Analyze Diet

Topic:Microbiology

Microbiology and horses explores the interactions between microorganisms and equine hosts, focusing on the role of bacteria, viruses, fungi, and other microbes in horse health and disease. This field examines the microbial flora present in various equine environments, including the gastrointestinal tract, skin, and respiratory system, and investigates how these microorganisms influence equine physiology and pathology. Research in this area includes studies on microbial infections that affect horses, the development of antimicrobial resistance, and the impact of probiotics and prebiotics on equine health. This page compiles peer-reviewed research studies and scholarly articles that investigate the diversity, dynamics, and implications of microbial communities in horses, as well as the strategies for managing microbial-related diseases.
The core faecal bacterial microbiome of Irish Thoroughbred racehorses.
Letters in applied microbiology    August 19, 2013   Volume 57, Issue 6 492-501 doi: 10.1111/lam.12137
O' Donnell MM, Harris HM, Jeffery IB, Claesson MJ, Younge B, O' Toole PW, Ross RP.In this study, we characterized the gut microbiota in six healthy Irish thoroughbred racehorses and showed it to be dominated by the phyla Firmicutes, Bacteroidetes, Proteobacteria, Verrucomicrobia, Actinobacteria, Euryarchaeota, Fibrobacteres and Spirochaetes. Moreover, all the horses harboured Clostridium, Fibrobacter, Faecalibacterium, Ruminococcus, Eubacterium, Oscillospira, Blautia Anaerotruncus, Coprococcus, Treponema and Lactobacillus spp. Notwithstanding the sample size, it was noteworthy that the core microbiota species assignments identified Fibrobacter succinogenes, Eubacterium copr...
The antimicrobial activity of honey against common equine wound bacterial isolates.
Veterinary journal (London, England : 1997)    August 17, 2013   Volume 199, Issue 1 110-114 doi: 10.1016/j.tvjl.2013.07.003
Carnwath R, Graham EM, Reynolds K, Pollock PJ.Delayed healing associated with distal limb wounds is a particular problem in equine clinical practice. Recent studies in human beings and other species have demonstrated the beneficial wound healing properties of honey, and medical grade honey dressings are available commercially in equine practice. Equine clinicians are reported to source other non-medical grade honeys for the same purpose. This study aimed to assess the antimicrobial activity of a number of honey types against common equine wound bacterial pathogens. Twenty-nine honey products were sourced, including gamma-irradiated and no...
[Diarrhoea and oedema in two show horses after feeding a pelleted supplemental feed for horses according to VDLUFA’s perspective of microbial quality classified as safe for use in horses].
Berliner und Munchener tierarztliche Wochenschrift    August 2, 2013   Volume 126, Issue 7-8 342-349 
Büsing K, Mietke-Hofmann H, Dibbert R, Donandt D, Maier T, Zeyner A.A new batch of a supplemental feed was fed as pellets (diameter 8 mm) to two Warmblood-type horses. One horse developed watery diarrhoea within two days. Pronounced oedema due to hypalbuminemia was seen about ten days later. The feed was replaced by pellets of identical composition and mixing process, but lower diameter (5 mm). After one week of feeding, oedema regressed and faeces were normally formed. At refeeding the larger sized pellets, the symptoms recurred, but now both horses were affected. After a change to the smaller pellets, the horses recovered soon. Water activity (aw-value) of t...
Evaluation of the conjunctival fungal flora and its susceptibility to antifungal agents in healthy horses in Switzerland.
Veterinary ophthalmology    August 2, 2013   Volume 17 Suppl 1 31-36 doi: 10.1111/vop.12088
Voelter-Ratson K, Monod M, Unger L, Spiess BM, Pot SA.To characterize the conjunctival fungal flora and to determine the susceptibility of 2 isolated molds to antifungal drugs in samples of 64 healthy horses from The National Stud in Switzerland. Methods: Conjunctival cytobrush samples were collected from both eyes of 64 ophthalmologically normal horses in August 2012 and subsequently cultured on Sabouraud's agar medium. Growing fungi were identified and counted. Etests or broth microdilution tests for Aspergillus fumigatus and Eurotium amstelodami were carried out to determine antifungal drug sensitivity. These species had previously been detect...
Differential miRNA expression between equine ovulatory and anovulatory follicles.
Domestic animal endocrinology    July 27, 2013   Volume 45, Issue 3 122-125 doi: 10.1016/j.domaniend.2013.06.006
Donadeu FX, Schauer SN.Relatively little is known about the physiological roles of microRNAs (miRNAs) during follicular development. Previous evidence from in vitro studies suggests specific roles for a subset of miRNAs, including miR-21, miR-23a, miR-145, miR-503, miR-224, miR-383, miR-378, miR-132, and miR-212, in regulating ovarian follicle development. The objective of this study was to gain insight on the involvement of these miRNAs during follicle maturation. Follicular fluid was aspirated from dominant follicles (>32 mm) during the ovulatory season (July to October) and the anovulatory season (January to M...
Comparative genome sequencing identifies a prophage-associated genomic island linked to host adaptation of Lawsonia intracellularis infections.
Veterinary research    July 4, 2013   Volume 44, Issue 1 49 doi: 10.1186/1297-9716-44-49
Vannucci FA, Kelley MR, Gebhart CJ.Lawsonia intracellularis is an obligate intracellular bacterium and the causative agent of proliferative enteropathy (PE). The disease is endemic in pigs, emerging in horses and has also been reported in a variety of other animal species, including nonhuman primates. Comparing the whole genome sequences of a homologous porcine L. intracellularis isolate cultivated for 10 and 60 passages in vitro, we identified a 18-kb prophage-associated genomic island in the passage 10 (pathogenic variant) that was lost in the passage 60 (non-pathogenic variant). This chromosomal island comprises 15 genes dow...
Development of a real-time PCR to detect Streptococcus equi subspecies equi.
Equine veterinary journal    June 28, 2013   Volume 46, Issue 1 56-59 doi: 10.1111/evj.12088
North SE, Wakeley PR, Mayo N, Mayers J, Sawyer J.Infection with Streptococcus equi subspecies equi (S. equi) is endemic in the UK. A proportion of horses serve as long-term carriers and act as a reservoir of infection. Detection of these persistently infected horses is difficult using standard culture techniques owing to a lack of sensitivity and overgrowth by contaminating bacteria. In addition, differentiation of this causative bacterium from the closely related S. equi zooepidemicus has made the development of reliable and accurate diagnostic tests difficult. Objective: To develop and validate a sensitive and specific real-time PCR assay ...
Salmonella spp. fecal shedding detected by real-time PCR in competing endurance horses.
Veterinary journal (London, England : 1997)    June 27, 2013   Volume 197, Issue 3 876-877 doi: 10.1016/j.tvjl.2013.05.008
Fielding CL, Meier CA, Magdesian KG, Pusterla N.Fecal shedding of Salmonella spp. was recently documented in 8% of endurance horses presented to equine referral centers for colic. Previous studies have documented fecal shedding of Salmonella spp. in as few as 0.8% of the general horse population, although horses with colic appear to be at higher risk. Fecal Salmonella spp. shedding before and after endurance horse competitions has not been evaluated. Fecal samples were collected from 204 horses during three separate 100 mile endurance competitions. Following incubation in selenite broth, 289 fecal samples were tested by real-time PCR analys...
Comparative analysis of 16S RNA nucleotide sequences of Anaplasma phagocytophilum detected in the blood of horses from various parts of Europe.
Journal of medical microbiology    June 20, 2013   Volume 62, Issue Pt 12 1891-1896 doi: 10.1099/jmm.0.058636-0
Dzięgiel B, Adaszek L, Winiarczyk M, García-Bocanegra I, Carbonero A, Dębiak P, Winiarczyk S.The aim of this study was to conduct a comparative analysis of the 16S rRNA gene fragment nucleotide sequences for Anaplasma phagocytophilum strains detected in the blood of horses from various parts of Europe. The study comprised 234 horses that had had contact with ticks. Using PCR, the genetic material of A. phagocytophilum was identified in the blood of 42 animals. The sequences of the 16S RNA gene amplicons that were obtained from our A. phagocytophilum isolates had 100 % similarity with each other and 96.4-100 % similarity with Anaplasma spp. sequences selected from those available i...
What are the bacteria in the lower airways of athletic horses telling us?
The Veterinary record    June 19, 2013   Volume 172, Issue 24 633-634 doi: 10.1136/vr.f3643
Hughes K.No abstract available
First detection of methicillin-resistant Staphylococcus aureus ST398 and Staphylococcus pseudintermedius ST68 from hospitalized equines in Spain.
Zoonoses and public health    June 17, 2013   Volume 61, Issue 3 192-201 doi: 10.1111/zph.12059
Gómez-Sanz E, Simón C, Ortega C, Gómez P, Lozano C, Zarazaga M, Torres C.Eight coagulase-positive staphylococci from equines with different pathologies obtained between 2005 and 2011 were investigated. Isolates were characterized by different molecular techniques (spa-, agr-, MLST), and clonal relatedness of strains was investigated by ApaI and SmaI PFGE. Anti-microbial resistance and virulence profiles were determined. Six isolates were identified as Staphylococcus aureus, and two as Staphylococcus pseudintermedius. Of these, four isolates were methicillin-resistant S. aureus (MRSA) ST398 and one S. pseudintermedius was mecA positive and typed as ST68. One MRSA ...
Effects of administration of live or inactivated virulent Rhodococccus equi and age on the fecal microbiome of neonatal foals.
PloS one    June 13, 2013   Volume 8, Issue 6 e66640 doi: 10.1371/journal.pone.0066640
Bordin AI, Suchodolski JS, Markel ME, Weaver KB, Steiner JM, Dowd SE, Pillai S, Cohen ND.Rhodococcus equi is an important pathogen of foals. Enteral administration of live, virulent R. equi during early life has been documented to protect against subsequent intrabronchial challenge with R. equi, indicating that enteral mucosal immunization may be protective. Evidence exists that mucosal immune responses develop against both live and inactivated micro-organisms. The extent to which live or inactivated R. equi might alter the intestinal microbiome of foals is unknown. This is an important question because the intestinal microbiome of neonates of other species is known to change over...
Readability and histological biocompatibility of microchip transponders in horses.
Veterinary journal (London, England : 1997)    June 12, 2013   Volume 198, Issue 1 103-108 doi: 10.1016/j.tvjl.2013.04.028
Wulf M, Wohlsein P, Aurich JE, Nees M, Baumgärtner W, Aurich C.Identification of horses by microchip transponder is mandatory within the European Union with only a few exceptions. In this study, the readability of such microchips in 428 horses with three different scanners (A, B and C) and the histological changes at the implantation site in 16 animals were assessed. Identification of microchips differed between scanners (P<0.001), and with 'side of neck' (P<0.001). Scanners A, B and C identified 93.5%, 89.7% and 100% of microchips, respectively, on the 'chip-bearing' side of the neck. From the contralateral side, scanners A, B a...
Biocide and antimicrobial susceptibility of methicillin-resistant staphylococcal isolates from horses.
Veterinary microbiology    June 10, 2013   Volume 166, Issue 1-2 299-303 doi: 10.1016/j.vetmic.2013.05.011
Couto N, Belas A, Tilley P, Couto I, Gama LT, Kadlec K, Schwarz S, Pomba C.The aim of this study was to evaluate the biocide and antimicrobial susceptibility of methicillin-resistant staphylococcal isolates from horses. Fourteen methicillin-resistant staphylococci (MRS) were subjected to an extensive genotype characterization, including SCCmec, dru, spa, PFGE and MLST typing. Antimicrobial susceptibility testing was performed and resistance genes were detected by PCR. Minimum bactericidal concentrations (MBCs) of four biocides [chlorhexidine acetate (CHA), benzalkonium chloride (BAC), triclosan (TCL) and glutaraldehyde (GLA)] were determined following the recommendat...
A new genomic tool, ultra-frequently cleaving TaqII/sinefungin endonuclease with a combined 2.9-bp recognition site, applied to the construction of horse DNA libraries.
BMC genomics    June 1, 2013   Volume 14 370 doi: 10.1186/1471-2164-14-370
Zylicz-Stachula A, Zolnierkiewicz O, Jasiecki J, Skowron PM.Genomics and metagenomics are currently leading research areas, with DNA sequences accumulating at an exponential rate. Although enormous advances in DNA sequencing technologies are taking place, progress is frequently limited by factors such as genomic contig assembly and generation of representative libraries. A number of DNA fragmentation methods, such as hydrodynamic sharing, sonication or DNase I fragmentation, have various drawbacks, including DNA damage, poor fragmentation control, irreproducibility and non-overlapping DNA segment representation. Improvements in these limited DNA scissi...
Yeast-like fungi and yeasts isolated from healthy breeding horses.
Polish journal of veterinary sciences    May 23, 2013   Volume 16, Issue 1 69-76 
Pacyńska JA.Horses are characterized by a very high incidence of mycoses in comparison with most livestock and companion animals. They are highly susceptible to asymptomatic infections caused by yeast-like fungi, but the carrier state may be disrupted under the influence of autogenic and allogenic factors. The above leads to severe organ mycoses, often with an acute form of infection. "Carrier horses" may also act as vectors which transmit potential pathogens between individuals and species. The aim of this study was to identify yeast-like fungi and yeast colonizing the ontocenoses of healthy horses and t...
Diarrhea-associated pathogens, lactobacilli and cellulolytic bacteria in equine feces: responses to antibiotic challenge.
Veterinary microbiology    May 20, 2013   Volume 166, Issue 1-2 225-232 doi: 10.1016/j.vetmic.2013.05.003
Harlow BE, Lawrence LM, Flythe MD.Antibiotics are important to equine medicine, but antibiotic-associated diarrhea (AAD) can lead to poor performance and even mortality. AAD is attributed to disruption of the hindgut microbiota, which permits proliferation of pathogenic microbes. The goal of this study was to evaluate the effects of common antibiotics on cellulolytic bacteria, lactobacilli, and AAD-associated pathogens in the feces of healthy horses. Fifteen horses were assigned to three treatment groups (blocked by age and sex): control (no antibiotics), trimethoprim-sulfadiazine (PO), or ceftiofur (IM). Fecal samples (n=8 pe...
Pathology and diagnostic criteria of Clostridium difficile enteric infection in horses.
Veterinary pathology    May 17, 2013   Volume 50, Issue 6 1028-1036 doi: 10.1177/0300985813489039
Diab SS, Rodriguez-Bertos A, Uzal FA.Clostridium difficile is commonly associated with diarrhea and colitis in humans and other mammals, including horses. To this date, the epidemiologic, microbiologic, clinical, and diagnostic aspects of C. difficile-associated disease (CDAD) in horses have been thoroughly described. However, reports describing the enteric pathology of this disease in horses are limited. This study presents a comprehensive description of the pathologic characteristics of CDAD in 21 horses and discusses the criteria for the diagnosis of the disease. Case selection was based on C. difficile A/B toxins detection (e...
Humoral immune response and spreading of Encephalitozoon cuniculi infection in experimentally infected ponies.
Veterinary parasitology    May 17, 2013   Volume 197, Issue 1-2 1-6 doi: 10.1016/j.vetpar.2013.05.007
Wagnerová P, Sak B, Květoňová D, Maršálek M, Langrová I, Kváč M.A total of 9 (8 stallions and 1 mare) 1 year old ponies were used for the experimental infection caused by Encephalitozoon cuniculi genotype II (10(7) spores per animal). Subsequently, individual horses were slaughtered 7, 14, 21, 28, 35, 42, 49, 56, and 63 days post infection. Immediately after slaughter, tissues samples of stomach, duodenum, jejunum, ileum, caecum, colon, spleen, liver, kidney, bladder, heart, lungs, and brain were sampled. In addition, urine, feces and blood specimens were collected. Enzyme-linked immunosorbent assay was used for determination of humoral immune response and...
Effects of Saccharomyces cerevisiae supplementation on apparent total tract digestibility of nutrients and fermentation profile in healthy horses.
Journal of animal physiology and animal nutrition    May 10, 2013   Volume 97 Suppl 1 115-120 doi: 10.1111/jpn.12043
Mackenthun E, Coenen M, Vervuert I.Supplementation with Saccharomyces cerevisiae (SC) in horses may have some potential to modify microbial populations and thereby improve fibre digestibility. The aim of this study was to investigate the effects of SC on apparent total tract digestibility (ATTD) of nutrients, with a special focus on fibre digestion in healthy horses. The fermentation profile of microbial populations was another focus of interest. Twelve geldings were randomly assigned to three groups. The basal diet consisted of cracked corn (2 g starch/kg body weight [BW]) and hay (1.2 kg/100 kg BW). During adaptation (3 weeks...
Species of Candida as a component of the nasal microbiota of healthy horses.
Medical mycology    May 8, 2013   Volume 51, Issue 7 731-736 doi: 10.3109/13693786.2013.777858
Cordeiro Rde A, Bittencourt PV, Brilhante RS, Teixeira CE, Castelo-Branco Dde S, Silva ST, De Alencar LP, Souza ER, Bandeira Tde J, Monteiro AJ....Respiratory infections are a common problem among equines and occur with variable rates of morbidity and mortality. Although some fungal species are considered primary agents of respiratory tract infections in several mammals, their relevance in respiratory diseases of equines is frequently neglected. In the present study, we performed an active search for Candida spp. in the nasal cavity of horses. The presence of Candida spp. was investigated through the use of nasal swabs that were streaked on culture media. These yeasts were identified through physiological testing and their in vitro antif...
Furry pet allergens, fungal DNA and microbial volatile organic compounds (MVOCs) in the commercial aircraft cabin environment.
Environmental science. Processes & impacts    May 7, 2013   Volume 15, Issue 6 1228-1234 doi: 10.1039/c3em30928b
Fu X, Lindgren T, Guo M, Cai GH, Lundgren H, Norbäck D.There has been concern about the cabin environment in commercial aircraft. We measured cat, dog and horse allergens and fungal DNA in cabin dust and microbial volatile organic compounds (MVOCs) in cabin air. Samples were collected from two European airline companies, one with cabins having textile seats (TSC) and the other with cabins having leather seats (LSC), 9 airplanes from each company. Dust was vacuumed from seats and floors in the flight deck and different parts of the cabin. Cat (Fel d1), dog (Can f1) and horse allergens (Equ cx) were analyzed by ELISA. Five sequences of fungal DNA we...
Streptococcus equi subsp. zooepidemicus isolates from equine infectious endometritis belong to a distinct genetic group.
Veterinary research    April 18, 2013   Volume 44, Issue 1 26 doi: 10.1186/1297-9716-44-26
Rasmussen CD, Haugaard MM, Petersen MR, Nielsen JM, Pedersen HG, Bojesen AM.Streptococcus equi subsp. zooepidemicus is the pathogen most commonly isolated from the uterus of mares. S. zooepidemicus is an opportunistic pathogen and part of the resident flora in the caudal reproductive tract. The aim of this study was to investigate whether a genotypically distinct subpopulation of S. zooepidemicus is associated with endometritis in the mare, by genotyping and comparing uterine S. zooepidemicus strains with isolates from the vagina and clitoral fossa. Mares with (n=18) or without (n=11) clinical symptoms of endometritis were included. Uterine samples were obtained using...
The role of polyphosphates in the sequestration of matrix metalloproteinases.
International wound journal    April 17, 2013   Volume 12, Issue 1 89-99 doi: 10.1111/iwj.12058
McCarty SM, Percival SL, Clegg PD, Cochrane CA.This study outlines the potential of a novel therapeutic dressing for the management of chronic wounds. The dressing incorporates polyphosphate, a non toxic compound with a number of beneficial characteristics in terms of wound healing, in a foam matrix. The aim of this study was to identify the potential of polyphosphate incorporated in the foam dressing to sequester the activity of matrix metalloproteinases (MMPs) and proteases derived from Pseudomonas aeruginosa. Methods used included gelatin zymography and milk-casein agar plate analysis. Results have shown that this dressing is effectivel...
Corynebacterium uterequi sp. nov., a non-lipophilic bacterium isolated from urogenital samples from horses.
Veterinary microbiology    April 9, 2013   Volume 165, Issue 3-4 469-474 doi: 10.1016/j.vetmic.2013.03.025
Hoyles L, Ortman K, Cardew S, Foster G, Rogerson F, Falsen E.Three strains of a Gram-positive, catalase-positive, fermentative, non-lipophilic, previously unknown bacterium were isolated from urogenital samples taken from mares in Scotland (M401624/00/1) and Sweden (VM 2074 and VM 2298(T)). All were deposited with the CCUG with tentative identifications as Corynebacterium spp. The strains were characterized using a polyphasic taxonomic approach. Biochemically, the strains were very similar to each other, but phylogenetically distinct from Corynebacterium species with validly published names (≤95% sequence similarity). rpoB gene sequence data confirmed...
Development of the genital microflora in stallions used for artificial insemination throughout the breeding season.
Animal reproduction science    March 29, 2013   Volume 139, Issue 1-4 53-61 doi: 10.1016/j.anireprosci.2013.03.009
Pasing SS, Aurich C, von Lewinski M, Wulf M, Krüger M, Aurich JE.An important factor influencing stallion fertility is the microbial contamination of semen. Aims of this study were to investigate changes in the microbiological population of the genital mucosa and semen in artificial insemination stallions (n=16) from before to after one breeding season (February-August). MALDI-TOF-MS (matrix assisted laser desorption/ionization time-of-flight mass spectrometry) was used for identification of microbial agents. For bacteriology, swabs from the urethral opening, urethral fossa and penile sheath as well as semen were collected at 4-week-intervals. For semen mot...
Bacteria isolated from field cases of equine amnionitis and fetal loss.
Australian veterinary journal    March 26, 2013   Volume 91, Issue 4 138-142 doi: 10.1111/avj.12022
Todhunter KH, Muscatello G, Blishen AJ, Chicken C, Perkins NR, Gilkerson JR, Begg AP.A series of unusual abortions occurred in Thoroughbred and Quarterhorse mares in the Hunter Valley region of New South Wales from mid-March to November 2004. The initial link between early cases was the microbiological culture of atypical environmental coryneforms from the stomach contents and/or lungs of fetuses aborted on different properties. Methods: The unique pathologic lesions were described with a case definition and the term 'equine amnionitis and fetal loss' (EAFL) was established. Results: The causal factor was the ingestion of the processionary caterpillar (Ochrogaster lunifer). Ba...
Comparison of microbial populations in the small intestine, large intestine and feces of healthy horses using terminal restriction fragment length polymorphism.
BMC research notes    March 12, 2013   Volume 6 91 doi: 10.1186/1756-0500-6-91
Schoster A, Arroyo LG, Staempfli HR, Weese JS.The composition of the microbiota of the equine intestinal tract is complex. Determining whether the microbial composition of fecal samples is representative of proximal compartments of the digestive tract could greatly simplify future studies. The objectives of this study were to compare the microbial populations of the duodenum, ileum, cecum, colon and rectum (feces) within and between healthy horses, and to determine whether rectal (fecal) samples are representative of proximal segments of the gastrointestinal tract. Intestinal samples were collected from ten euthanized horses. 16S rRNA gen...
Clinical and molecular features of methicillin-resistant, coagulase-negative staphylococci of pets and horses.
The Journal of antimicrobial chemotherapy    February 20, 2013   Volume 68, Issue 6 1256-1266 doi: 10.1093/jac/dkt020
Kern A, Perreten V.To determine the antibiotic resistance and fingerprint profiles of methicillin-resistant coagulase-negative staphylococci (MRCoNS) from animal infections among different practices and examine the history of antibiotic treatment. Methods: Isolates were identified by mass spectrometry and tested for antimicrobial resistance by broth dilution, microarrays and sequence analysis of the topoisomerases. Diversity was assessed by PFGE, icaA PCR and staphylococcal cassette chromosome mec (SCCmec), arginine catabolic mobile element (ACME) and multilocus sequence typing. Clinical records were examined re...
Technical note: fatty acids and purine profile of cecum and colon bacteria as indicators of equine microbial metabolism.
Journal of animal science    February 13, 2013   Volume 91, Issue 4 1753-1757 doi: 10.2527/jas.2011-4892
Santos AS, Jerónimo E, Ferreira LM, Rodrigues MA, Bessa RJ.The potential use of odd- and branched-chain fatty acids (OBCFA) and purine bases (PB) as microbial markers in the equine hindgut was studied. For this purpose, feed particles adherent bacteria [solid associated bacteria (SAB)] and planktonic bacteria [liquid associated bacteria (PAB)] were isolated from total cecum and colon contents of 8 healthy, crossbred horses (9 ± 3 yr). Horses were fasted for 12 to 15 h before slaughter, and the cecum and colon were identified and clamped in their extremities to avoid mixing of digesta contents. The total cecum or colon contents was collected into ther...
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