Analyze Diet

Topic:Population Dynamics

The population dynamics of horses refers to the study of changes in horse populations over time, influenced by factors such as birth rates, death rates, immigration, and emigration. These dynamics are shaped by environmental conditions, resource availability, predation, and human intervention. Understanding population dynamics is essential for managing wild horse populations and ensuring sustainable practices in breeding and conservation efforts. This page compiles peer-reviewed research studies and scholarly articles that explore the factors affecting horse population dynamics, including genetic diversity, habitat utilization, and the impact of management strategies on population stability and growth.
Development of EMA-2 recombinant antigen based enzyme-linked immunosorbent assay for seroprevalence studies of Theileria equi infection in Indian equine population.
Veterinary parasitology    September 7, 2013   Volume 198, Issue 1-2 10-17 doi: 10.1016/j.vetpar.2013.08.030
Kumar S, Kumar R, Gupta AK, Yadav SC, Goyal SK, Khurana SK, Singh RK.Equine piroplasmosis is a tick-transmitted protozoan disease caused by Theileria equi and/or Babesia caballi. In the present study, we expressed a 53kDa protein from the truncated EMA-2 gene of T. equi (Indian strain) and developed EMA-2ELISA using this expressed protein. This ELISA is able to detect T. equi-specific antibodies in experimentally infected animals as early as 9 days post-infection. The assay developed was validated with the OIE recommended competitive ELISA (cELISA) on 120 serum samples and significant agreement (kappa=0.93) was observed between results of both the ELISAs which ...
Increasing density leads to generalization in both coarse-grained habitat selection and fine-grained resource selection in a large mammal.
The Journal of animal ecology    August 9, 2013   Volume 83, Issue 1 147-156 doi: 10.1111/1365-2656.12115
van Beest FM, Uzal A, Vander Wal E, Laforge MP, Contasti AL, Colville D, McLoughlin PD.Density is a fundamental driver of many ecological processes including habitat selection. Theory on density-dependent habitat selection predicts that animals should be distributed relative to profitability of habitat, resulting in reduced specialization in selection (i.e. generalization) as density increases and competition intensifies. Despite mounting empirical support for density-dependent habitat selection using isodars to describe coarse-grained (interhabitat) animal movements, we know little of how density affects fine-grained resource selection of animals within habitats [e.g. using res...
Local density and group size interacts with age and sex to determine direction and rate of social dispersal in a polygynous mammal.
Ecology and evolution    August 1, 2013   Volume 3, Issue 9 3073-3082 doi: 10.1002/ece3.694
Marjamäki PH, Contasti AL, Coulson TN, McLoughlin PD.Movement away from an area or social group in response to increasing density (density-dependent dispersal) is known for most species; why it evolves is fundamental to our understanding of ecology and evolution. However, we have yet to fully appreciate how individuals of varying conditions (e.g., age and sex) might differently consider effects of density (quorum) when deciding to disperse or not, and scale dependence in their sense of quorum. We tracked movements of all individuals of a naturalized population of feral horses (Equus ferus caballus; Sable Island National Park Reserve, Nova Scotia...
Mitochondrial and pedigree analysis in Przewalski’s horse populations: implications for genetic management and reintroductions.
Mitochondrial DNA    July 1, 2013   Volume 25, Issue 4 313-318 doi: 10.3109/19401736.2013.800487
Liu G, Xu CQ, Cao Q, Zimmermann W, Songer M, Zhao SS, Li K, Hu DF.Przewalski's horses have been imported from the western zoos to China since 1985. Yet the genetic diversity in China's populations has not been studied, thus lacking of such knowledge inevitably affects this population's management. The aim of this study was to assess genetic diversity in Chinese population of Przewalski's horses via mitochondrial DNA (mtDNA) control region and pedigree analysis. Methods: Two captive and one reintroduced populations were examined based on mitochondrial DNA control region variation via fecal sampling from 2010 to 2012, together with pedigree analysis. Results: ...
Profiling the careers of Thoroughbred horses racing in Hong Kong between 2000 and 2010.
Equine veterinary journal    May 15, 2013   Volume 45, Issue 6 694-699 doi: 10.1111/evj.12078
Velie BD, Stewart BD, Lam K, Wade CM, Hamilton NA.Research in Thoroughbred racehorses is often specific to horses from a given racing population or region. In order to investigate trends in racehorse careers across populations accurately, population-specific benchmarks for performance outcomes must be established. Objective: To provide summary statistics for performance outcomes for Thoroughbreds racing in Hong Kong between 2000 and 2010 and to document and provide evidence on the current differences in racing careers across sexes and regions of origin for horses racing in Hong Kong. Methods: Performance data on the population of Thoroughbred...
Genetic diversity and conservation in a small endangered horse population.
Journal of applied genetics    May 7, 2013   Volume 54, Issue 3 285-292 doi: 10.1007/s13353-013-0151-3
Janova E, Futas J, Klumplerova M, Putnova L, Vrtkova I, Vyskocil M, Frolkova P, Horin P.The Old Kladruber horses arose in the 17th century as a breed used for ceremonial purposes. Currently, grey and black coat colour varieties exist as two sub-populations with different recent breeding history. As the population underwent historical bottlenecks and intensive inbreeding, loss of genetic variation is considered as the major threat. Therefore, genetic diversity in neutral and non-neutral molecular markers was examined in the current nucleus population. Fifty microsatellites, 13 single nucleotide polymorphisms (SNPs) in immunity-related genes, three mutations in coat colour genes an...
Genetic structure and gene flows within horses: a genealogical study at the french population scale.
PloS one    April 22, 2013   Volume 8, Issue 4 e61544 doi: 10.1371/journal.pone.0061544
Pirault P, Danvy S, Verrier E, Leroy G.Since horse breeds constitute populations submitted to variable and multiple outcrossing events, we analyzed the genetic structure and gene flows considering horses raised in France. We used genealogical data, with a reference population of 547,620 horses born in France between 2002 and 2011, grouped according to 55 breed origins. On average, individuals had 6.3 equivalent generations known. Considering different population levels, fixation index decreased from an overall species FIT of 1.37%, to an average [Formula: see text] of -0.07% when considering the 55 origins, showing that most horse ...
Genetic diversity and phylogenetic analysis of native mountain ponies of Britain and Ireland reveals a novel rare population.
Ecology and evolution    March 5, 2013   Volume 3, Issue 4 934-947 doi: 10.1002/ece3.507
Winton CL, Hegarty MJ, McMahon R, Slavov GT, McEwan NR, Davies-Morel MC, Morgan CM, Powell W, Nash DM.The conservation of unique populations of animals is critical in order to preserve valuable genetic diversity and, where populations are free-living, maintain their irreplaceable influence upon habitat ecology. An accurate assessment of genetic diversity and structure within and between populations is crucial in order to design and implement conservation strategies in natural and domesticated species. Moreover, where it is possible to identify relic populations that are related to a structured breed an ideal opportunity presents itself to model processes that reveal historical factors that hav...
Microsatellite analysis of genetic diversity and population structure of Arabian horse populations.
The Journal of heredity    February 28, 2013   Volume 104, Issue 3 386-398 doi: 10.1093/jhered/est003
Khanshour A, Conant E, Juras R, Cothran EG.The Arabian horse ignites imagination throughout the world. Populations of this breed exist in many countries, and recent genetic work has examined the diversity and ancestry of a few of these populations in isolation. Here, we explore 7 different populations of Arabians represented by 682 horses. Three of these are Middle Eastern populations from near the historical origin of the breed, including Syrian, Persian, and Saudi Arabian. The remaining Western populations are found in Europe (the Shagya Arabian and Polish Arabian) and in America (American Arabian). Analysis of genetic structure was ...
A genome-wide association study indicates LCORL/NCAPG as a candidate locus for withers height in German Warmblood horses.
Animal genetics    February 18, 2013   Volume 44, Issue 4 467-471 doi: 10.1111/age.12031
Tetens J, Widmann P, Kühn C, Thaller G.A genome-wide association scan for loci affecting withers height was conducted in 782 German Warmblood stallions, which were genotyped using the Illumina EquineSNP50 Bead Chip. A principal components approach was applied to correct for population structure. The analysis revealed a single major QTL on ECA3 explaining ~18 per cent of the phenotypic variance, which is in concordance with recent reports from other horse populations. The LCORL/NCAPG locus represents a strong candidate gene for this QTL. This locus is among a small number that have consistently been identified to influence human hei...
Genetic diversity in the modern horse illustrated from genome-wide SNP data.
PloS one    January 30, 2013   Volume 8, Issue 1 e54997 doi: 10.1371/journal.pone.0054997
Petersen JL, Mickelson JR, Cothran EG, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A, Distl O....Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of horses for transportation, warfare, and agriculture, as well as selection for desired traits and fitness, has resulted in diverse populations distributed across the world, many of which have become or are in the process of becoming formally organized into closed, breeding populations (breeds). This report describes the use of a genome-wide set of autosomal SNPs and 814 horses from 36 breeds to provide the first detailed description of equine breed diversity. F(ST) calculations, parsimony, and dista...
Contraception can lead to trophic asynchrony between birth pulse and resources.
PloS one    January 28, 2013   Volume 8, Issue 1 e54972 doi: 10.1371/journal.pone.0054972
Ransom JI, Hobbs NT, Bruemmer J.Abiotic inputs such as photoperiod and temperature can regulate reproductive cyclicity in many species. When humans perturb this process by intervening in reproductive cycles, the ecological consequences may be profound. Trophic mismatches between birth pulse and resources in wildlife species may cascade toward decreased survival and threaten the viability of small populations. We followed feral horses (Equus caballus) in three populations for a longitudinal study of the transient immunocontraceptive porcine zona pellucida (PZP), and found that repeated vaccinations extended the duration of in...
Genome-wide analysis reveals selection for important traits in domestic horse breeds.
PLoS genetics    January 17, 2013   Volume 9, Issue 1 e1003211 doi: 10.1371/journal.pgen.1003211
Petersen JL, Mickelson JR, Rendahl AK, Valberg SJ, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A....Intense selective pressures applied over short evolutionary time have resulted in homogeneity within, but substantial variation among, horse breeds. Utilizing this population structure, 744 individuals from 33 breeds, and a 54,000 SNP genotyping array, breed-specific targets of selection were identified using an F(ST)-based statistic calculated in 500-kb windows across the genome. A 5.5-Mb region of ECA18, in which the myostatin (MSTN) gene was centered, contained the highest signature of selection in both the Paint and Quarter Horse. Gene sequencing and histological analysis of gluteal muscle...
A Bayesian approach for estimating detection times in horses: exploring the pharmacokinetics of a urinary acepromazine metabolite.
Journal of veterinary pharmacology and therapeutics    January 16, 2013   Volume 36, Issue 1 31-42 doi: 10.1111/j.1365-2885.2013.01389.x
McGree JM, Noble G, Schneiders F, Dunstan AJ, McKinney AR, Boston R, Sillence M.We describe the population pharmacokinetics of an acepromazine (ACP) metabolite (2-(1-hydroxyethyl)promazine) (HEPS) in horses for the estimation of likely detection times in plasma and urine. ACP (30 mg) was administered to 12 horses, and blood and urine samples were taken at frequent intervals for chemical analysis. A bayesian hierarchical model was fitted to describe concentration-time data and cumulative urine amounts for HEPS. The metabolite HEPS was modelled separately from the parent ACP as the half-life of the parent was considerably less than that of the metabolite. The clearance (Cl/...
Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse.
Genetics, selection, evolution : GSE    January 2, 2013   Volume 45, Issue 1 1 doi: 10.1186/1297-9686-45-1
Leroy G, Mary-Huard T, Verrier E, Danvy S, Charvolin E, Danchin-Burge C.Effective population sizes of 140 populations (including 60 dog breeds, 40 sheep breeds, 20 cattle breeds and 20 horse breeds) were computed using pedigree information and six different computation methods. Simple demographical information (number of breeding males and females), variance of progeny size, or evolution of identity by descent probabilities based on coancestry or inbreeding were used as well as identity by descent rate between two successive generations or individual identity by descent rate. Results: Depending on breed and method, effective population sizes ranged from 15 to 133 ...
Implementation of Optimum Contributions selection in endangered local breeds: the case of the Menorca Horse population.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    December 27, 2012   Volume 130, Issue 3 218-226 doi: 10.1111/jbg.12023
Solé M, Valera M, Gómez MD, Cervantes I, Fernández J.Limiting the inbreeding rate (∆F) while maximizing genetic gain for any trait of economic interest is especially important in small populations of local breeds, like the Menorca Horse. In this breed, dressage performance is important for the profitability of the breed and should be accounted in the selection criterion. The aim of this study was to assess if a breeding programme aiming at improved dressage performance is feasible in such a small breed. To perform the analysis, animals that were currently available for breeding (between 3 and 20 years) were used. Selection was based on the es...
Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.
PLoS pathogens    December 20, 2012   Volume 8, Issue 12 e1003081 doi: 10.1371/journal.ppat.1003081
Hughes J, Allen RC, Baguelin M, Hampson K, Baillie GJ, Elton D, Newton JR, Kellam P, Wood JL, Holmes EC, Murcia PR.The ability of influenza A viruses (IAVs) to cross species barriers and evade host immunity is a major public health concern. Studies on the phylodynamics of IAVs across different scales - from the individual to the population - are essential for devising effective measures to predict, prevent or contain influenza emergence. Understanding how IAVs spread and evolve during outbreaks is critical for the management of epidemics. Reconstructing the transmission network during a single outbreak by sampling viral genetic data in time and space can generate insights about these processes. Here, we ob...
Population genetics of Parascaris equorum based on DNA fingerprinting.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases    November 17, 2012   Volume 13 236-241 doi: 10.1016/j.meegid.2012.09.022
Tydén E, Morrison DA, Engström A, Nielsen MK, Eydal M, Höglund J.The large roundworm of horses, Parascaris equorum is considered ubiquitous in breeding operations, and is regarded as a most important helminth pathogen of foals. Over the past decade, this parasite has been reported increasingly resistant to anthelmintic drugs worldwide. This paper reports analysis of the population genetic structure of P. equorum. Adult parasites (n=194) collected from Sweden, Norway, Iceland, Germany, Brazil and the USA were investigated by amplified restriction fragment length polymorphism (AFLP) analysis. The genetic variation was low (Hj=0.12-0.4), for the global populat...
Explaining spatial heterogeneity in population dynamics and genetics from spatial variation in resources for a large herbivore.
PloS one    October 31, 2012   Volume 7, Issue 10 e47858 doi: 10.1371/journal.pone.0047858
Contasti AL, Tissier EJ, Johnstone JF, McLoughlin PD.Fine-scale spatial variation in genetic relatedness and inbreeding occur across continuous distributions of several populations of vertebrates; however, the basis of observed variation is often left untested. Here we test the hypothesis that prior observations of spatial patterns in genetics for an island population of feral horses (Sable Island, Canada) were the result of spatial variation in population dynamics, itself based in spatial heterogeneity in underlying habitat quality. In order to assess how genetic and population structuring related to habitat, we used hierarchical cluster analys...
The human and animal health impacts of introduction and spread of an exotic strain of West Nile virus in Australia.
Preventive veterinary medicine    October 23, 2012   Volume 109, Issue 3-4 186-204 doi: 10.1016/j.prevetmed.2012.09.018
Hernández-Jover M, Roche S, Ward MP.Vector-borne diseases can have substantial impacts on human and animal health, including major epidemics. West Nile virus (WNV) is of particular international importance due to its recent emergence and impact in the Western Hemisphere. Despite the presence of a sub-type of WNV (Kunjin virus, KUN) in Australia, a potential ecological niche could be occupied by an exotic strain of WNV of the North American type. This study assesses the probability an exotic strain of WNV enters Australia via an infected mosquito in an aircraft from the United States (U.S.) landing at Sydney airport, the probabil...
The association of age at first start with career length in the Australian Thoroughbred racehorse population.
Equine veterinary journal    September 26, 2012   Volume 45, Issue 4 410-413 doi: 10.1111/j.2042-3306.2012.00651.x
Velie BD, Knight PK, Thomson PC, Wade CM, Hamilton NA.Studies of Thoroughbred racing populations have provided evidence of a positive effect on racing careers for horses that commence racing as 2-year-olds. Currently, research investigating the presence of this effect in the Australian Thoroughbred racing population is limited. Objective: To investigate the association between age at first start and career length in the Australian Thoroughbred population and estimate the risk of racing retirement for horses racing in Australia based on age at first start, career earnings, number of starts as a 2-year-old and distance raced. Methods: Data were col...
The feral horse foot. Part A: observational study of the effect of environment on the morphometrics of the feet of 100 Australian feral horses.
Australian veterinary journal    September 21, 2012   Volume 91, Issue 1-2 14-22 doi: 10.1111/j.1751-0813.2012.00995.x
Hampson BA, de Laat MA, Mills PC, Pollitt CC.To better understand the morphology of, and the effect of different travel patterns and varying substrate environments on, the feral horse foot to better manage the feet of domestic horses. Methods: The left forefeet of 20 adult feral horses from each of five geographically separated populations in Australia (n = 100) were investigated. Populations were selected on the basis of substrate hardness under foot and the amount of travel typical for the population. Feet were radiographed and photographed and 40 morphometric measurements of each foot were obtained. Results: Of the 40 parameters, 37 d...
The potential of embryo transfer in a German horse-breeding programme.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    September 7, 2012   Volume 130, Issue 3 199-208 doi: 10.1111/jbg.12003
Sitzenstock F, Rathke I, Ytournel F, Simianer H.A reference horse-breeding programme with 13500 foals each year was modelled with ZPLAN+. This new software for the optimization of the structures in breeding programmes is based on ZPLAN. In two scenarios, the implementation of a rigorous selection of mares was implemented. In scenario I, the mare performance test was the point of selection, while in scenario II, further information on 20 competitions in two more years is available. These selected mares were used for embryo transfer (ET), partly in combination with multiple ovulation (MOET). The selection intensity and the number of foals out...
Genetic diversity and population structure of Chinese pony breeds using microsatellite markers.
Genetics and molecular research : GMR    August 16, 2012   Volume 11, Issue 3 2629-2640 doi: 10.4238/2012.June.25.4
Xu LX, Yang SL, Lin RY, Yang HB, Li AP, Wan QS.China is one of the principal origins of ponies in the world. We made a comprehensive analysis of genetic diversity and population structure of Chinese ponies based on 174 animals of five indigenous Chinese pony breeds from five provinces using 13 microsatellite markers. One hundred and forty-four alleles were detected; the mean number of effective alleles among the pony breeds ranged from 5.38 (Guizhou) to 6.78 (Sichuan); the expected heterozygosity ranged from 0.82 (Guizhou) to 0.85 (Debao, Sichuan). Although abundant genetic variation was found, the genetic differentiation was low between t...
Profiling the careers of Thoroughbred horses racing in Australia between 2000 and 2010.
Equine veterinary journal    August 1, 2012   Volume 45, Issue 2 182-186 doi: 10.1111/j.2042-3306.2012.00614.x
Velie BD, Wade CM, Hamilton NA.Research investigating trends in racehorse careers require a benchmark for accurate comparison. Currently little whole population data exists for horses racing in Australia. Objective: To determine the range and variation in career length and number of career starts for horses racing in Australia. To document and provide evidence regarding the current differences between the sexes for career length and careers starts. Methods: Racing data were collected for Thoroughbreds over a 10-year period. Career length, number of career starts and spells per year were evaluated. Statistical analyses were ...
Similar slow down in running speed progression in species under human pressure.
Journal of evolutionary biology    July 11, 2012   Volume 25, Issue 9 1792-1799 doi: 10.1111/j.1420-9101.2012.02563.x
Desgorces FD, Berthelot G, Charmantier A, Tafflet M, Schaal K, Jarne P, Toussaint JF.Running speed in animals depends on both genetic and environmental conditions. Maximal speeds were here analysed in horses, dogs and humans using data sets on the 10 best performers covering more than a century of races. This includes a variety of distances in humans (200-1500 m). Speed has been progressing fast in the three species, and this has been followed by a plateau. Based on a Gompertz model, the current best performances reach 97.4% of maximal velocity in greyhounds to 100.3 in humans. Further analysis based on a subset of individuals and using an 'animal model' shows that running spe...
A description of the demographic characteristics of the New Zealand non-commercial horse population with data collected using a generalised random-tessellation stratified sampling design.
Preventive veterinary medicine    July 4, 2012   Volume 107, Issue 3-4 242-252 doi: 10.1016/j.prevetmed.2012.05.016
Rosanowski SM, Cogger N, Rogers CW, Benschop J, Stevenson MA.We conducted a cross-sectional survey to determine the demographic characteristics of non-commercial horses in New Zealand. A sampling frame of properties with non-commercial horses was derived from the national farms database, AgriBase™. Horse properties were stratified by property size and a generalised random-tessellated stratified (GRTS) sampling strategy was used to select properties (n=2912) to take part in the survey. The GRTS sampling design allowed for the selection of properties that were spatially balanced relative to the distribution of horse properties throughout the country. Th...
Mitochondrial DNA D-loop sequence variation in maternal lineages of Iranian native horses.
Animal genetics    June 26, 2012   Volume 44, Issue 2 209-213 doi: 10.1111/j.1365-2052.2012.02389.x
Moridi M, Masoudi AA, Vaez Torshizi R, Hill EW.To understand the origin and genetic diversity of Iranian native horses, mitochondrial DNA (mtDNA) D-loop sequences were generated for 95 horses from five breeds sampled in eight geographical locations in Iran. Sequence analysis of a 247-bp segment revealed a total of 27 haplotypes with 38 polymorphic sites. Twelve of 19 mtDNA haplogroups were identified in the samples. The most common haplotypes were found within haplogroup X2. Within-population haplotype and nucleotide diversities of the five breeds ranged from 0.838 ± 0.056 to 0.974 ± 0.022 and 0.011 ± 0.002 to 0.021 ± 0.001 res...
Pedigrees as a source of information in mtDNA studies of dogs and horses.
Animal genetics    June 21, 2012   Volume 44, Issue 2 227-230 doi: 10.1111/j.1365-2052.2012.02388.x
Głażewska I, Prusak B, Gralak B.The goal of this study was to demonstrate the usefulness of pedigree data in studies of mitochondrial DNA diversity in dogs and horses. Pedigree information allows for precisely choosing animals with distinct haplotypes for analysis, makes it possible to find rare haplotypes present exclusively in single individuals and helps to evaluate haplotype frequencies at the present and in the past. Estimating founder contributions to gene pools enables evaluating the parts of gene pools observed with the help of mtDNA analysis. An important aspect is also the financial benefits: using pedigree data, r...
Autosomal genetic diversity in non-breed horses from eastern Eurasia provides insights into historical population movements.
Animal genetics    May 21, 2012   Volume 44, Issue 1 53-61 doi: 10.1111/j.1365-2052.2012.02371.x
Warmuth V, Manica A, Eriksson A, Barker G, Bower M.Many events in the history of eastern Eurasia, including the process of domestication itself, the initial spread of domestic horses and subsequent movements, are believed to have affected the genetic structure of domestic horse populations in this area. We investigated levels of within- and between-population genetic diversity in 'non-breed horses' (working horses sampled in remote areas) from 17 locations in Asia and parts of Eastern Europe, using 26 autosomal microsatellite loci. Non-breed horses have not been subject to the same intensity of artificial selection and closed breeding as have ...
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