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Topic:Evolutionary Biology

Evolutionary biology and horses focus on the study of the evolutionary processes that have shaped the development, adaptation, and diversification of the Equus genus. This field examines the genetic, morphological, and ecological changes that have occurred over millions of years, leading to the modern horse. Researchers explore the transition from small, multi-toed ancestors to the large, single-toed horses of today, analyzing fossil records, genetic data, and environmental factors that influenced these changes. This page compiles peer-reviewed research studies and scholarly articles that investigate the evolutionary history, genetic adaptations, and ecological interactions of horses, providing insights into their development and survival strategies throughout history.
Society of Vertebrate Paleontology meeting. Timing complicates history of horses.
Science (New York, N.Y.)    November 30, 2004   Volume 306, Issue 5701 1467 doi: 10.1126/science.306.5701.1467a
Stokstad E.No abstract available
2000 Year-old ancient equids: an ancient-DNA lesson from pompeii remains.
Journal of experimental zoology. Part B, Molecular and developmental evolution    October 7, 2004   Volume 302, Issue 6 550-556 doi: 10.1002/jez.b.21017
Di Bernardo G, Del Gaudio S, Galderisi U, Cipollaro M.Ancient DNA extracted from 2000 year-old equine bones was examined in order to amplify mitochondrial and nuclear DNA fragments. A specific equine satellite-type sequence representing 3.7%-11% of the entire equine genome, proved to be a suitable target to address the question of the presence of aDNA in ancient bones. The PCR strategy designed to investigate this specific target also allowed us to calculate the molecular weight of amplifiable DNA fragments. Sequencing of a 370 bp DNA fragment of mitochondrial control region allowed the comparison of ancient DNA sequences with those of modern hor...
[The domestic animal in heraldry; Part 3, the horse].
Historia medicinae veterinariae    September 24, 2004   Volume 28, Issue 3 84-88 
Mache C.The author presents in her paper the historical background of the heraldic. In the coming four papers she will discuss the use and position of different domestic animals in heraldic.
Skeletal atavism in a miniature horse. Tyson R, Graham JP, Colahan PT, Berry CR.An 8-month-old miniature horse filly was presented for evaluation of severe rotational and angular limb deformities of the thoracic and pelvic limbs. On radiographic examination, complete ulnas and fibulas were identified. These findings are consistent with a condition previously described as a form of atavism. The term atavism is used to describe the reappearance of a trait or character that was seen in all earlier evolutionary specimens of a particular species, but has not been seen in recent ancestors. The atavistic traits of complete ulnas and fibulas have previously been described in Wels...
The complete map of the Ig heavy chain constant gene region reveals evidence for seven IgG isotypes and for IgD in the horse.
Journal of immunology (Baltimore, Md. : 1950)    August 24, 2004   Volume 173, Issue 5 3230-3242 doi: 10.4049/jimmunol.173.5.3230
Wagner B, Miller DC, Lear TL, Antczak DF.This report contains the first map of the complete Ig H chain constant (IGHC) gene region of the horse (Equus caballus), represented by 34 overlapping clones from a new bacterial artificial chromosome library. The different bacterial artificial chromosome inserts containing IGHC genes were identified and arranged by hybridization using overgo probes specific for individual equine IGHC genes. The analysis of these IGHC clones identified two previously undetected IGHC genes of the horse. The newly found IGHG7 gene, which has a high homology to the equine IGHG4 gene, is located between the IGHG3 ...
Estimate of size and total number of neurons in superior cervical ganglion of rat, capybara and horse.
Anatomy and embryology    July 3, 2004   Volume 208, Issue 5 367-380 doi: 10.1007/s00429-004-0407-0
Ribeiro AA, Davis C, Gabella G.The superior (cranial) cervical ganglion was investigated by light microscopy in adult rats, capybaras (Hydrochaeris hydrochaeris) and horses. The ganglia were vascularly perfused, embedded in resin and cut into semi-thin sections. An unbiased stereological procedure (disector method) was used to estimate ganglion neuron size, total number of ganglion neurons, neuronal density. The volume of the ganglion was 0.5 mm3 in rats, 226 mm3 in capybaras and 412 mm3 in horses. The total number of neurons per ganglion was 18,800, 1,520,000 and 3,390,000 and the number of neurons per cubic millimetre was...
Isolation from the horse genome of a new DNA transposon belonging to the Tigger family.
Mammalian genome : official journal of the International Mammalian Genome Society    June 1, 2004   Volume 15, Issue 5 399-403 doi: 10.1007/s00335-004-3040-6
Paulis M, Moralli D, Bensi M, De Carli L, Raimondi E.Tigger elements are human DNA transposons homologous to the pogo element of Drosophila melanogaster. They contain an open reading frame for a transposase very similar to the major mammalian centromere protein CENP-B. We found in the horse genome a DNA element ( Ecatig3) sharing 88% homology with human Tigger3. The presence of Tigger elements in the horse genome confirms previous data that date these elements before the divergence between Perissodactyla and Primates (80-90 Myr ago). Copy number evaluation indicates that the horse element is much more abundant than its human counterpart. Souther...
Absence of the functional Myosin heavy chain 2b isoform in equine skeletal muscles.
Zoological science    June 1, 2004   Volume 21, Issue 5 589-596 doi: 10.2108/zsj.21.589
Chikuni K, Muroya S, Nakajima I.Nucleotide sequences which included the full coding region for three types of myosin heavy chain (MyHC) isoforms were determined from equine skeletal muscles. The deduced amino acid sequences were 1937, 1938, and 1935 residues for the MyHC-2a, -2x, and -slow, respectively. No MyHC-2b isoform was amplified from the equine muscle cDNA except for one pseudogene fragment. One nucleotide was inserted in the coding region of the equine pseudogene product, a minute amount of which was expressed in the skeletal muscle. The 596 bp sequence of the equine MyHC pseudogene was categorized into the MyHC-2b ...
Review of horses in Paleoindian sites of the Americas. Pichardo M.Analysis of the morphological characters in North and South American horses present during Paleoindian time indicates that at least eight Equus ecospecies occurred in North America. In South America, Equus had radiated into four ecospecies, Hippidion had one, and Onohippidium had three geographically separate ecospecies. These species are found in archeological deposits ranging from ca. 13,000 to 8,000 yr B.P., in tropical habitats as well as in the high Andean and Patagonian colder ecotopes.
Isolation of Y chromosome-specific microsatellites in the horse and cross-species amplification in the genus Equus.
The Journal of heredity    April 10, 2004   Volume 95, Issue 2 158-164 doi: 10.1093/jhered/esh020
Wallner B, Piumi F, Brem G, Müller M, Achmann R.Y chromosome polymorphisms such as microsatellites or single nucleotide polymorphisms represent a paternal counterpart to mitochondrial DNA (mtDNA) for evolutionary and phylogeographic studies. The use of Y chromosome haplotyping in natural populations of species other than humans is still hindered by the lack of sequence information necessary for polymorphism screening. Here we used representational difference analysis (RDA) followed by a screen of a bacterial artificial chromosome (BAC) library for repetitive sequences to obtain polymorphic Y-chromosomal markers. The procedure was performed ...
[Genealogic analysis of hereditary components of a metapopulation of Przhevalsky horse].
Genetika    April 7, 2004   Volume 40, Issue 2 261-266 
Belousova IP, Orlov VN, Kudriavtsev IV.The current condition of the megapopulation of the Przhevalsky horse was assessed using genetic indices of biological diversity of species and genealogical analysis and taking into account both nuclear and non-nuclear (mitochondrial), maternally inherited components of hereditary information.
Cloning and comparative analysis of the bovine, porcine, and equine sex chromosome genes ZFX and ZFY.
Genome    April 3, 2004   Volume 47, Issue 1 74-83 doi: 10.1139/g03-099
Poloumienko A.A growing body of evidence suggests the involvement of sex chromosome genes in mammalian development. We report the cloning and characterization of the complete coding regions of the bovine Y chromosome ZFY and X chromosome ZFX genes, and partial coding regions of porcine and equine ZFX and ZFY genes. Bovine ZFY and ZFX are highly similar to each other and to ZFX and ZFY from other species. While bovine and human ZFY proteins are both 801 amino acids long, bovine ZFX is 5 amino acids shorter than human ZFX. Like in humans, both bovine ZFY and ZFX contain 13 zinc finger motifs and belong to the...
Genetic characterization of Pompeii and Herculaneum Equidae buried by Vesuvius in 79 AD.
Journal of cellular physiology    March 25, 2004   Volume 199, Issue 2 200-205 doi: 10.1002/jcp.10461
Di Bernardo G, Galderisi U, Del Gaudio S, D'Aniello A, Lanave C, De Robertis MT, Cascino A, Cipollaro M.DNA extracted from the skeletons of five equids discovered in a Pompeii stable and of a horse found in Herculaneum was investigated. Amino acid racemization level was consistent with the presence of DNA. Post-mortem base modifications were excluded by sequencing a 146 bp fragment of the 16S rRNA mitochondrial gene. Sequencing of a 370 bp fragment of mitochondrial (mt)DNA control region allowed the construction of a phylogenetic tree that, along with sequencing of nuclear genes (epsilon globin, gamma interferon, and p53) fragments, gave us the possibility to address some questions puzzling arch...
Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States.
Virus research    March 17, 2004   Volume 100, Issue 2 159-164 doi: 10.1016/j.virusres.2003.11.019
Lai AC, Rogers KM, Glaser A, Tudor L, Chambers T.Phylogenetic and antigenic analyses indicate that recent circulating equine-2 influenza viruses in the United States have been alternating between two genetic and antigenic distinct lineages since 1996. The evolution rates for these two lineages, the Kentucky and the Florida lineage, are very similar. For the earlier isolates in the Kentucky lineage, there are multiple and sequential nonsynonymous substitutions at antigenic sites B and D. However, there are no changes at any of these antigenic sites for KY98 and OK00. In the Florida lineage, except for NY99 with one amino acid substitution at ...
Limited number of patrilines in horse domestication.
Nature genetics    March 14, 2004   Volume 36, Issue 4 335-336 doi: 10.1038/ng1326
Lindgren G, Backström N, Swinburne J, Hellborg L, Einarsson A, Sandberg K, Cothran G, Vilà C, Binns M, Ellegren H.Genetic studies using mitochondrial DNA (mtDNA) have identified extensive matrilinear diversity among domestic horses. Here, we show that this high degree of polymorphism is not matched by a corresponding patrilinear diversity of the male-specific Y chromosome. In fact, a screening for single-nucleotide polymorphisms (SNPs) in 14.3 kb of noncoding Y chromosome sequence among 52 male horses of 15 different breeds did not identify a single segregation site. These observations are consistent with a strong sex-bias in the domestication process, with few stallions contributing genetically to the do...
Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology    February 27, 2004   Volume 12, Issue 1 65-76 doi: 10.1023/b:chro.0000009298.02689.8a
Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA.We have made a complete set of painting probes for the domestic horse by degenerate oligonucleotide-primed PCR amplification of flow-sorted horse chromosomes. The horse probes, together with a full set of those available for human, were hybridized onto metaphase chromosomes of human, horse and mule. Based on the hybridization results, we have generated genome-wide comparative chromosome maps involving the domestic horse, donkey and human. These maps define the overall distribution and boundaries of evolutionarily conserved chromosomal segments in the three genomes. Our results shed further lig...
Karyotypic relationships of horses and zebras: results of cross-species chromosome painting.
Cytogenetic and genome research    February 19, 2004   Volume 102, Issue 1-4 235-243 doi: 10.1159/000075755
Yang F, Fu B, O'Brien PC, Robinson TJ, Ryder OA, Ferguson-Smith MA.Complete sets of chromosome-specific painting probes, derived from flow-sorted chromosomes of human (HSA), Equus caballus (ECA) and Equus burchelli (EBU) were used to delineate conserved chromosomal segments between human and Equus burchelli, and among four equid species, E. przewalskii (EPR), E. caballus, E. burchelli and E. zebra hartmannae (EZH) by cross-species chromosome painting. Genome-wide comparative maps between these species have been established. Twenty-two human autosomal probes revealed 48 conserved segments in E. burchelli. The adjacent segment combinations HSA3/21, 7/16p, 16q/1...
Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus.
Cytogenetic and genome research    February 19, 2004   Volume 102, Issue 1-4 217-221 doi: 10.1159/000075752
Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E.The genus Equus is unusual in that five of the ten extant species have documented centric fission (Robertsonian translocation) polymorphisms within their populations, namely E. hemionus onager, E. hemionus kulan, E. kiang, E. africanus somaliensis, and E. quagga burchelli. Here we report evidence that the polymorphism involves the same homologous chromosome segments in each species, and that these chromosome segments have homology to human chromosome 4 (HSA4). Bacterial artificial chromosome clones containing equine genes SMARCA5 (ECA2q21 homologue to HSA4q31. 21) and UCHL1 (ECA3q22 homologue ...
FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii).
Cytogenetic and genome research    February 19, 2004   Volume 102, Issue 1-4 222-225 doi: 10.1159/000075753
Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E.Przewalski's wild horse (E. przewalskii, EPR) has a diploid chromosome number of 2n = 66 while the domestic horse (E. caballus, ECA) has a diploid chromosome number of 2n = 64. Discussions about their phylogenetic relationship and taxonomic classification have hinged on comparisons of their skeletal morphology, protein and mitochondrial DNA similarities, their ability to produce fertile hybrid offspring, and on comparison of their chromosome morphology and banding patterns. Previous studies of GTG-banded karyotypes suggested that the chromosomes of both equids were homologous and the differenc...
Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional.
Genome research    February 12, 2004   Volume 14, Issue 3 367-372 doi: 10.1101/gr.1961204
Frazer KA, Tao H, Osoegawa K, de Jong PJ, Chen X, Doherty MF, Cox DR.Cross-species DNA sequence comparison is a fundamental method for identifying biologically important elements, because functional sequences are evolutionarily conserved, wheres nonfunctional sequences drift. A recent genome-wide comparison of human and mouse DNA discovered over 200,000 conserved noncoding sequences with unknown function. Multispecies DNA comparison has been proposed as a method to prioritize these conserved noncoding sequences for functional analysis based on the hypothesis that elements present in many species are more likely to be functional than elements present in limited ...
A 1.4-Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues.
Genomics    January 7, 2004   Volume 83, Issue 2 203-215 doi: 10.1016/j.ygeno.2003.07.002
Lee EJ, Raudsepp T, Kata SR, Adelson D, Womack JE, Skow LC, Chowdhary BP.Comparative genomics has served as a backbone for the rapid development of gene maps in domesticated animals. The integration of this approach with radiation hybrid (RH) analysis provides one of the most direct ways to obtain physically ordered comparative maps across evolutionarily diverged species. We herein report the development of a detailed RH and comparative map for horse chromosome 17 (ECA17). With markers distributed at an average interval of every 1.4 Mb, the map is currently the most informative among the equine chromosomes. It comprises 75 markers (56 genes and 19 microsatellites),...
Fixed nucleotide differences on the Y chromosome indicate clear divergence between Equus przewalskii and Equus caballus.
Animal genetics    December 23, 2003   Volume 34, Issue 6 453-456 doi: 10.1046/j.0268-9146.2003.01044.x
Wallner B, Brem G, Müller M, Achmann R.The phylogenetic relationship between Equus przewalskii and E. caballus is often a matter of debate. Although these taxa have different chromosome numbers, they do not form monophyletic clades in a phylogenetic tree based on mtDNA sequences. Here we report sequence variation from five newly identified Y chromosome regions of the horse. Two fixed nucleotide differences on the Y chromosome clearly display Przewalski's horse and domestic horse as sister taxa. At both positions the Przewalski's horse haplotype shows the ancestral state, in common with the members of the zebra/ass lineage. We discu...
Drug resistance in nematodes: a paper tiger or a real problem?
Current opinion in infectious diseases    November 19, 2003   Volume 16, Issue 6 559-564 doi: 10.1097/00001432-200312000-00008
Kaminsky R.The purpose of this review is to illustrate where drug resistance in parasitic nematodes has become a major problem. The mechanisms underlying anthelmintic resistance, the possible reasons for the development of anthelmintic resistance, and recommendations to minimize the further development of anthelmintic resistance in humans will be addressed. Results: Resistance has developed to all drugs of the few anthelmintic classes currently available. Drug resistance has become a major threat to sheep production in Australia, New Zealand, Great Britain and South Africa. In addition, the treatment of ...
Post-entry restriction of retroviral infections.
AIDS reviews    November 6, 2003   Volume 5, Issue 3 156-164 
Towers GJ, Goff SP.Pathogenic retroviruses have driven the evolution of several dominant-acting mechanisms able to block infection and protect the host. These are exemplified by the mouse gene Fv1, which encodes a Gag-like protein able to protect against murine leukemia virus (MLV) infection. The block is saturable, occurs after reverse transcription and is directed against the viral capsid gene. Several other mammalian species are also able to block MLV infection with the same capsid specificity. A human gene with this activity has been named Ref1. Recently, primates have been shown to restrict a variety of ret...
Subpopulations of equine infectious anemia virus Rev coexist in vivo and differ in phenotype.
Journal of virology    October 29, 2003   Volume 77, Issue 22 12122-12131 doi: 10.1128/jvi.77.22.12122-12131.2003
Baccam P, Thompson RJ, Li Y, Sparks WO, Belshan M, Dorman KS, Wannemuehler Y, Oaks JL, Cornette JL, Carpenter S.Lentiviruses exist in vivo as a population of related, nonidentical genotypes, commonly referred to as quasispecies. The quasispecies structure is characteristic of complex adaptive systems and contributes to the high rate of evolution in lentiviruses that confounds efforts to develop effective vaccines and antiviral therapies. Here, we describe analyses of genetic data from longitudinal studies of genetic variation in a lentivirus regulatory protein, Rev, over the course of disease in ponies experimentally infected with equine infectious anemia virus. As observed with other lentivirus data, t...
Microsatellite variation in Japanese and Asian horses and their phylogenetic relationship using a European horse outgroup.
The Journal of heredity    October 15, 2003   Volume 94, Issue 5 374-380 doi: 10.1093/jhered/esg079
Tozaki T, Takezaki N, Hasegawa T, Ishida N, Kurosawa M, Tomita M, Saitou N, Mukoyama H.The genetic relationships of seven Japanese and four mainland-Asian horse populations, as well as two European horse populations, were estimated using data for 20 microsatellite loci. Mongolian horses showed the highest average heterozygosities (0.75-0.77) in all populations. Phylogenetic analysis showed the existence of three distinct clusters supported by high bootstrap values: the European cluster (Anglo-Arab and thoroughbreds), the Hokkaido-Kiso cluster, and the Mongolian cluster. The relationships of these clusters were consistent with their geographical distributions. Basing our assumpti...
[Phylogeny, form and function of canine teeth in the horse].
Anatomia, histologia, embryologia    August 16, 2003   Volume 32, Issue 4 212-217 doi: 10.1046/j.1439-0264.2003.00461.x
Vollmerhaus B, Roos H, Gerhards H, Knospe C.The canine teeth of the horse developed phylogenically from the simple, pointed, short-rooted tooth form of the leaf eating, in pairs living, Eocene horse Hyracotherium and served up to the Oligocene as a means of defense (self preservation). In the Miocene the living conditions of the Merychippus changed and they took to eating grass and adopted as a new behavior the life in a herd. The canine teeth possibly played an important role in fights for social ranking; they changed from a crown form to knife-like shape. In the Pliohippus the canine tooth usually remained in male horses and since the...
Differential mesowear in occluding upper and lower molars: opening mesowear analysis for lower molars and premolars in hypsodont horses.
Journal of morphology    August 9, 2003   Volume 258, Issue 1 67-83 doi: 10.1002/jmor.10125
Kaiser TM, Fortelius M.A new approach of reconstructing ungulate diet, the mesowear method, was recently introduced by Fortelius and Solounias ([2000] Am Mus Novitat 3301:1-36). Mesowear is based on facet development on the occlusal surfaces of the teeth. Restricting mesowear investigation to maxillary cheek teeth would allow mesowear investigation only in assemblages of large numbers of individuals and therefore would generally restrict this method to relatively few assemblages of recent and fossil ungulates. Most of the fossil, subfossil, and recent ungulate osteological assemblages that may be assigned to a singl...
[Histomorphometric study of bone microstructure of primates and domestic animal with the goal of species identification with reference to the effects of domestication]. Dittmann K.Functional bone microstructure of long limb bones is a function of species-specific biomechanical properties such as locomotion and weight. Histomorphometry and statistics were used to identify various primate species (Hylobates moloch, Pongo satyrus borneensis, Pan tr. troglodytes, Gorilla g. gorilla, Homo sapiens), equid species (Equus caballus, Equus asinus, Equus mulus, Equus hemionus kulan, Equus ferus przewalskii) and also extinct horses e.g. iron age, medieval and neolithic forms on the microstructural level. Furthermore, bones from domesticated cattle, their Neolithic forms, pigs, shee...
Contribution to the history of the horse domestication and breeding in the Ukraine.
Historia medicinae veterinariae    July 4, 2003   Volume 28, Issue 2 41-46 
Rudik SK.The Ukraine is one of the centers of domestication of animals. Many archaeological excavations and chronicles evidence this. The wild horse tarpan was domesticated in Ukraine. There were huge herds of tarpans lived in Ukraine. Tarpans were distinguished for their speed, quality of their hooves (it was very important for the shoeless horses). The last tarpan mare was killed at Ukrainian territory at 1898. In contradistinction to the Eq. Prezewalskii the tarpan was the direct ancestor of the European domesticated horse breeds.
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