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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Isolation and characterization of an equine foamy virus.
Journal of virology    February 7, 2001   Volume 74, Issue 9 4064-4073 doi: 10.1128/jvi.74.9.4064-4073.2000
Tobaly-Tapiero J, Bittoun P, Neves M, Guillemin MC, Lecellier CH, Puvion-Dutilleul F, Gicquel B, Zientara S, Giron ML, de Thé H, Saïb A.Foamy viruses (FVs) are complex retroviruses which have been isolated from different animal species including nonhuman primates, cattle, and cats. Here, we report the isolation and characterization of a new FV isolated from blood samples of horses. Similar to other FVs, the equine foamy virus (EFV) exhibits a highly characteristic ultrastructure and induces syncytium formation and subsequent cell lysis on a large number of cell lines. Molecular cloning of EFV reveals that the general organization is that of other known FVs, whereas sequence similarity with its bovine FV counterpart is only 40%...
Phylogenetic analysis of partial mitochondrial cytochrome oxidase c subunit I and large ribosomal RNA sequences and nuclear internal transcribed spacer I sequences from species of Cyathostominae and Strongylinae (Nematoda, Order Strongylida), parasites of the horse.
Parasitology    January 13, 2001   Volume 121 Pt 6 649-659 doi: 10.1017/s003118200000696x
McDonnell A, Love S, Tait A, Lichtenfels JR, Matthews JB.Three nucleotide data sets, one nuclear (ITS-2) and two mitochondrial (COI and l-rRNA), have been investigated in order to determine relationships among species of Strongylinae and Cyathostominae, intestinal parasites of the horse. The data exhibited a strong mutational bias towards A and T and in the COI gene, silent sites appeared to saturate rapidly partly due to this substitution bias. Thus, the COI gene was found to be less phylogenetically informative than the l-rRNA and ITS-2 genes. Combined analysis of the l-rRNA and ITS-2 genes supported a monophyletic clade of the cyathostomes with T...
The equine herpesvirus 1 immediate-early protein interacts with EAP, a nucleolar-ribosomal protein.
Virology    January 9, 2001   Volume 279, Issue 1 173-184 doi: 10.1006/viro.2000.0725
Kim SK, Buczynski KA, Caughman GB, O'Callaghan DJ.The equine herpesvirus 1 (EHV-1) immediate-early (IE) phosphoprotein is essential for the activation of transcription from viral early and late promoters and regulates transcription from its own promoter. The IE protein of 1487 amino acids contains a serine-rich tract (SRT) between residues 181 and 220. Deletion of the SRT decreased transactivation activity of the IE protein. Previous results from investigation of the ICP4 protein, the IE homolog of herpes simplex virus 1 (HSV-1), revealed that a domain containing a serine-rich tract interacts with EAP (Epstein-Barr virus-encoded small nuclear...
Genetic and biological variation in equine infectious anemia virus Rev correlates with variable stages of clinical disease in an experimentally infected pony.
Virology    January 9, 2001   Volume 279, Issue 1 185-200 doi: 10.1006/viro.2000.0696
Belshan M, Baccam P, Oaks JL, Sponseller BA, Murphy SC, Cornette J, Carpenter S.Genetic and biological variation in the regulatory protein Rev of equine infectious anemia virus (EIAV) were examined throughout a clinically dynamic disease course of an experimentally infected pony. Following infection with the virulent EIAV(Wyo), the pony underwent a variable disease course, including an acute fever episode at 12 days postinfection (DPI), multiple recurrent fever episodes until 135 DPI, a prolonged subclinical period, and two late fever episodes. Viral RNA was isolated from the inoculum and sequential sera samples, and the rev exon 2/gp45 overlapping ORFs were amplified, cl...
The “galloping” history of intermittent claudication.
VASA. Zeitschrift fur Gefasskrankheiten    January 6, 2001   Volume 29, Issue 4 295-299 doi: 10.1024/0301-1526.29.4.295
Bollinger A, Eckert J, Rüttimann B, Becker F.Intermittent claudication (IC) due to arterial occlusive disease was first diagnosed by the French veterinary surgeon Jean-François Bouley jeune in a horse drawing a cabriolet in the streets of Paris as early as 1831. The animal was repeatedly exercised and always started to limp with the hind legs at similar work loads. Autopsy revealed partially thrombosed aneurysm of the abdominal aorta and occlusions of both femoral arteries which were correctly identified as the cause of IC. In 1858 the famous neurologist Jean-Martin Charcot working at the Salpêtrière in Paris first discovered the cond...
Molecular cloning, sequencing, and expression of equine interleukin-6.
Veterinary immunology and immunopathology    January 4, 2001   Volume 77, Issue 3-4 213-220 doi: 10.1016/s0165-2427(00)00241-5
Swiderski CE, Sobol G, Lunn DP, Horohov DW.Equine interleukin-6 (IL-6) cDNA was amplified from mitogen-stimulated equine peripheral blood mononuclear cells (PBMC) using consensus sequence primers. The 727bp amplified cDNA contains the entire coding region for equine IL-6 and includes 118 bases in the 3' non-translated region. The coding sequence translates to a protein of 208 amino acids with a predicted 28 amino acid leader sequence. The mature protein of 180 amino acids has a predicted molecular mass of 20471Da without post-translational modifications. The amino acid sequence of equine IL-6 displays between 46 and 84% similarity to o...
Expression and characterisation of equine interleukin 2 and interleukin 4.
Veterinary immunology and immunopathology    January 4, 2001   Volume 77, Issue 3-4 243-256 doi: 10.1016/s0165-2427(00)00249-x
Dohmann K, Wagner B, Horohov DW, Leibold W.In the present study, we describe the expression of equine IL2 and IL4. The cDNA of equine IL2 or IL4 was cloned in a mammalian expression vector, containing c-terminal myc- and six histidines His(6)-epitopes for recognition and purification of equine cytokines. The vector constructs were used for transfection of chinese hamster ovary (CHO) cells. Purified equine cytokines were characterised by western blotting. Equine IL2 was secreted with a molecular weight of approximately 17.1kDa, whereas IL4 was expressed in three different sizes of 17.1, 19.6 and 22.1kDa, probably due to different glycos...
Identification of twelve O-glycosylation sites in equine chorionic gonadotropin beta and equine luteinizing hormone ss by solid-phase Edman degradation.
Biology of reproduction    January 3, 2001   Volume 64, Issue 1 136-147 doi: 10.1095/biolreprod64.1.136
Bousfield GR, Butnev VY, Butnev VY.The O-glycosylation sites for equine LHss (eLHss) and eCGss were identified by solid-phase Edman degradation of four glycopeptides derived from the C-terminal region. Both subunits were O-glycosylated at the same 12 positions, rather than the 4-6 sites anticipated. These sites were partially glycosylated, with carbohydrate attachment ranging from 20% to 100% for eCGss and from 10% to 100% for eLHss. When the C-terminal peptide containing all but one of the O-linked oligosaccharides was removed by mild acid hydrolysis of either eLHss or eCGss, hybrid hormones could be obtained by reassociating ...
Cytogenetic localization of 44 new coding sequences in the horse.
Mammalian genome : official journal of the International Mammalian Genome Society    December 29, 2000   Volume 11, Issue 12 1093-1097 doi: 10.1007/s003350010206
Godard S, Vaiman A, Schibler L, Mariat D, Vaiman D, Cribiu EP, Guérin G.The purpose of this study was to increase the number of genes assigned by in situ hybridization to equine chromosomes and thus the number of links for comparative mapping with other species. Forty-four new sequences were added to the horse cytogenetic map by FISH mapping of BAC clones containing genes (35) or ESTs (9). Three approaches were developed: use of horse BAC clones screened with (i) horse EST primers, (ii) interspecific consensus intraexonic primers, and (iii) use of goat BAC containing genes previously localized on goat chromosomes. Present data suggest that the second approach is t...
vCLAP, a caspase-recruitment domain-containing protein of equine Herpesvirus-2, persistently activates the Ikappa B kinases through oligomerization of IKKgamma.
The Journal of biological chemistry    December 11, 2000   Volume 276, Issue 5 3183-3187 doi: 10.1074/jbc.C000792200
Poyet JL, Srinivasula SM, Alnemri ES.vCLAP, the E10 gene product of equine herpesvirus-2, is a caspase-recruitment domain (CARD)-containing protein that has been shown to induce both apoptosis and NF-kappaB activation in mammalian cells. vCLAP has a cellular counterpart, Bcl10/cCLAP, which is also an activator of apoptosis and NF-kappaB. Recent studies demonstrated that vCLAP activates NF-kappaB through an IkappaB kinase (IKK)-dependent pathway, but the underlying mechanism remains unknown. In this report, we demonstrate that vCLAP associates stably with the IKK complex through direct binding to the C-terminal region of IKKgamma....
Effect of ration and exercise on plasma creatine kinase activity and lactate concentration in Thoroughbred horses with recurrent exertional rhabdomyolysis.
American journal of veterinary research    December 7, 2000   Volume 61, Issue 11 1390-1395 doi: 10.2460/ajvr.2000.61.1390
MacLeay JM, Valberg SJ, Pagan JD, Xue JL, De La Corte FD, Roberts J.To determine the effects of 3 rations (low grain, fat, high grain) on plasma creatine kinase (CK) activity and lactate concentration in Thoroughbred horses with recurrent exertional rhabdomyolysis (RER). Methods: 5 Thoroughbreds with RER and 3 healthy Thoroughbreds (control horses). Methods: Rations were formulated to meet (low-grain and fat rations) or exceed (high-grain ration) daily energy requirements. Each ration was fed to horses in a crossover design for 3 weeks. Horses were exercised on a treadmill Monday through Friday; maximum speed on Monday and Friday was 11 m/s (6% slope), on Tues...
Methicillin-resistant coagulase-negative staphylococci isolated from healthy horses in Japan.
American journal of veterinary research    December 7, 2000   Volume 61, Issue 11 1451-1455 doi: 10.2460/ajvr.2000.61.1451
Yasuda R, Kawano J, Onda H, Takagi M, Shimizu A, Anzai T.To determine patterns of methicillin-resistant staphylococci isolated from apparently healthy horses. Methods: 44 horses from 8 riding clubs in Japan. Methods: Methicill in-resistant staphylococci were isolated from the skin or nares, using a selective medium containing a beta-(symboric) lactam antibiotic, ceftizoxime. Clonality of isolates was determined by use of pulsed-field gel electrophoresis. Detection of mecA, mecl, and mecR1 genes was accomplished by use of polymerase chain reactions. Results: Of the 44 horses, 13 (29.5%) yielded 15 isolates of methicillin-resistant staphylococci. The ...
Expression and regulation of transcripts encoding two members of the NR5A nuclear receptor subfamily of orphan nuclear receptors, steroidogenic factor-1 and NR5A2, in equine ovarian cells during the ovulatory process.
Endocrinology    December 7, 2000   Volume 141, Issue 12 4647-4656 doi: 10.1210/endo.141.12.7808
Boerboom D, Pilon N, Behdjani R, Silversides DW, Sirois J.Steroidogenic factor-1 (SF-1, NR5A1a) is a member of the NR5A nuclear receptor subfamily and has been implicated as a key transcriptional regulator of all ovarian steroidogenic genes in vitro. To establish links between the expression of SF-1 and that of the steroidogenic genes in vivo, the objectives of this study were to clone equine SF-1 and examine the regulation of its messenger RNA (mRNA) in follicular cells during human CG (hCG)-induced ovulation. The equine SF-1 primary transcript was cloned by a combination of RT-PCR techniques. Results showed that the transcript was composed of a 5'-...
Congenital hepatic fibrosis and cystic bile duct formation in Swiss Freiberger horses.
Veterinary pathology    December 6, 2000   Volume 37, Issue 6 669-671 doi: 10.1354/vp.37-6-669
Haechler S, Van den Ingh TS, Rogivue C, Ehrensperger F, Welle M.Congenital hepatic fibrosis with autosomal recessive or dominant inheritance has been described in humans, cats, piglets, and dogs. In horses, only two cases of congenital hepatic fibrosis have been previously reported. This retrospective study of records from the Institute for Animal Pathology, University of Berne, identified 30 foals with liver lesions compatible with congenital hepatic fibrosis. Anamnestic data revealed clinical signs of severe liver injury in most affected animals. Pathologic examination showed severely enlarged, firm livers with thin-walled cysts. Histologically, the live...
Characterization of a coronavirus isolated from a diarrheic foal.
Journal of clinical microbiology    December 2, 2000   Volume 38, Issue 12 4523-4526 doi: 10.1128/JCM.38.12.4523-4526.2000
Guy JS, Breslin JJ, Breuhaus B, Vivrette S, Smith LG.A coronavirus was isolated from feces of a diarrheic foal and serially propagated in human rectal adenocarcinoma (HRT-18) cells. Antigenic and genomic characterizations of the virus (isolate NC99) were based on serological comparison with other avian and mammalian coronaviruses and sequence analysis of the nucleocapsid (N) protein gene. Indirect fluorescent-antibody assay procedures and virus neutralization assays demonstrated a close antigenic relationship with bovine coronavirus (BCV) and porcine hemagglutinating encephalomyelitis virus (mammalian group 2 coronaviruses). Using previously des...
Sialic acid species as a determinant of the host range of influenza A viruses.
Journal of virology    November 23, 2000   Volume 74, Issue 24 11825-11831 doi: 10.1128/jvi.74.24.11825-11831.2000
Suzuki Y, Ito T, Suzuki T, Holland RE, Chambers TM, Kiso M, Ishida H, Kawaoka Y.The distribution of sialic acid (SA) species varies among animal species, but the biological role of this variation is largely unknown. Influenza viruses differ in their ability to recognize SA-galactose (Gal) linkages, depending on the animal hosts from which they are isolated. For example, human viruses preferentially recognize SA linked to Gal by the alpha2,6(SAalpha2,6Gal) linkage, while equine viruses favor SAalpha2,3Gal. However, whether a difference in relative abundance of specific SA species (N-acetylneuraminic acid [NeuAc] and N-glycolylneuraminic acid [NeuGc]) among different animal...
Internal ribosomal entry site-mediated translation initiation in equine rhinitis A virus: similarities to and differences from that of foot-and-mouth disease virus.
Journal of virology    November 23, 2000   Volume 74, Issue 24 11708-11716 doi: 10.1128/jvi.74.24.11708-11716.2000
Hinton TM, Li F, Crabb BS.Equine rhinitis A virus (ERAV) has recently been classified as an aphthovirus, a genus otherwise comprised of the different serotypes of Foot-and-mouth disease virus (FMDV). FMDV initiates translation via a type II internal ribosomal entry site (IRES) and utilizes two in-frame AUG codons to produce the leader proteinases Lab and Lb. Here we show that the ERAV 5' nontranslated region also possesses the core structures of a type II IRES. The functional activity of this region was characterized by transfection of bicistronic plasmids into BHK-21 cells. In this system the core type II structures, ...
Equine dinucleotide repeat loci LEX071 through LEX078.
Animal genetics    November 22, 2000   Volume 31, Issue 4 286-287 doi: 10.1046/j.1365-2052.2000.00665.x
Bailey E, Skow L, Bernoco D, DelValle A, Scavone MD, Bowling AT, Murray JD.No abstract available
New polymorphism detected in the horse MC1R gene.
Animal genetics    November 22, 2000   Volume 31, Issue 4 289-290 doi: 10.1046/j.1365-2052.2000.00655.x
Wagner HJ, Reissmann M.No abstract available
A survey of the fertility of Icelandic stallions.
Animal reproduction science    November 18, 2000   Volume 64, Issue 1-2 49-64 doi: 10.1016/s0378-4320(00)00192-5
Davies Morel MC, Gunnarsson V.Very limited information is available on the breeding performance of Icelandic stallions, let alone the effect that management practices may have had on such performance. As an extensively kept, largely genetically isolated breed of horse it provides a good model for the study of factors that affect reproductive performance without the additional complication of selective breeding, infectious infertility and breed effect. A survey was conducted using 27 Icelandic stallions covering 1590 mares within the normal Icelandic breeding system (May to September). During the season, stallions cover mar...
A novel uterine lipocalin supporting pregnancy in equids.
Cellular and molecular life sciences : CMLS    November 15, 2000   Volume 57, Issue 10 1373-1378 doi: 10.1007/PL00000622
Stewart F, Kennedy MW, Suire S.Horses, donkeys, and therefore, probably all equids, secrete a nonglycosylated, progesterone-dependent, 19-kDa protein (P19) into the uterine lumen during early pregnancy, and significant quantities of it are taken up by the developing conceptus. Sequence analysis and structural modelling have identified P19 as a lipocalin with greatest similarity to the murine major urinary protein lipocalins. However, lack of strong identity with any particular group of lipocalins and several unusual structural features, including a unique amino acid triplet within one of the invariant domains and an unusual...
Sex determination by simultaneous amplification of equine SRY and amelogenin genes.
The Journal of veterinary medical science    November 10, 2000   Volume 62, Issue 10 1109-1110 doi: 10.1292/jvms.62.1109
Hasegaw T, Sato F, Ishida N, Fukushima Y, Mukoyama H.A quick method for sex determination of horses was developed. Simultaneous amplification of the equine sex-determining region of the Y chromosome gene (SRY) and amelogenin gene (AMEL) accomplished the determination of the presence of both the Y chromosome and SRY gene. In agarose gel electrophoresis, a normal stallion showed 1 SRY band and 3 AMEL (AMELX, AMELY, and AMELX/AMELY heteroduplex) bands, and a normal mare showed a single AMELX band. In XY-mares, 3 AMEL bands were detected as in a normal stallion, but no SRY band. The present method enables a quick diagnosis for XY-mare prior to cytog...
Mechanisms of persistent NF-kappa B activity in the bronchi of an animal model of asthma.
Journal of immunology (Baltimore, Md. : 1950)    November 9, 2000   Volume 165, Issue 10 5822-5830 doi: 10.4049/jimmunol.165.10.5822
Bureau F, Delhalle S, Bonizzi G, Fiévez L, Dogné S, Kirschvink N, Vanderplasschen A, Merville MP, Bours V, Lekeux P.In most cells trans-activating NF-kappaB induces many inflammatory proteins as well as its own inhibitor, IkappaB-alpha, thus assuring a transient response upon stimulation. However, NF-kappaB-dependent inflammatory gene expression is persistent in asthmatic bronchi, even after allergen eviction. In the present report we used bronchial brushing samples (BBSs) from heaves-affected horses (a spontaneous model of asthma) to elucidate the mechanisms by which NF-kappaB activity is maintained in asthmatic airways. NF-kappaB activity was high in granulocytic and nongranulocytic BBS cells. However, NF...
Colonization of the stratified squamous epithelium of the nonsecreting area of horse stomach by lactobacilli.
Applied and environmental microbiology    October 31, 2000   Volume 66, Issue 11 5030-5034 doi: 10.1128/AEM.66.11.5030-5034.2000
Yuki N, Shimazaki T, Kushiro A, Watanabe K, Uchida K, Yuyama T, Morotomi M.Selective adhesion to only certain epithelia is particularly common among the bacterial members of the indigenous microflora of mammals. We have found that the stratified squamous epithelium of the nonsecreting area of horse stomach is colonized by gram-positive rods. The microscopic features of a dense layer of these bacteria on the epithelium were found to be similar to those reported in mice, rats, and swine. Adhering microorganisms were isolated and identified as Lactobacillus salivarius, L. crispatus, L. reuteri, and L. agilis by DNA-DNA hybridization and 16S rRNA gene sequencing techniqu...
Marginal siderosis and degenerative myelopathy: a manifestation of chronic subarachnoid hemorrhage in a horse with a myxopapillary ependymoma.
Veterinary pathology    October 31, 2000   Volume 37, Issue 5 483-485 doi: 10.1354/vp.37-5-483
Huxtable CR, de Lahunta A, Summers BA, Divers T.Marginal siderosis is recognized in humans as an uncommon clinicopathologic entity characterized by degeneration of neural tissue at the surface of the brain and spinal cord, in association with the accumulation of hemosiderin, and resulting from chronic subarachnoid hemorrhage. The sources of hemorrhage are various and include neoplasms, malformations, cysts, and vasculopathy. Marginal siderosis of the spinal cord due to a myxopapillary ependymoma was diagnosed in a 19-year-old Dutch Warm Blood horse with clinical signs of myelopathy. There is only one previous report of marginal siderosis in...
Cloning of equine chemokines eotaxin, monocyte chemoattractant protein (MCP)-1, MCP-2 and MCP-4, mRNA expression in tissues and induction by IL-4 in dermal fibroblasts.
Veterinary immunology and immunopathology    October 25, 2000   Volume 76, Issue 3-4 283-298 doi: 10.1016/s0165-2427(00)00222-1
Benarafa C, Cunningham FM, Hamblin AS, Horohov DW, Collins ME.We report the cloning of four equine CC chemokines, eotaxin, monocyte chemoattractant protein (MCP)-1, MCP-2 and MCP-4, which show high levels of identity with their respective homologous sequences in other species. Using a multiplex RT-PCR, we have studied the constitutive mRNA expression of these four CC chemokines in skin, lung, liver, spleen, jejunum, colon and kidney of normal adult horses and compared this data with the eosinophil counts in the same samples. We demonstrate that eotaxin mRNA is only expressed in jejunum and colon, where there are large numbers of eosinophils suggesting th...
[Severe combined immunodefiency disease (SCID) in the Arabian horse].
Tijdschrift voor diergeneeskunde    October 24, 2000   Volume 125, Issue 19 577-581 
Don-van't Slot HP, van der Kolk JH.Severe-Combined-Immunodeficiency-Disease (SCID) is discussed with special reference to its pathogenesis, clinical symptoms, pathology, and diagnosis. The disorder has been observed in the USA, Canada, Great Britain, and Australia and is characterized by an autosomal recessive mode of inheritance. The clinical features of the disease seen in Arab foals under 46 days of age are intermittent fever, (adenoviral) pneumonia, and weight loss sometimes associated with diarrhoea. From 1998 on, the SCID gene can be detected in the Netherlands by means of DNA analysis.
What can we learn by growing equine cells in culture?
Equine veterinary journal    October 19, 2000   Volume 32, Issue 5 366-367 doi: 10.2746/042516400777591101
Shepherd PR.No abstract available
Differential localization of protein kinase C isotypes in equine eosinophils and neutrophils.
Journal of leukocyte biology    October 19, 2000   Volume 68, Issue 4 575-582 
Greenaway EC, Cunningham FM, Goode NT.Phorbol esters, which activate protein kinase C (PKC), stimulate equine eosinophil superoxide production and adherence. After showing that superoxide production could be inhibited by the nonselective PKC inhibitors, staurosporine and bisindolymaleimide I, the PKC isotypes in equine eosinophils were characterized, because evidence suggests that individual isotypes may play distinct roles in regulating eosinophil function. Western blots demonstrated that equine eosinophils expressed PKC alpha, beta, delta, epsilon, iota, and zeta. However, unlike the equine neutrophil, the majority of the PKC wa...
Demonstration of equine herpesvirus-1 gene expression in the placental trophoblasts of naturally aborted equine fetuses.
Journal of comparative pathology    October 18, 2000   Volume 123, Issue 2-3 119-125 doi: 10.1053/jcpa.2000.0401
Mukaiya R, Kimura T, Ochiai K, Wada R, Umemura T.Equine herpesvirus-1 (EHV-1) infection was demonstrated in the lung tissue of seven aborted fetuses by immunohistochemical labelling and polymerase chain reaction. The placentas of the fetuses were also examined by non-isotopic in-situ hybridization for the EHV-1 glycoprotein B (gB) gene. Positive hybridization signals were observed in the cytoplasm of trophoblasts, especially in microcotyledons, of all seven placentas, and in villous epithelium of the allantochorion of six placentas. Despite the presence of EHV-1 RNA, EHV-1 antigens were not detected in placentas by immunohistochemical examin...