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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Two-wave behavior under various conditions of transition area from cancellous bone to cortical bone.
Ultrasonics    November 12, 2013   Volume 54, Issue 5 1245-1250 doi: 10.1016/j.ultras.2013.10.016
Nagatani Y, Mizuno K, Matsukawa M.The two-wave phenomenon, the wave separation of a single ultrasonic pulse in cancellous bone, is expected to be a useful tool for the diagnosis of osteoporosis. However, because actual bone has a complicated structure, precise studies on the effect of transition conditions between cortical and cancellous parts are required. This study investigated how the transition condition influenced the two-wave generation using three-dimensional X-ray CT images of an equine radius and a three-dimensional simulation technique. As a result, any changes in the boundary between cortical part and trabecular pa...
[Sugar formulations influence the immune system in foals].
Tijdschrift voor diergeneeskunde    November 10, 2013   Volume 138, Issue 10 36-37 
Haneveld JK.No abstract available
Prevalence of asinine herpesvirus type 5 (AsHV-5) infection in clinically normal Lipizzaner horses.
Veterinary journal (London, England : 1997)    November 9, 2013   Volume 200, Issue 1 200-203 doi: 10.1016/j.tvjl.2013.10.035
Rushton JO, Kolodziejek J, Nell B, Nowotny N.The aim of this study was to assess the extent of asinine herpesvirus (AsHV) type 5 infection in 'closed' populations of clinically normal Lipizzaner horses. Peripheral blood mononuclear cells plus nasal and conjunctival swabs were obtained on four occasions over an 18 month period from 266 animals as part of a health surveillance programme. Sequence analysis of samples that were positive by nested consensus herpesvirus PCR but negative using quantified equid herpesvirus (EHV) type 2 and 5 PCR, revealed a total of 51 samples from 39 horses positive for AsHV-5. No statistically significant asso...
Breed differences in insulin sensitivity and insulinemic responses to oral glucose in horses and ponies of moderate body condition score.
Domestic animal endocrinology    November 9, 2013   Volume 47 101-107 doi: 10.1016/j.domaniend.2013.11.001
Bamford NJ, Potter SJ, Harris PA, Bailey SR.Breed-related differences may occur in the innate insulin sensitivity (SI) of horses and ponies, an important factor believed to be associated with the risk of laminitis. The aim of this study was to measure the glucose and insulin responses of different breeds of horses and ponies in moderate body condition to a glucose-containing meal and to compare these responses with the indices of SI as determined by a frequently sampled intravenous glucose tolerance test (FSIGT). Eight Standardbred horses, 8 mixed-breed ponies, and 7 Andalusian-cross horses with a mean ± SEM BCS 5.0 ± 0.3 of 9 were us...
Evidence of positive selection for a glycogen synthase (GYS1) mutation in domestic horse populations.
The Journal of heredity    November 8, 2013   Volume 105, Issue 2 163-172 doi: 10.1093/jhered/est075
McCoy AM, Schaefer R, Petersen JL, Morrell PL, Slamka MA, Mickelson JR, Valberg SJ, McCue ME.A dominantly inherited gain-of-function mutation in the glycogen synthase (GYS1) gene, resulting in excess skeletal muscle glycogen, has been identified in more than 30 horse breeds. This mutation is associated with the disease Equine Polysaccharide Storage Myopathy Type 1, yet persists at high frequency in some breeds. Under historical conditions of daily work and limited feed, excess muscle glycogen may have been advantageous, driving the increase in frequency of this allele. Fine-scale DNA sequencing in 80 horses and genotype assays in 279 horses revealed a paucity of haplotypes carrying th...
The equine CD1 gene family is the largest and most diverse yet identified.
Immunogenetics    November 7, 2013   Volume 66, Issue 1 33-42 doi: 10.1007/s00251-013-0741-6
Dossa RG, Alperin DC, Hines MT, Hines SA.The CD1 family is a group of non-polymorphic MHC class I-like molecules that present lipid-based antigens to T cells. Previous work in our laboratory demonstrated that cytotoxic T lymphocytes from immune adult horses recognize lipids from the cell wall of an important equine pathogen, Rhodococcus equi. These findings suggest an important role for the equine CD1 antigen presentation system in protective immune responses to microbial pathogens in the horse. In this study, we characterized and mapped the equine CD1 gene cluster. The equine genome was found to contain 13 complete CD1 genes; seven ...
World congress looks at horses inside and out.
The Veterinary record    November 5, 2013   Volume 173, Issue 17 412-413 doi: 10.1136/vr.f6368
Lean M.No abstract available
Culture conditions for equine bone marrow mesenchymal stem cells and expression of key transcription factors during their differentiation into osteoblasts.
Journal of animal science and biotechnology    October 29, 2013   Volume 4, Issue 1 40 doi: 10.1186/2049-1891-4-40
Glynn ER, Londono AS, Zinn SA, Hoagland TA, Govoni KE.The use of equine bone marrow mesenchymal stem cells (BMSC) is a novel method to improve fracture healing in horses. However, additional research is needed to identify optimal culture conditions and to determine the mechanisms involved in regulating BMSC differentiation into osteoblasts. The objectives of the experiments were to determine: 1) if autologous or commercial serum is better for proliferation and differentiation of equine BMSC into osteoblasts, and 2) the expression of key transcription factors during the differentiation of equine BMSC into osteoblasts. Equine BMSC were isolated fro...
Validation of imputation between equine genotyping arrays.
Animal genetics    October 27, 2013   Volume 45, Issue 1 153 doi: 10.1111/age.12093
McCoy AM, McCue ME.No abstract available
Quantitative real-time PCR for detection of neurotoxin genes of Clostridium botulinum types A, B and C in equine samples.
Veterinary journal (London, England : 1997)    October 26, 2013   Volume 199, Issue 1 157-161 doi: 10.1016/j.tvjl.2013.10.023
Johnson AL, McAdams-Gallagher SC, Sweeney RW.Botulism in horses in the USA is attributed to Clostridium botulinum types A, B or C. In this study, a duplex quantitative real-time PCR (qPCR) for detection of the neurotoxin genes of C. botulinum types A and B, and a singleplex qPCR for detection of the neurotoxin gene of C. botulinum type C, were optimized and validated for equine gastrointestinal, faecal and feed samples. The performance of these assays was evaluated and compared to the standard mouse bioassay (MBA) using 148 well-characterized samples, most of which were acquired from a repository of veterinary diagnostic samples from cas...
Identification of a core bacterial community within the large intestine of the horse.
PloS one    October 24, 2013   Volume 8, Issue 10 e77660 doi: 10.1371/journal.pone.0077660
Dougal K, de la Fuente G, Harris PA, Girdwood SE, Pinloche E, Newbold CJ.The horse has a rich and complex microbial community within its gastrointestinal tract that plays a central role in both health and disease. The horse receives much of its dietary energy through microbial hydrolysis and fermentation of fiber predominantly in the large intestine/hindgut. The presence of a possible core bacterial community in the equine large intestine was investigated in this study. Samples were taken from the terminal ileum and 7 regions of the large intestine from ten animals, DNA extracted and the V1-V2 regions of 16SrDNA 454-pyrosequenced. A specific group of OTUs clustered...
The molecular identification of Streptococcus equi subsp. equi strains isolated within New Zealand.
New Zealand veterinary journal    October 24, 2013   Volume 62, Issue 2 63-67 doi: 10.1080/00480169.2013.841536
Patty OA, Cursons RT.To identify Streptococcus equi subsp. equi (S. equi) by PCR analysis and obtain isolates by culture, in order to investigate the strains of S. equi infecting horses within New Zealand. Methods: A diagnostic PCR, based on the amplification of the seeI gene for S. equi, was used on 168 samples submitted from horses with and without clinical signs of strangles. Samples were also processed and cultured on selective media for the isolation of β-haemolytic colonies. In addition, the hypervariable region of the seM gene of S. equi was amplified and then sequenced for strain typing purposes. Results:...
Genetic diversity and bottleneck studies in endangered Bhutia and Manipuri pony breeds.
Molecular biology reports    October 23, 2013   Volume 40, Issue 12 6935-6943 doi: 10.1007/s11033-013-2813-y
Gupta AK, Chauhan M, Bhardwaj A.For studying the genetic diversity and bottleneck problem in Bhutia and Manipuri pony breeds of India, we analysed DNA samples of 34 Bhutia and 50 Manipuri, true to breed, ponies using 47 polymorphic microsatellite markers. All the microsatellites were observed to be highly polymorphic in nature in both Bhutia and Manipuri breeds with mean no. of alleles as 8.702 ± 0.0493 and 8.416 ± 0.0548 respectively. Genetic diversity values in terms of heterozygosity values within individual breeds were also high with very low inbreeding (Fis 0.102 and 0.055 in Bhutia and Manipuri ponies, respective...
S100A7 in the Fallopian tube: a comparative study.
Zygote (Cambridge, England)    October 23, 2013   Volume 23, Issue 2 229-236 doi: 10.1017/S0967199413000464
Teijeiro JM, Marini PE.The oviduct is a dynamic organ in which final gamete maturation, fertilization and early embryo development take place. It is considered to be a sterile site; however the mechanism for sterility maintenance is still unknown. S100A7 is an anti-microbial peptide that has been reported in human reproductive tissues such as prostate, testicle, ovary, normal cervical epithelium and sperm. The current work reports the presence of S100A7 in the Fallopian tube and its localization at the apical surface of epithelial cells. For comparison, porcine S100A7 was used for antibody development and search for...
Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse.
PloS one    October 22, 2013   Volume 8, Issue 10 e78280 doi: 10.1371/journal.pone.0078280
Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, Archer S, Sandmeyer L, Ludwig A, Foerster D, Pruvost M, Reissmann M, Bortfeldt R, Adelson DL....Leopard complex spotting is a group of white spotting patterns in horses caused by an incompletely dominant gene (LP) where homozygotes (LP/LP) are also affected with congenital stationary night blindness. Previous studies implicated Transient Receptor Potential Cation Channel, Subfamily M, Member 1 (TRPM1) as the best candidate gene for both CSNB and LP. RNA-Seq data pinpointed a 1378 bp insertion in intron 1 of TRPM1 as the potential cause. This insertion, a long terminal repeat (LTR) of an endogenous retrovirus, was completely associated with LP, testing 511 horses (χ(2)=1022.00, p<<...
Chronic progressive lymphedema in draft horses.
The Veterinary clinics of North America. Equine practice    October 19, 2013   Volume 29, Issue 3 589-605 doi: 10.1016/j.cveq.2013.08.007
Affolter VK.Chronic progressive lymphedema is a disorder of many draft horse breeds that presents with progressive swelling of the distal portions of the legs. This is associated with scaling, marked dermal fibrosis, and the development of skin folds and nodules. There seems to be a genetic predisposition to altered elastin metabolism and impaired function of the lymphatic system in the distal extremities. Management is palliative and involves keeping the feathers clipped short, treating secondary infections, daily exercise and skin care, hydrotherapy, manual lymph drainage and compression bandaging.
Equine melanocytic tumors.
The Veterinary clinics of North America. Equine practice    October 18, 2013   Volume 29, Issue 3 673-687 doi: 10.1016/j.cveq.2013.08.008
Phillips JC, Lembcke LM.Melanomas are among the most common skin tumors in horses, with prevalence rates reaching as high as 80% in adult gray horses. Most melanocytic tumors are benign at initial presentation; however, if left untreated, up to two-thirds can progress to overt malignant behavior. Standard local treatment options can be used to treat solitary early-stage lesions but do not address the underlying risk of recurrent tumor formation or the transformation to a malignant phenotype. An understanding of the specific molecular genetic factors associated with tumor formation should lead to targeted therapies th...
Birth transitions: pathophysiology, the onset of consciousness and possible implications for neonatal maladjustment syndrome in the foal.
Equine veterinary journal    October 15, 2013   Volume 45, Issue 6 656-660 doi: 10.1111/evj.12120
Diesch TJ, Mellor DJ.No abstract available
Species-specificity of equine and porcine Lawsonia intracellularis isolates in laboratory animals.
Canadian journal of veterinary research = Revue canadienne de recherche veterinaire    October 15, 2013   Volume 77, Issue 4 261-272 
Sampieri F, Vannucci FA, Allen AL, Pusterla N, Antonopoulos AJ, Ball KR, Thompson J, Dowling PM, Hamilton DL, Gebhart CJ.Lawsonia intracellularis infection causes proliferative enteropathy (PE) in many mammalian species, with porcine and equine proliferative enteropathy (PPE and EPE) known worldwide. Hamsters are a well-published animal model for PPE infection studies in pigs. There is no laboratory animal model for EPE infection studies and it is not known whether there is species-specificity for equine or porcine isolates of L. intracellularis in animal models. The objective of this study was to determine whether it is possible to generate typical EPE lesions in hamsters after inoculation with an equine strain...
A sensitive nested real-time RT-PCR for the detection of Shuni virus.
Journal of virological methods    October 14, 2013   Volume 195 100-105 doi: 10.1016/j.jviromet.2013.10.008
Van Eeden C, Zaayman D, Venter M.Recently Shuni virus (SHUV) has been identified in clinical cases of neurological disease in horses in South Africa. Being that it was one of the less recognized orthobunyaviruses, with limited clinical descriptions of disease dating back to the 1960s and 1970s, SHUV-specific assays were never developed. In this study, the development of a nested real-time PCR assay is described for the detection of SHUV by means of melt-curve analysis using fluorescence resonance energy transfer (FRET) probe technology. The assay was validated against previously positive clinical specimens and a dilution seri...
Equine sarcoidosis.
The Veterinary clinics of North America. Equine practice    October 10, 2013   Volume 29, Issue 3 615-627 doi: 10.1016/j.cveq.2013.08.004
Sloet van Oldruitenborgh-Oosterbaan MM, Grinwis GC.Equine sarcoidosis seems to be an emerging problem. As more horses are referred for dermatologic disease, equine sarcoidosis should be considered in any case of exfoliative and/or nodular skin disease with or without systemic involvement, including generalized granulomatous disease affecting most internal organs. Multiple breeds are affected with mares being predisposed. Affected horses are typically 3 years or older. The prognosis for generalized granulomatous disease is generally poor, whereas the prognosis for the localized cutaneous form is favorable but may require lifelong treatment.
Ancient trade routes shaped the genetic structure of horses in eastern Eurasia.
Molecular ecology    October 9, 2013   Volume 22, Issue 21 5340-5351 doi: 10.1111/mec.12491
Warmuth VM, Campana MG, Eriksson A, Bower M, Barker G, Manica A.Animal exchange networks have been shown to play an important role in determining gene flow among domestic animal populations. The Silk Road is one of the oldest continuous exchange networks in human history, yet its effectiveness in facilitating animal exchange across large geographical distances and topographically challenging landscapes has never been explicitly studied. Horses are known to have been traded along the Silk Roads; however, extensive movement of horses in connection with other human activities may have obscured the genetic signature of the Silk Roads. To investigate the role o...
Localization of alkali-labile sites in donkey (Equus asinus) and stallion (Equus caballus) spermatozoa.
Theriogenology    October 7, 2013   Volume 81, Issue 2 321-325 doi: 10.1016/j.theriogenology.2013.10.001
Cortés-Gutiérrez EI, Dávila-Rodríguez MI, López-Fernández C, Fernández JL, Crespo F, Gosálvez J.The presence of constitutive alkali-labile sites (ALS) has been investigated using a protocol of DNA breakage detection-fluorescence in situ hybridization and comet assay in spermatozoa of donkey (Equus asinus) and stallion (Equus caballus). These results were compared with those obtained using a similar experimental approach using somatic cells. The relative abundance of ALS was of the order of four times more in spermatozoa than in somatic cells. Alkali-labile sites showed a tendency to cluster localized at the equatorial-distal regions of the sperm. The amount of hybridized signal in the AL...
Identification of potential platelet alloantigens in the Equidae family by comparison of gene sequences encoding major platelet membrane glycoproteins.
Veterinary clinical pathology    October 4, 2013   Volume 42, Issue 4 437-442 doi: 10.1111/vcp.12084
Boudreaux MK, Humphries DM.Platelet alloantigens in horses may play an important role in the development of neonatal alloimmune thrombocytopenia (NAIT). Objective: The objective of this study was to evaluate genes encoding major platelet glycoproteins within the Equidae family in an effort to identify potential alloantigens. Methods: DNA was isolated from blood samples obtained from Equidae family members, including a Holsteiner-Oldenburg cross, a Quarter horse, a donkey, and a Plains zebra (Equus burchelli). Gene sequences encoding equine platelet membrane glycoproteins IIb, IIIa (integrin subunits αIIb and β3), Ia (...
Identification of Actinomyces denticolens as a cause of a soft tissue abscess in a horse.
Australian veterinary journal    October 1, 2013   Volume 91, Issue 10 416-417 doi: 10.1111/avj.12102
Feary DJ, Abraham S, Woolford L, Trott DJ.A 6-year-old Arabian mare had a 4-week history of a subcutaneous mass (15 × 15 cm) at the base of the neck, cranial and distal to the prescapular lymph node on the right side. The mass was solid and painful on deep palpation. Ultrasonographic examination showed a soft-tissue abscess. Purulent aspirate was submitted for bacterial culture, which showed a moderate growth of an Actinomyces species. 16S rRNA gene sequencing was performed for definitive identification. Gene sequencing demonstrated close nucleotide homology with A. denticolens. Prolonged therapeutic management resulted in resolu...
An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction.
PloS one    October 1, 2013   Volume 8, Issue 10 e77599 doi: 10.1371/journal.pone.0077599
Biddle AS, Black SJ, Blanchard JL.Laminitis is a chronic, crippling disease triggered by the sudden influx of dietary starch. Starch reaches the hindgut resulting in enrichment of lactic acid bacteria, lactate accumulation, and acidification of the gut contents. Bacterial products enter the bloodstream and precipitate systemic inflammation. Hindgut lactate levels are normally low because specific bacterial groups convert lactate to short chain fatty acids. Why this mechanism fails when lactate levels rapidly rise, and why some hindgut communities can recover is unknown. Fecal samples from three adult horses eating identical di...
Inflammatory effects of autologous, genetically modified autologous, allogeneic, and xenogeneic mesenchymal stem cells after intra-articular injection in horses.
Veterinary and comparative orthopaedics and traumatology : V.C.O.T    October 1, 2013   Volume 26, Issue 6 453-460 doi: 10.3415/VCOT-13-01-0008
Pigott JH, Ishihara A, Wellman ML, Russell DS, Bertone AL.To compare the clinical and inflammatory joint responses to intra-articular injection of bone marrow-derived mesenchymal stem cells (MSC) including autologous, genetically modified autologous, allogeneic, or xenogeneic cells in horses. Methods: Six five-year-old Thoroughbred mares had one fetlock joint injected with Gey's balanced salt solution as the vehicle control. Each fetlock joint of each horse was subsequently injected with 15 million MSC from the described MSC groups, and were assessed for 28 days for clinical and inflammatory parameters representing synovitis, joint swelling, and pain...
Engineering of a recombinant trivalent single-chain variable fragment antibody directed against rabies virus glycoprotein G with improved neutralizing potency.
Molecular immunology    October 1, 2013   Volume 57, Issue 2 66-73 doi: 10.1016/j.molimm.2013.08.009
Turki I, Hammami A, Kharmachi H, Mousli M.Human and equine rabies immunoglobulins are currently available for passive immunization against rabies. However, these are hampered by the limited supply and some drawbacks. Advances in antibody engineering have led to overcome issues of clinical applications and to improve the protective efficacy. In the present study, we report the generation of a trivalent single-chain Fv (scFv50AD1-Fd), that recognizes the rabies virus glycoprotein, genetically fused to the trimerization domain of the bacteriophage T4 fibritin, termed 'foldon' (Fd). scFv50AD1-Fd was expressed as soluble recombinant protei...
Breed Differences in Dopamine Receptor D4 Gene (DRD4) in Horses.
Journal of equine science    September 30, 2013   Volume 24, Issue 3 31-36 doi: 10.1294/jes.24.31
Hori Y, Ozaki T, Yamada Y, Tozaki T, Kim HS, Takimoto A, Endo M, Manabe N, Inoue-Murayama M, Fujita K.Genetic polymorphisms in genes related to neurotransmitters or hormones affect personality or behavioral traits in many animal species including humans. In domestic animals, the allele frequency of such genes has been reported to be different among breeds and it may account for breed differences in behavior. In this study, we investigated breed differences in horses in the dopamine receptor D4 gene (DRD4), which has been reported to affect horse personality. We collected samples from seven horse breeds including those native to Japan and Korea, and compared the sequence of the DRD4 exon3 regio...
Accumulating mutations in series of haplotypes at the KIT and MITF loci are major determinants of white markings in Franches-Montagnes horses.
PloS one    September 30, 2013   Volume 8, Issue 9 e75071 doi: 10.1371/journal.pone.0075071
Haase B, Signer-Hasler H, Binns MM, Obexer-Ruff G, Hauswirth R, Bellone RR, Burger D, Rieder S, Wade CM, Leeb T.Coat color and pattern variations in domestic animals are frequently inherited as simple monogenic traits, but a number are known to have a complex genetic basis. While the analysis of complex trait data remains a challenge in all species, we can use the reduced haplotypic diversity in domestic animal populations to gain insight into the genomic interactions underlying complex phenotypes. White face and leg markings are examples of complex traits in horses where little is known of the underlying genetics. In this study, Franches-Montagnes (FM) horses were scored for the occurrence of white fac...