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Topic:Molecular biology

Molecular biology in horses involves the study of molecular processes and genetic mechanisms that underpin equine physiology and health. This field encompasses the analysis of DNA, RNA, proteins, and other biomolecules to understand gene expression, genetic variation, and cellular functions in horses. Techniques such as genomic sequencing, gene expression profiling, and molecular diagnostics are employed to explore topics like hereditary diseases, performance traits, and immune responses in equines. This page assembles peer-reviewed research studies and scholarly articles that investigate the molecular biology of horses, focusing on genetic research, molecular techniques, and their applications in equine science.
Mitochondrial control region and 12S rRNA variation in Przewalski’s horse (Equus przewalskii).
Animal genetics    January 12, 1999   Volume 29, Issue 6 456-459 doi: 10.1046/j.1365-2052.1998.296380.x
Oakenfull EA, Ryder OA.Variation in the control region and the 12S rRNA gene of all surviving mitochondrial lineages of Przewalski's horse was investigated. Variation is low despite the present day population being descended from 13 individuals probably representing animals from three different regions of its range. Phylogenetic comparison of these sequences, with sequences for the domestic horse, does not resolve the ancestral status of either horse.
[The intraspecific differentiation of Przhewalski’s horse and the domestic horse by 5 molecular genetic markers].
TSitologiia i genetika    January 8, 1999   Volume 32, Issue 3 97-103 
Glazko VI, Oblap RV, Iasinetskaia NA, Kushnir AN.Analysis of albumin, transferrin, receptor to vitamin D, esterase, alpha 1-beta glycoprotein polymorphisms in Przhewalski's horse, Orlov's and Russian trotters, Guzul and Yakutian domestic horse breeds was carried out. The data about similarity of intraspecies differentiation of Przewalski's horse's populations and interbreed distinctions were obtained. Locus-specific particularities of genetic structures of investigated animal groups were revealed.
Organisation of the equine immunoglobulin constant heavy chain genes. II. Equine cgamma genes.
Veterinary immunology and immunopathology    January 8, 1999   Volume 66, Issue 3-4 273-287 doi: 10.1016/s0165-2427(98)00182-2
Overesch G, Wagner B, Radbruch A, Leibold W.The number of immunoglobulin G constant heavy chain genes (cgamma genes) varies broadly among mammalian species, reflecting structural and functional differences between expressed immunoglobulin G (IgG) isotypes and allotypes. Up to now equine IgG isotypes have been defined only at the biochemical and serological level. It is still not clear how many IgG isotypes exist in horses and whether there are any allotypes. Here, we describe the isolation and characterisation of equine cgamma genes. An equine genomic lambda phage library was screened with a human cgamma4 probe. Cross-hybridising equine...
Conformationally restricted carbamate inhibitors of horse serum butyrylcholinesterase.
Bioorganic & medicinal chemistry letters    January 5, 1999   Volume 8, Issue 19 2747-2750 doi: 10.1016/s0960-894x(98)00484-3
Lin G, Chen GH, Ho HC.Conformationally restricted carbamate inhibitors, exo-2-norbornyl-N-butylcarbamate (1), endo-2-norbornyl-N-butylcarbamate (2), l-adamantyl-N-butylcarbamate (3), and 2-adamantyl-N-butylcarbamate (4) as active site-directed irreversible inhibitors of horse serum butyrylcholinesterase are investigated for values of the dissociation constant (KI), the carbamylation constant (k2), and the bimolecular rate constant (ki). Compound 1 is the most potent inhibitor of the enzyme and the values of KI and ki are 20 nM and 1.1 x 10(5) M-1sec-1, respectively.
Production of gelatinases and tissue inhibitors of matrix metalloproteinases by equine ovarian stromal cells In vitro.
Biology of reproduction    December 22, 1998   Volume 60, Issue 1 1-7 doi: 10.1095/biolreprod60.1.1
Song L, Porter DG, Coomber BL.Matrix metalloproteinases (MMPs) and tissue inhibitors of MMPs (TIMPs) play very important roles in extracellular matrix (ECM) remodeling in ovarian follicle growth and ovulation. Equine follicles are embedded in cortex that is at the center of the ovary, and they must expand/emigrate to the fossa, the only site in the ovary for ovulation. Therefore, equine ovarian stromal cells (EOSC) are probably involved in ECM remodeling during follicle growth. This study examined whether cultured EOSC synthesize gelatinases and TIMPs, molecules essential for ECM remodeling in other systems. Results showed...
Molecular characteristics of equine stromelysin and the tissue inhibitor of metalloproteinase 1.
American journal of veterinary research    December 19, 1998   Volume 59, Issue 12 1557-1562 
Richardson DW, Dodge GR.To clone the entire coding sequence of equine matrix metalloproteinase-3 (MMP-3, stromelysin) and tissue inhibitor of metalloproteinase-1 (TIMP-1) and compare their nucleotide and amino acid sequences with those of MMP-3 and TIMP-1 from other species. Methods: Articular cartilage harvested from the joints of 4 foals, 2 yearlings, and 3 adult horses. Methods: A cDNA library was constructed from mRNA extracted from equine chondrocytes. The library was screened and clones selected that contained the cDNA for MMP-3 and TIMP-1. The cDNA was sequenced and the nucleotide and deduced amino acid sequen...
An equine herpesvirus 1 mutant with a lacZ insertion between open reading frames 62 and 63 is replication competent and causes disease in the murine respiratory model.
Archives of virology    December 18, 1998   Volume 143, Issue 11 2215-2231 doi: 10.1007/s007050050453
Csellner H, Walker C, Love DN, Whalley JM.An equine herpesvirus 1 (EHV-1) mutant was constructed by inserting a lacZ expression cassette into the intergenic region upstream of gene 62 (glycoprotein L; gL) and downstream of gene 63 (a homologue of the herpes simplex virus transcriptional activator ICP0). The recombinant lacZ62/63-EHV-1 had similar growth kinetics in cell culture to those of the parental wild type (wt) virus, with indistinguishable cytopathic effects and plaque morphology. Reverse transcriptase PCR confirmed that the lacZ insertion did not interfere with transcription of gL and immunoblot analysis indicated there was no...
The 2.03 signal as an indicator of dinitrosyl-iron complexes with thiol-containing ligands.
Nitric oxide : biology and chemistry    December 16, 1998   Volume 2, Issue 4 224-234 doi: 10.1006/niox.1998.0180
Vanin AF, Serezhenkov VA, Mikoyan VD, Genkin MV.The parameters of EPR signal from dinitrosyl-iron complexes (DNIC) with bovine serum albumin (BSA), horse hemoglobin (Hb), and apometallothionein (apo-Mt) of horse kidney incorporating one (BSA, Hb) or two thiol-containing ligands (apo-Mt) were compared. The EPR signal from DNIC-BSA was characterized by the rhombic symmetry of g tensor at room temperature of signal recording (ambient temperature) or at 77K in the solution frozen in the presence of glycerol. In freezing of the solution in the absence of glycerin, under the exposure of DNIC-BSA to negatively charged sodium dodecyl sulfate (SDS) ...
Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes.
Journal of molecular evolution    December 16, 1998   Volume 47, Issue 6 772-783 doi: 10.1007/pl00006436
Oakenfull EA, Clegg JB.Sequences of the alpha1, alpha2 and theta globin genes from six equid species have been determined to investigate relationships within the genus Equus. Analyses using standard phylogenetic methods, or an approach designed to account for the effects of gene conversion between the alpha genes, gave broadly similar results and show that the horses diverged from the zebra/ass ancestor approximately 2.4 million years ago and that the zebra and ass species arose in a rapid radiation approximately 0.9 million years ago. These results from the alpha genes are corroborated by theta gene data and are in...
Serologic and molecular characterization of an abortigenic strain of equine arteritis virus isolated from infective frozen semen and an aborted equine fetus.
Journal of the American Veterinary Medical Association    December 5, 1998   Volume 213, Issue 11 1586-1570 
Balasuriya UB, Evermann JF, Hedges JF, McKeirnan AJ, Mitten JQ, Beyer JC, McCollum WH, Timoney PJ, MacLachlan NJ.A virus isolated from an aborted equine fetus was determined to be antigenically distinct from several other strains of equine arteritis virus (EAV) by use of a neutralization assay with a large panel of neutralizing monoclonal antibodies. The virus was readily neutralized by polyclonal equine anti-EAV serum. Comparative nucleotide and amino acid sequence analyses indicated that the virus (WA97) isolated from the aborted fetus was virtually identical to a virus (S1971) isolated from imported semen used to inseminate another mare on the farm. Phylogenetic analysis indicated that the WA97/S1971 ...
Immunohistochemical localization of the spermadhesin AWN-1 in the equine male genital tract.
Anatomia, histologia, embryologia    November 18, 1998   Volume 27, Issue 5 351-353 doi: 10.1111/j.1439-0264.1998.tb00206.x
Hoshiba H, Sinowatz F.Spermadhesins are proteins with various functions in sperm capacitation and zona pellucida binding. In this study the cellular localization of the spermadhesin AWN-1 has been examined in the equine male genital tract. Results obtained by immunohistochemical methods reveal that in the horse AWN-1 is synthesized in spermatogonia, in the rete testis, the ductus epididymidis and the seminal vesicles. These findings indicate that the cellular origin of spermadhesins is species-specific.
Equine infectious anemia virus Gag polyprotein late domain specifically recruits cellular AP-2 adapter protein complexes during virion assembly.
Journal of virology    November 13, 1998   Volume 72, Issue 12 10218-10221 doi: 10.1128/JVI.72.12.10218-10221.1998
Puffer BA, Watkins SC, Montelaro RC.We have identified an interaction between the equine infectious anemia virus (EIAV) late assembly domain and the cellular AP-2 clathrin-associated adapter protein complex. A YXXL motif within the EIAV Gag late assembly domain was previously characterized as a sequence critical for release of assembling virions. We now show that this YXXL sequence interacts in vitro with the AP-50 subunit of the AP-2 complex, while the functionally interchangeable late assembly domains carried by the Rous sarcoma virus p2b protein and human immunodeficiency virus type 1 p6 protein, which utilize PPPY and PTAPP ...
Cloning and characterization of the equine F18 gene, which has a novel exon.
Animal genetics    November 4, 1998   Volume 29, Issue 5 381-384 doi: 10.1046/j.1365-2052.1998.295356.x
Tozaki T, Hirota K, Mashima S, Tomita M, Mukoyama H.A genomic clone isolated from an equine genomic library probed with an oligonucleotide (CAG)10 showed high sequence similarity to the human F18 gene and was tentatively named equine F18 gene. Because the human F18 gene is expressed in many tissues, we examined whether this equine clone was also expressed in equine tissues. The cDNA encoding equine F18 was obtained by the reverse transcriptase-polymerase chain reaction (RT-PCR) from equine thymus. The nucleotide sequence of the equine F18 cDNA (1940 bp) was determined and contained both the ATG initiation codon and a poly(A) sequence. The cDNA ...
Description of a new Neospora species (Protozoa: Apicomplexa: Sarcocystidae).
The Journal of parasitology    October 30, 1998   Volume 84, Issue 5 983-991 
Marsh AE, Barr BC, Packham AE, Conrad PA.Neospora hughesi n. sp. was isolated from the central nervous system tissue of an adult equine (Equus caballus) from California. The tachyzoites are crescent-shaped, approximately 2 x 5 microm (1.8-3.0 x 4.0-7.0 microm), with characteristic apical complex structures consisting of an anterior polar ring, conoid, numerous rhoptries filled with a uniform electron-dense material, and 22 microtubules extending posteriorly from the polar ring. Comparison of N. hughesi to canine and bovine Neospora caninum isolates showed phenotypic differences in immunoreactive proteins. Molecular analysis of the sm...
Preliminary characterisation of extracellular serine proteases of Dermatophilus congolensis isolates from cattle, sheep and horses.
Veterinary microbiology    October 29, 1998   Volume 62, Issue 4 321-335 doi: 10.1016/s0378-1135(98)00223-5
Ambrose NC, Mijinyawa MS, Hermoso de Mendoza J.Dermatophilus congolensis is a filamentous branching actinomycete that causes dermatophilosis, an exudative dermatitis in ruminants. The pathogenesis of this disease is poorly understood and virulence factors of D. congolensis have not been characterised. Culture filtrate (CF) of 14 D. congolensis isolates from cattle, 15 from sheep and four from horses were examined for proteolytic activity using azocasein as a non-specific substrate. The isolates were from a variety of geographical locations. All the isolates examined produced extracellular proteolytic activity. CF from 24 and 48 h cultures ...
Phenytoin alters transcript levels of hormone-sensitive lipase in muscle from horses with hyperkalemic periodic paralysis.
Archives of biochemistry and biophysics    October 24, 1998   Volume 358, Issue 2 264-270 doi: 10.1006/abbi.1998.0871
Yudkowsky ML, Beech J, Fletcher JE.In equine hyperkalemic periodic paralysis (HyperPP), there is evidence suggesting that the primary defect in the sodium channel is associated with a secondary alteration in triacylglycerol-associated fatty acid metabolism (TAFAM) in skeletal muscle. Furthermore, TAFAM may be involved in the therapeutic action of phenytoin. The effects of phenytoin treatment on the transcript levels of three key proteins in TAFAM, hormone sensitive lipase (HSL), carnitine palmitoyltransferase (CPT), and fatty acid binding protein (FABP), were examined. These transcripts were quantitated by competitive reverse t...
Pressure and temperature dependence of enantioselective excited-state quenching of chiral Tb(III) and Eu(III) tris(pyridine-2,6-dicarboxylate) chelates by various C-type ferricytochromes.
Enantiomer    October 23, 1998   Volume 3, Issue 2 95-102 
Meskers SC, Dekkers HP.For mitochondrial ferricytochrome c from horse, cow and tuna and for bacterial cytochrome c-550 from Paracoccus versutus, the pressure and temperature dependence of their quenching of racemic Tb(DPA)3(3-) and Eu(DPA)3(3-) (DPA = pyridine-2,6-dicarboxylate) luminescence in aqueous solution is investigated. Of these energy transfer reactions the activation volumes (delta V#) and energies (Ea) are determined for the ranges P = 0-3 kbar and T = 15-40 degrees C. For the lambda enantiomers of Tb(DPA)3(3-) and Eu(DPA)3(3-), delta V# and Ea are almost the same for all proteins: 0.4 < or = delta V# < o...
Genetic variation and phylogenetic analysis of open reading frames 3 and 4 of various equine arteritis virus isolates.
Advances in experimental medicine and biology    October 23, 1998   Volume 440 813-819 doi: 10.1007/978-1-4615-5331-1_106
Archambault D, Laganière G, St-Laurent G.The genetic variation in equine arteritis virus (EAV) nonstructural (NS) protein-encoding open reading frames (ORF) 3 and 4 genes was investigated. Nucleotide and deduced amino acid sequences from seven different EAV isolates (one European, one American and five Canadian isolates) and the Arvac vaccine strain were compared with those of the Bucyrus reference strain. ORF 3 nucleotide and amino acid sequence identities amongst these isolates (including the Arvac vaccine strain) and the Bucyrus reference strain ranged from 85.6 to 98.8%, and 85.3 to 98.2%, respectively, whereas ORF 4 nucleotide a...
Structures of buffalo and mare lactoferrins. Similarities, differences, and flexibility.
Advances in experimental medicine and biology    October 22, 1998   Volume 443 15-21 doi: 10.1007/978-1-4757-9068-9_2
Sharma AK, Karthikeyan S, Sharma S, Yadav S, Srinivasan A, Singh TP.Lactoferrin (Lf), an iron binding glycoprotein found in the external secretions and neutrophilic leucocytes of mammals, is thought to be responsible for primary defence against microbial infection, mainly as a result of lactoferrin sequestration of iron required for microbial growth (Weinberg, 1978). Many other functions have been attributed to lactoferrin, including immunomodulation and cell growth regulation (Lbnnerdal & lyer, 1995). The lactoferrin has molecular mass of 80 kDa. The protein folds into two globular lobes, the N-lobe comprising the N-terminal half of the polypeptide chain ...
Assignment of the horse progesterone receptor (PGR) and estrogen receptor (ESR1) genes to horse chromosomes 7 and 31, respectively, by in situ hybridization.
Cytogenetics and cell genetics    October 9, 1998   Volume 82, Issue 1-2 110-111 doi: 10.1159/000015079
Lear TL, Adams MH, Sullivan ND, McDowell KJ, Bailey E.No abstract available
Expression of inhibin alpha-subunit in horse testis.
The Journal of veterinary medical science    October 9, 1998   Volume 60, Issue 8 937-942 doi: 10.1292/jvms.60.937
Fujimura S, Hondo E, Kobayashi T, Yamanouchi K, Inoue N, Nagata S, Watanabe G, Taya K, Kitamura N, Yamada J.Inhibin is believed to play roles in the pituitary secretion of FSH and in the paracrine regulation of testicular function. Although it has been generally accepted that inhibin is produced in Sertoli cells, there was a recent evidence for the localization of inhibin in Leydig cells of primates, rat and sheep. However, there is no report on the expression of inhibin in the adult horse testis. Therefore, using immunohistochemistry, western blotting and in situ hybridization techniques, the present study examined inhibin alpha-subunit (Ih-alpha) expression in the adult horse testis. For the detec...
Equilibrium and kinetics of the folding of equine lysozyme studied by circular dichroism spectroscopy.
Journal of molecular biology    October 8, 1998   Volume 283, Issue 1 265-277 doi: 10.1006/jmbi.1998.2100
Mizuguchi M, Arai M, Ke Y, Nitta K, Kuwajima K.The equilibrium unfolding and the kinetics of unfolding and refolding of equine lysozyme, a Ca2+-binding protein, were studied by means of circular dichroism spectra in the far and near-ultraviolet regions. The transition curves of the guanidine hydrochloride-induced unfolding measured at 230 nm and 292.5 nm, and for the apo and holo forms of the protein have shown that the unfolding is well represented by a three-state mechanism in which the molten globule state is populated as a stable intermediate. The molten globule state of this protein is more stable and more native-like than that of alp...
Monitoring the conformational flexibility of cytochrome c at low ionic strength by 1H-NMR spectroscopy.
European journal of biochemistry    October 6, 1998   Volume 256, Issue 2 271-278 doi: 10.1046/j.1432-1327.1998.2560271.x
Banci L, Bertini I, Reddig T, Turano P.Horse heart cytochrome c at pH 7 and low ionic strength is present as two conformers, as evidenced by 1H-NMR spectroscopy. The two structures have been calculated using NOE and pseudocontact shift constraints. They have the same folding patterns and are essentially equal, within the rmsd of the families. The two average structures have rmsd values of 0.049 nm and 0.093 nm for the backbone and the heavy atoms, respectively. Such a difference has been analyzed through a detailed analysis of the NOEs. It appears that the species at low ionic strength differs from the species present at high ionic...
Equine TIMP-1 and TIMP-2: identification, activity and cellular sources.
Equine veterinary journal    October 3, 1998   Volume 30, Issue 5 416-423 doi: 10.1111/j.2042-3306.1998.tb04512.x
Clegg PD, Coughlan AR, Carter SD.Matrix metalloproteinases (MMPs) are the main enzymes involved in connective tissue turnover. Regulation of MMPs is achieved by controlling production, activation of the pro-enzymes together with the presence of inhibitors, such as, tissue inhibitors of metalloproteinases (TIMPS). The presence of TIMPs in equine synovial fluid was assessed by the ability of the fluid to inhibit equine MMP-9 activity using a gelatin degradation ELISA. The cellular source of the TIMPs was determined using culture supernatants of resident articular cells (chondrocytes and synovial fibroblasts) and invading inflam...
Equine CRISP-3: primary structure and expression in the male genital tract.
Biochimica et biophysica acta    September 28, 1998   Volume 1387, Issue 1-2 206-216 doi: 10.1016/s0167-4838(98)00122-8
Schambony A, Gentzel M, Wolfes H, Raida M, Neumann U, Töpfer-Petersen E.Although originally described in the male rodent genital tract, cysteine-rich secretory proteins (CRISPs) are expressed in a variety of mammalian tissue and cell types. The proteins of the male genital tract have been observed associated to spermatozoa and are believed to play a role in mammalian fertilization. Here we describe the identification and primary structure of the first equine member of the CRISP family. Equine CRISP-3 is transcribed and expressed in the stallion salivary gland, in the ampulla and the seminal vesicle. It displays all 16 conserved cysteine residues and shows 82% homo...
[Differentiation of domestic horse and Przewalskis horse using various DNA sequences].
Genetika    September 28, 1998   Volume 34, Issue 7 996-999 
Glazko VI, Zelenaia LB.The electrophoretic mobility of seven erythrocyte enzymes and spectra of fragments amplified by RAPD-PCR with primers UBC-85 and UBC-126 were comparatively analyzed in domestic horse and Przewalski's horse. All tested genetic markers were classified into two groups differing in their involvement in differentiation of the two closely related horse species. Markers from different groups differed neither in their type (a polymorphic protein or an amplification product) nor in their biochemical role (for enzymes).
Carboxymethylated phosphatidylethanolamine in mitochondrial membranes of mammals–evidence for intracellular lipid glycoxidation.
European journal of biochemistry    September 17, 1998   Volume 255, Issue 3 685-689 doi: 10.1046/j.1432-1327.1998.2550685.x
Pamplona R, Requena JR, Portero-Otín M, Prat J, Thorpe SR, Bellmunt MJ.The non-enzymatic modification of aminophospholipids with lipoperoxidation-derived aldehydes and glycoxidation-derived products have been reported previously. However, it remains unknown whether intracellular membranes are damaged by these glycoxidation-derived products. To investigate this issue, we tested whether aminophospholipids from mitochondrial membranes are damaged by glycoxidative stress the mitochondrion being identified as the major site of reactive-species production in the cell. We have used a selected-ion-monitoring/gas-chromatography/mass-spectrometry assay for carboxymethyleth...
The S2 gene of equine infectious anemia virus is dispensable for viral replication in vitro.
Journal of virology    September 12, 1998   Volume 72, Issue 10 8344-8348 doi: 10.1128/JVI.72.10.8344-8348.1998
Li F, Puffer BA, Montelaro RC.Equine infectious anemia virus (EIAV) contains the simplest genome among lentiviruses in that it encodes only three putative regulatory genes (S1, S2, S3) in addition to the canonical gag, pol, and env genes, presumably reflecting its limited tropism to cells of monocyte/macrophage lineage. Tat and Rev functions have been assigned to S1 and S3, respectively, but the specific function for the S2 gene has yet to be determined. Thus, the function of S2 in virus replication in vitro was investigated by using an infectious molecular viral clone, EIAVUK. Various EIAVUK mutants lacking S2 were constr...
Six new cosmid derived and physically mapped equine dinucleotide repeat microsatellites.
Animal genetics    August 28, 1998   Volume 29, Issue 3 236-238 doi: 10.1046/j.1365-2052.1998.00236.x
Marti E, Breen M, Fischer P, Swinburne J, Binns MM.No abstract available
Unique progastrin processing in equine G-cells suggests marginal tyrosyl sulfotransferase activity.
European journal of biochemistry    August 26, 1998   Volume 255, Issue 2 432-438 doi: 10.1046/j.1432-1327.1998.2550432.x
Johnsen AH, Sandin A, Rourke IJ, Bundgaard JR, Nilsson G, Rehfeld JF.Previous studies have indicated that equine G-cell processing of progastrin differs from that of other species. Since the difference may be due to structural features, we have identified equine gastrin-17 and -34 (