Analyze Diet

Topic:Polymerase Chain Reaction

Polymerase Chain Reaction (PCR) is a molecular biology technique used to amplify specific DNA sequences, allowing for detailed genetic analysis in horses. This method enables the detection and quantification of genetic material, facilitating research in areas such as genetic disorders, infectious diseases, and population genetics in equine species. PCR applications in horses include identifying pathogens, verifying parentage, and studying genetic variations. The technique's sensitivity and specificity make it a valuable tool in equine veterinary diagnostics and research. This page compiles peer-reviewed research studies and scholarly articles that explore the applications, methodologies, and advancements of PCR in equine science.
Parentage testing of Day 10 equine embryos by amplified PCR analysis of microsatellites.
Equine veterinary journal. Supplement    May 21, 1998   Issue 25 69-71 doi: 10.1111/j.2042-3306.1997.tb05104.x
Guèrand M, Mahla R, Lagneaux D, Amigues Y, Palmer E, Bézard J.Paternity analysis was performed on the DNA of 21 equine embryos collected nonsurgically 10 days after ovulation from known mares, but involving 3 possible sires. After extraction, the DNA of each embryo was typed by radioactive PCR amplification using 10 characterised microsatellites; HMS 1, 2, 5, 6, 7 and 8 (Guérin et al. 1994) and HTG 3, 4, 6 and 10 (Marklund et al. 1994). The 21 dams and 3 sires were genotyped using DNA extracted from blood and amplified by PCR. After electrophoresis and autoradiography of the PCR products of the embryo and parents, the alleles of the embryo were compared...
The Clostridium perfringens enterotoxin from equine isolates; its characterization, sequence and role in foal diarrhoea.
Epidemiology and infection    May 21, 1998   Volume 120, Issue 2 193-200 doi: 10.1017/s0950268897008534
Netherwood T, Binns M, Townsend H, Wood JL, Mumford JA, Chanter N.During a survey of foal diarrhoea between 1991 and 1994, Clostridium perfringens was significantly associated with disease with 56% of cases infected [1]. The contribution of enterotoxigenic C. perfringens to this association, was assessed by use of the reverse passive latex agglutination test for enterotoxin (RPLA; Oxoid Unipath) and vero cell toxicity neutralized by antitoxin on stored faecal samples and sporulated faecal isolates of C. perfringens. Polymerase chain reaction (PCR1) based on the DNA sequence for the whole enterotoxin gene [2] yielded a fragment from an equine isolate of the a...
A single base transversion in the flanking region of an equine microsatellite locus affects amplification of one allele.
Animal genetics    May 20, 1998   Volume 28, Issue 6 438-440 doi: 10.1111/j.1365-2052.1997.00188.x
Eggleston-Stott ML, Delvalle A, Dileanis S, Wictum E, Bowling AT.The equine dinucleotide microsatellite HMS7 is part of a microsatellite panel utilized in a parentage verification programme at the Veterinary Genetics Laboratory (Davis, California, USA). Apparent non-Mendelian inheritance was noted when a Quarter Horse mare was excluded as the parent of two offspring based on analysis of the HMS7 locus. The mare's DNA type qualified her as a parent of the offspring at an additional 20 microsatellite loci. The three animals appeared homozygous for HMS7 with each possessing an allele different from that of the other two animals. Polymerase chain reaction prime...
Endotoxin treatment of equine infectious anaemia virus-infected horse macrophage cultures decreases production of infectious virus.
The Journal of general virology    May 6, 1998   Volume 79 ( Pt 4) 747-755 doi: 10.1099/0022-1317-79-4-747
Smith TA, Davis E, Carpenter S.Lentiviruses replicate in cells of the immune system, and activation of immune cells has been shown to modulate virus replication. To determine the effects of macrophage activation on replication of equine infectious anaemia virus (EIAV), primary horse macrophage cultures (HMCs) were established from 20 different horses, infected with an avirulent strain of EIAV, and stimulated with 5 microg/ml of bacterial endotoxin. Supernatants collected from HMCs were assayed for the presence of tumour necrosis factor (TNF-alpha) and for production of infectious virus. Results indicated that EIAV replicati...
Serologic survey for hantavirus infection in domestic animals and coyotes from New Mexico and northeastern Arizona.
Journal of the American Veterinary Medical Association    April 16, 1998   Volume 212, Issue 7 970-973 
Malecki TM, Jillson GP, Thilsted JP, Elrod J, Torrez-Martinez N, Hjelle B.To determine whether animals had serologic evidence of infection with Sin Nombre virus (SNV). Methods: Prospective serosurvey. Methods: Serum samples were obtained from 145 cats, 85 dogs, 120 horses, and 24 cattle between April 1993 and August 1994 and 54 coyotes between December 1994 and February 1995. Methods: Serum samples were analyzed by western immunoblot assays for reaction with SNV nucleocapsid antigen. Samples with reactivity to SNV nucleocapsid proteins were used to probe multiple-antigen blots containing recombinant fusion proteins derived from prototypic hantaviruses. Lung tissue o...
Screening for bovine papillomavirus in peripheral blood cells of donkeys with and without sarcoids.
Research in veterinary science    March 10, 1998   Volume 63, Issue 3 289-290 doi: 10.1016/s0034-5288(97)90036-9
Nasir L, McFarlane ST, Torrontegui BO, Reid SW.Papillomaviral DNA has been identified in peripheral blood cells of both cattle and humans with and without associated disease and it has been suggested that such cells may act as sites of viral latency. In order to investigate the possibility of latent papillomaviral infection in the aetiopathogenesis of the equine sarcoid, peripheral blood derived DNA samples from 20 healthy and 34 sarcoid-affected donkeys were subject to polymerase chain reaction (PCR) using papillomaviral specific primers. Analysis of blood derived DNA samples failed to demonstrate the presence of papillomaviral DNA in any...
Biotin-labeled DNA probe in a PCR-based assay increases detection sensitivity for the equine hemoparasite Babesia caballi.
Veterinary parasitology    February 27, 1998   Volume 73, Issue 1-2 53-63 doi: 10.1016/s0304-4017(97)00017-4
Sahagun-Ruiz A, Waghela SD, Holman PJ, Chieves LP, Wagner GG.A DNA probe from Babesia caballi (Bc1) was selected by antibody screening of a genomic library. The Bc1 probe hybridized specifically to B. caballi genomic DNA. A polymerase-chain-reaction-based assay for B. caballi DNA was developed from primers deduced from the probe nucleotide sequence. An amplified product of 1.6 kb was detected from as little as 500 fg B. caballi template DNA. Sensitivity increased 1000-fold when the biotin-labeled Bc1 probe was hybridized to the amplicons in a Southern blot.
Detection of Trichinella spiralis in a horse during routine examination in Italy.
International journal for parasitology    February 19, 1998   Volume 27, Issue 12 1613-1621 doi: 10.1016/s0020-7519(97)00133-1
Pozio E, Tamburrini A, Sacchi L, Gomez Morales MA, Corona S, Goffredo E, La Rosa G.Routine examination for Trichinella infection by artificial digestion of 5-g samples of muscle tissue revealed the presence of muscle larvae in one out of 28 horses imported from Romania to an abattoir in Italy. The parasite, identified as Trichinella spiralis by the polymerase chain reaction, showed a reproductive capacity index of 68 in Swiss mice. Light microscope examination of 200 nurse cell-larva complexes showed that 22% of them were calcified and that the capsules of the non-calcified nurse cells were 17.5-27.5 microns (s = 22.67 microns) thick and had very few cellular infiltrates. Th...
Characterisation of gamma herpesviruses in the horse by PCR.
Virology    December 31, 1997   Volume 238, Issue 1 8-13 doi: 10.1006/viro.1997.8825
Franchini M, Akens M, Bracher V, von Fellenberg R.A polymerase chain reaction (PCR) based on a combination of oligonucleotide primers selected using the octamer frequency disparity method with primers specific for EHV-5 (described by other authors) recognized all of a series of gamma herpesvirus field isolates. This PCR produced only three fragments: (1) one EHV-2-specific; (2) one EHV-5-specific; and (3) a fragment that occurred alone or in combination with the other two. Cloning and sequencing of four different isolates yielding only the last PCR product showed that this corresponds to a deletion/insertion mutant of EHV-2. The fact that thi...
Antibodies against equine herpesviruses in free-ranging mountain zebras from Namibia.
Journal of wildlife diseases    December 10, 1997   Volume 33, Issue 4 812-817 doi: 10.7589/0090-3558-33.4.812
Borchers K, Frölich K.Twenty-one blood samples of free-ranging mountain zebras (Equus zebra) from Namibia were tested for equine herpesvirus (EHV-1, -2, -3, -4) specific antibodies by immunofluorescence assay (IFA) and neutralization test (NT). Additionally, type-specific nested polymerase chain reactions (nested PCR) were employed for detection of EHV-1, -2 and -4 DNA. Equine herpesvirus-1 antibodies were detected by IFA in all zebras, while only seven serum samples contained EHV-4 IFA antibodies. Sera with high IFA antibodies also were found to neutralize EHV-1 and -4. Furthermore, 20 zebras were EHV-2 seropositi...
Evaluation of a test for identification of Arabian horses heterozygous for the severe combined immunodeficiency trait.
Journal of the American Veterinary Medical Association    November 28, 1997   Volume 211, Issue 10 1268-1270 
Shin EK, Perryman LE, Meek K.To determine whether a recently developed test would correctly identify horses heterozygous for the severe combined immunodeficiency (SCID) trait. Methods: Case series. Methods: 17 healthy Arabian horses that had previously produced foals with SCID, 1 healthy Arabian foal whose dam and sire had produced foals with SCID, 4 foals with SCID, and 1 healthy non-Arabian foal. Methods: DNA was extracted from leukocytes or fibroblasts, amplified by means of polymerase chain reaction, and hybridized with probes specific for the normal and mutant alleles of the catalytic subunit of DNA-dependent protein...
Nucleic acid amplification for rapid detection of Rhodococcus equi in equine blood and tracheal wash fluids.
American journal of veterinary research    November 15, 1997   Volume 58, Issue 11 1232-1237 
Sellon DC, Walker K, Suyemoto M, Altier C.To evaluate the ability of nucleic acid amplification techniques to detect Rhodococcus equi in equine buffy coat, blood, and tracheal wash fluid and to differentiate between virulent and avirulent strains of the bacteria. Methods: Blood anticoagulated with EDTA and tracheal wash fluid from healthy horses. Methods: Logarithmic dilutions of virulent and avirulent strains of R equi were added to equine buffy coat and tracheal wash fluid samples. The DNA was extracted and amplified by polymerase chain reaction (PCR), using primers specific for the 16S ribosomal subunit gene and the virulence plasm...
Use of transabdominal ultrasound-guided amniocentesis for detection of equid herpesvirus 1-induced fetal infection in utero.
American journal of veterinary research    September 1, 1997   Volume 58, Issue 9 997-1002 
Smith KC, McGladdery AJ, Binns MM, Mumford JA.To evaluate transabdominal ultrasound-guided amniocentesis for detection of equid herpes-virus 1 (EHV-1)-induced fetal infection in utero. Methods: 4 Welsh Mountain mares. Methods: Pregnant mares were inoculated intranasally with EHV-1 during the ninth month of gestation. Amniocentesis was initiated on postinoculation day (PID) 12, and was performed at 2- to 3-day intervals in standing mares under deep sedation. Amniotic fluid samples were tested by virus isolation (VI), polymerase chain reaction (PCR), and immunoperoxidase cytologic examination (IC) for detection of EHV-1. Results: Exposure t...
Comparison of PCR and culture to the indirect fluorescent-antibody test for diagnosis of Potomac horse fever.
Journal of clinical microbiology    September 1, 1997   Volume 35, Issue 9 2215-2219 doi: 10.1128/jcm.35.9.2215-2219.1997
Mott J, Rikihisa Y, Zhang Y, Reed SM, Yu CY.Potomac horse fever is an acute systemic equine disease caused by Ehrlichia risticii. Currently, serologic methods are widely used to diagnose this disease. However, serologic methods cannot determine whether the horse is presently infected or has been exposed to ehrlichial antigens in the past. The purpose of the present study was to compare the sensitivities of the nested PCR and cell culture with that of the indirect fluorescent-antibody (IFA) test for the diagnosis of Potomac horse fever. Blood and fecal specimens serially collected from a pony experimentally infected with E. risticii Mary...
Detection of equine arteritis virus in the semen of carrier stallions by using a sensitive nested PCR assay.
Journal of clinical microbiology    August 1, 1997   Volume 35, Issue 8 2181-2183 doi: 10.1128/jcm.35.8.2181-2183.1997
Gilbert SA, Timoney PJ, McCollum WH, Deregt D.A nested PCR, developed for the detection of equine arteritis virus (EAV) in semen, detected less than 2.5 PFU of EAV per ml of naturally infected seminal plasma. Based on results from testing 88 semen samples from 70 stallions, the sensitivity and specificity of the test were 100 and 97%, respectively.
Successful transfer of biopsied equine embryos.
Theriogenology    August 1, 1997   Volume 48, Issue 3 361-367 doi: 10.1016/s0093-691x(97)00247-1
Huhtinen M, Peippo J, Bredbacka P.Embryo biopsy has been used to detect inherited disorders and to improve the phenotype by analyzing of linkages between marker loci and the desired characteristics. Unfortunately, early procedures required the removal of a large portion (one-half) of the embryo for analysis, and the transfer of bisected equine embryos has not been particularly successful. Recent discovery of the polymerase chain reaction (PCR) has made possible the detection of specific DNA sequences from only a few cells. We investigated whether the removal of a small biopsy would allow for successful PCR and normal embryonic...
Comparison of tracheal aspiration with other tests for diagnosis of Rhodococcus equi pneumonia in foals.
Veterinary microbiology    June 16, 1997   Volume 56, Issue 3-4 335-345 doi: 10.1016/s0378-1135(97)00100-4
Anzai T, Wada R, Nakanishi A, Kamada M, Takai S, Shindo Y, Tsubaki S.The diagnostic value of tracheal aspiration was evaluated through comparison with other diagnostic methods using an experimental model of Rhodococcus equi (R. equi) pneumonia in foals. Pneumonia was induced by spraying of the virulent R. equi strain ATCC 33701 into the trachea of foals. All foals developed fever from 11 to 16 days after bacterial inoculation. One foal was euthanized on day 26 due to its poor prognosis, and other foals euthanized on day 43. During the experiment, some tests for diagnosis of Rhodococcus equi pneumonia such as tracheal aspiration, radiography, serodiagnosis and f...
Demonstration of Borna disease virus (BDV) in specific regions of the brain from horses positive for serum antibodies to BDV but negative for BDV RNA in the blood and internal organs.
Medical microbiology and immunology    June 1, 1997   Volume 186, Issue 1 19-24 doi: 10.1007/s004300050041
Hagiwara K, Momiyama N, Taniyama H, Nakaya T, Tsunoda N, Ishihara C, Ikuta K.Sero- and molecular-epidemiological studies on Borna disease virus (BDV) infection show that BDV RNA is not always detected in the peripheral blood mononuclear cells (PBMCs) from serum anti-BDV antibody-positive individuals such as horses, sheep, cattle, cats, and humans. In this study we demonstrated BDV RNA signals by polymerase chain reaction only in restricted regions of the brain from horses with locomotor disease. Four of six horses examined showed apparently positive reactions for anti-BDV antibodies. Specific regions of the brain of these four horses were positive for BDV RNA but the i...
Prevalence of the virulence-associated gene of Rhodococcus equi in isolates from infected foals.
Journal of clinical microbiology    June 1, 1997   Volume 35, Issue 6 1642-1644 doi: 10.1128/jcm.35.6.1642-1644.1997
Haites RE, Muscatello G, Begg AP, Browning GF.The prevalence of the plasmid-encoded virulence-associated gene (vapA) of Rhodococcus equi, as determined by PCR, was found to be 98% in isolates from 154 foals with pneumonia, confirming the strong association of vapA with virulence. The vapA genes from 60 representative isolates were compared by digestion with the restriction endonuclease HinfI, and no evidence of sequence variation was detected.
Detection of latency-associated transcripts of equid herpesvirus 1 in equine leukocytes but not in trigeminal ganglia.
Journal of virology    May 1, 1997   Volume 71, Issue 5 3437-3443 doi: 10.1128/JVI.71.5.3437-3443.1997
Chesters PM, Allsop R, Purewal A, Edington N.Results from Southern hybridization and PCR amplification experiments using a randomly synthesized reverse transcription-PCR product showed that peripheral blood leukocytes from horses showing no clinical signs of disease expressed a putative latency-associated transcript antisense to and overlapping the 3' end of the equid herpesvirus 1 (EHV-1) immediate-early gene (gene 64). A PCR product derived from this transcript has > or =96% identity with the published EHV-1 sequence. In situ hybridization studies of equine bronchial lymph nodes corroborated these findings and are consistent with re...
Detection of African horse sickness virus in the blood of experimentally infected horses: comparison of virus isolation and a PCR assay.
Research in veterinary science    May 1, 1997   Volume 62, Issue 3 229-232 doi: 10.1016/s0034-5288(97)90195-8
Sailleau C, Moulay S, Cruciere C, Laegreid WW, Zientara S.A reverse transcription-polymerase chain reaction (RT-PCR) assay followed by dot-blot hybridisation was used to detect African horse sickness virus (AHSV); the primers employed amplified the S7 gene that encodes the VP7 protein. The RT-PCR assay was compared with virus isolation for detecting AHSV in blood samples form horses experimentally infected with AHSV-4 and AHSV-9. The influence of sample storage and transportation and the effects of two anticoagulants (EDTA and heparin) were also studied. RT-PCR results were obtained within 48 hours as opposed to a minimum of 15 days for virus isolati...
Equine herpesvirus 4 DNA in trigeminal ganglia of naturally infected horses detected by direct in situ PCR.
The Journal of general virology    May 1, 1997   Volume 78 ( Pt 5) 1109-1114 doi: 10.1099/0022-1317-78-5-1109
Borchers K, Wolfinger U, Lawrenz B, Schellenbach A, Ludwig H.Neuronal and lymphoid tissues of 15 randomly selected horses were analysed post mortem by liquid nested-PCR to study the tropism of equine herpesvirus 4 (EHV-4). In four animals the trigeminal ganglia and in one case the lung were positive. Using a direct in situ PCR the EHV-4 genome was localized in the nuclei of neurons and in the bronchiolar as well as alveolar epithelium of the lung. In none of these tissues could infectious virus or viral antigens be detected. Applying the more sensitive liquid RT-PCR, however, an acute infection was demonstrated in one of the trigeminal ganglia by amplif...
Detection and distribution of equine herpesvirus 2 DNA in the central and peripheral nervous systems of ponies.
The Journal of general virology    May 1, 1997   Volume 78 ( Pt 5) 1115-1118 doi: 10.1099/0022-1317-78-5-1115
Rizvi SM, Slater JD, Wolfinger U, Borchers K, Field HJ, Slade AJ.The distribution of equine herpesvirus 2 (EHV-2) DNA within neurological and lymphoid tissues from 12 EHV-2 seropositive Welsh mountain ponies was determined by PCR. The lymphoid sites sampled in this study were almost universally PCR positive, thus confirming the existing virus co-cultivation data which suggest that the lymph nodes draining the respiratory tract are the main reservoirs of EHV-2 DNA. In addition, EHV-2 DNA was also detected, albeit with lower frequency, within both the peripheral and central nervous systems (PNS and CNS) of these animals. Of the CNS sites sampled 11% were PCR-...
Epidemiologic aspects of Taylorella equigenitalis.
Theriogenology    April 15, 1997   Volume 47, Issue 6 1169-1177 doi: 10.1016/s0093-691x(97)00097-6
Parlevliet JM, Bleumink-Pluym NM, Houwers DJ, Remmen JL, Sluijter FJ, Colenbrander B.Contagious equine metritis (CEM) is a sexually transmissible disease in mares. Although the disease is commonly diagnosed by culturing the causative bacterium Taylorella equigenitalis (T. equigenitalis) . false negative results do occur. A recently developed Polymerase Chain Reaction (PCR) assay, however, appeared to be much more sensitive, with initial results indicating an unexpected high incidence of the agent in selected horses. In this study, samples from 107 randomly selected mares with no clinical signs of CEM submitted for conventional culture were all negative for T. equigenitalis . b...
An investigation of the prevalence of the toxigenic types of Clostridium perfringens in horses with anterior enteritis: preliminary results.
Anaerobe    April 1, 1997   Volume 3, Issue 2-3 121-125 doi: 10.1006/anae.1997.0087
Griffiths NJ, Walton JR, Edwards GB.Equine anterior enteritis is an acute syndrome with unknown aetiology, although salmonellosis and infection with Clostridium perfringens have both been suggested as potential causes. The main aim of this preliminary study was to compare the prevalence of toxigenic types of C. perfringens in clinically healthy horses and in horses with anterior enteritis. From horses admitted with colic at Phillip Leverhulme Large Animal Hospital in 1995-1996, samples of gastric reflux, small intestinal contents and faeces were taken for isolation of C. perfringens. Five of those horses were admitted as anterio...
Characterization of the Lancefield group C streptococcus 16S-23S RNA gene intergenic spacer and its potential for identification and sub-specific typing.
Epidemiology and infection    April 1, 1997   Volume 118, Issue 2 125-135 doi: 10.1017/s0950268896007285
Chanter N, Collin N, Holmes N, Binns M, Mumford J.The 16S-23S RNA gene intergenic spacers of isolates of Streptococcus equi (n = 5), S. zooepidemicus (n = 5), S. equisimilis (n = 3) and S. dysgalactiae (n = 2) were sequenced and compared. There were distinct regions within the spacer, arranged in the order 1-9 for all S. equi and one S. zooepidemicus isolate and 1,2 and 4-9 for the remaining isolates. Region 4 was identical to the tRNA(ala) gene found in the 16S-23S intergenic spacers of other streptococci. Regions 1, 5, 6 and 7 had distinct variations, each conserved in different isolates. However, amongst the intergenic spacers there were d...
Nested polymerase chain reaction for detection of Ehrlichia risticii genomic DNA in infected horses.
Veterinary parasitology    March 1, 1997   Volume 68, Issue 4 367-373 doi: 10.1016/s0304-4017(96)01083-7
Barlough JE, Rikihisa Y, Madigan JE.A nested polymerase chain reaction was developed for amplifying a 529-bp segment of the 16S ribosomal RNA gene of Ehrlichia risticii from equine buffy coat cells. Confirmation of identity of the amplified bands was accomplished by Southern hybridization and DNA sequencing. The study indicated a detection limit of > 10 copies of the target gene, and specificity for E. risticii as based on a panel of test rickettsiae. Ticks (Ixodes pacificus) collected in an area of northern California enzootic for equine monocytic ehrlichiosis were found to be negative for E. risticii DNA.
Fatal encephalitis due to novel paramyxovirus transmitted from horses.
Lancet (London, England)    January 11, 1997   Volume 349, Issue 9045 93-95 doi: 10.1016/s0140-6736(96)06162-4
O'Sullivan JD, Allworth AM, Paterson DL, Snow TM, Boots R, Gleeson LJ, Gould AR, Hyatt AD, Bradfield J.In September, 1994, an outbreak of severe respiratory disease affected 18 horses, their trainer, and a stablehand in Queensland, Australia. Fourteen horses and one human being died. A novel virus was isolated from those affected and named equine morbillivirus (EMV). We report a case of encephalitis caused by this virus. Results: A 35-year-old man from Queensland had a brief aseptic meningitic illness in August, 1994, shortly after caring for two horses that died from EMV infection and then assisting at their necropsies. He then suffered severe encephalitis 13 months later, characterised by unc...
PCR for detection of Streptococcus equi.
Advances in experimental medicine and biology    January 1, 1997   Volume 418 359-361 doi: 10.1007/978-1-4899-1825-3_86
Artiushin S, Timoney JF.No abstract available
Distribution and relevance of equine herpesvirus type 2 (EHV-2) infections.
Archives of virology    January 1, 1997   Volume 142, Issue 5 917-928 doi: 10.1007/s007050050128
Borchers K, Wolfinger U, Goltz M, Broll H, Ludwig H.Equine herpesvirus type 2 (EHV-2) is a slow-growing, cytopathogenic gammaherpesvirus, which is suggested to be ubiquitous in the equine population. However, its precise role as a pathogen and its tissue tropism remains uncertain. To estimate the prevalence of EHV-2 in Germany and to investigate the possible pathogenicity of the virus, peripheral blood leucocytes (PBL) from 172 horses were examined for EHV-2 DNA by a sensitive and specific nested PCR based on the EcoRI-N genomic fragment and by classical cocultivation. PBL samples from 51% of the horses were positive by PCR and virus was isolat...
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