.5 kb one. Relatively high levels of the 1.5 kb transcript were seen in the second trimester of pregnancy compared to what was found in the third trimester. To identify the tissue localization of beta A-subunit mRNA, in situ hybridization was performed, and the pos...
Glyceraldehyde 3-phosphate dehydrogenase is bound to the fibrous sheath of mammalian spermatozoa.
Journal of cell science    August 1, 1997   Volume 110 ( Pt 15) 1821-1829 doi: 10.1242/jcs.110.15.1821
Westhoff D, Kamp G.Evidence is provided that the glycolytic enzyme glyceraldehyde 3-phosphate dehydrogenase is covalently linked to the fibrous sheath. The fibrous sheath is a typical structure of mammalian spermatozoa surrounding the axoneme in the principal piece of the flagellum. More than 90% of boar sperm glyceraldehyde 3-phosphate dehydrogenase activity is sedimented after cell disintegration by centrifugation. Detergents, different salt concentrations or short term incubation with chymotrypsin do not solubilize the enzyme, whereas digestion with trypsin or elastase does. Short term incubation with trypsin...
Muscarinic signaling pathway for calcium release and calcium-activated chloride current in smooth muscle.
The American journal of physiology    August 1, 1997   Volume 273, Issue 2 Pt 1 C509-C519 doi: 10.1152/ajpcell.1997.273.2.C509
Wang YX, Kotlikoff MI.We investigated the muscarinic activation of Ca(2+)-activated Cl- currents [ICl(Ca)] in voltage-clamped equine tracheal myocytes. The threshold of cytosolic free Ca2+ concentration ([Ca2+]i) required for activation of ICl(Ca) was 202 +/- 22 nM, and full activation of the current occurred at 771 +/- 31 nM. Hexahydro-sila-difenidol (M3 antagonist) inhibited the methacholine-induced phasic [Ca2+]i increase and ICl(Ca) in a concentration-dependent manner, whereas methoctramine (M2 antagonist) only slightly attenuated the [Ca2+]i increase and ICl(Ca) (14.8 and 21.4%, respectively), consistent with ...