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Topic:Polymerase Chain Reaction

Polymerase Chain Reaction (PCR) is a molecular biology technique used to amplify specific DNA sequences, allowing for detailed genetic analysis in horses. This method enables the detection and quantification of genetic material, facilitating research in areas such as genetic disorders, infectious diseases, and population genetics in equine species. PCR applications in horses include identifying pathogens, verifying parentage, and studying genetic variations. The technique's sensitivity and specificity make it a valuable tool in equine veterinary diagnostics and research. This page compiles peer-reviewed research studies and scholarly articles that explore the applications, methodologies, and advancements of PCR in equine science.
HybProbes-based real-time PCR assay for rapid detection of equine herpesvirus type 2 DNA.
Polish journal of veterinary sciences    December 12, 2012   Volume 15, Issue 3 411-416 doi: 10.2478/v10181-012-0064-9
Osińska E, Golke A, Słońska A, Cymerys J, Bańbura MW, Dzieciatkowski T.Equid herpesvirus type 2 (EHV-2) together with equid herpesvirus type 5 are members of Gammaherpesvirinae subfamily, genus Rhadinovirus. EHV-2 is one of major agents causing diseases of horses common worldwide. A possible role of EHV-2 in reactivating latent equid herpesvirus type-1 has been suggested, because reactivation of latent EHV-1 was always accompanied by EHV-2 replication. Variety techniques, including cell culture, PCR and its modifications, have been used to diagnose EHV-2 infections. The aim of this study was to develop, optimize and determine specificity of real-time PCR (qPCR) f...
Fungal polymerase chain reaction testing in equine ulcerative keratitis.
Veterinary ophthalmology    December 10, 2012   Volume 16, Issue 5 341-351 doi: 10.1111/vop.12004
Zeiss C, Neaderland M, Yang FC, Terwilliger G, Compton S.To assess the diagnostic utility of fungal polymerase chain reaction (PCR) in forty-three horses with naturally acquired corneal ulcers presenting to a private practice. Methods: Routine evaluation of cytologic, histologic, and microbiologic samples was performed. Two PCR approaches were compared - generic and specific fungal nested PCR followed by sequencing and quantitative PCR (qPCR). PCRs were applied to pure control fungal cultures, corneal tissue from ulcerated eyes and in a subset of 9 horses, to swabs from contralateral normal eyes. Results: The expected fungus was identified by nested...
The presence and gene expression of bovine papillomavirus in the peripheral blood and semen of healthy horses.
Transboundary and emerging diseases    December 4, 2012   Volume 61, Issue 4 329-333 doi: 10.1111/tbed.12036
Silva MA, Silva KM, Jesus AL, Barros LO, Corteggio A, Altamura G, Borzacchiello G, Freitas AC.Papillomavirus (PV) are double-stranded DNA viruses that can cause both benignant and malignant tumours in mammals. Twelve genotypes of bovine papillomavirus (BPV1-12) have been identified so far. The presence of BPV1 and 2 has been found in the body fluids of cattle and horses. The aim of this study is to investigate the presence of BPV DNA and the expression of viral genes in the blood and sperm cells of healthy horses using PCR and RT-PCR. BPV-1 or 2 was detected in 14 of 70 blood samples (20%) and in 11 of 31 semen samples (35%). In five of fourteen blood samples, the E5 expression tested ...
Efficacy of imidocarb dipropionate in eliminating Theileria equi from experimentally infected horses.
Veterinary journal (London, England : 1997)    November 28, 2012   Volume 196, Issue 3 541-546 doi: 10.1016/j.tvjl.2012.10.025
Grause JF, Ueti MW, Nelson JT, Knowles DP, Kappmeyer LS, Bunn TO.Theileria equi, one of the causative agents of equine piroplasmosis, is endemic in many regions of the world but is considered a 'foreign' animal disease in the USA. In an effort to prevent the importation of T. equi, stringent serological screening of horses is practiced prior to entry to the USA. Current regulatory options available where horses are found to be infected include permanent quarantine with or without chemotherapy, repatriation, or euthanasia. Chemotherapeutics that eliminate infection and subsequently transmission risk are critical in the management of infected horses. In this ...
Profound re-organization of cell surface proteome in equine retinal pigment epithelial cells in response to in vitro culturing.
International journal of molecular sciences    October 31, 2012   Volume 13, Issue 11 14053-14072 doi: 10.3390/ijms131114053
Szober CM, Hauck SM, Euler KN, Fröhlich KJ, Alge-Priglinger C, Ueffing M, Deeg CA.The purpose of this study was to characterize the cell surface proteome of native compared to cultured equine retinal pigment epithelium (RPE) cells. The RPE plays an essential role in visual function and represents the outer blood-retinal barrier. We are investigating immunopathomechanisms of equine recurrent uveitis, an autoimmune inflammatory disease in horses leading to breakdown of the outer blood-retinal barrier and influx of autoreactive T-cells into affected horses' vitrei. Cell surface proteins of native and cultured RPE cells from eye-healthy horses were captured by biotinylation, an...
Emerging outbreaks associated with equine coronavirus in adult horses.
Veterinary microbiology    October 16, 2012   Volume 162, Issue 1 228-231 doi: 10.1016/j.vetmic.2012.10.014
Pusterla N, Mapes S, Wademan C, White A, Ball R, Sapp K, Burns P, Ormond C, Butterworth K, Bartol J, Magdesian KG.The purpose of this study was to describe clinical, hematological and fecal PCR results from 161 horses involved in outbreaks associated with ECoV. The outbreaks happened at four separate boarding facilities between November 2011 and April 2012 in the States of CA, TX, WI and MA. Following the molecular detection of ECoV in the feces from the initial index cases, the remaining herdmates were closely observed for the development of clinical signs. Fecal samples were collected from sick and healthy horses for the PCR detection of ECoV. All four outbreaks involved primarily adult horses. Fifty-ni...
The promoter region of interferon-gamma is hypermethylated in neonatal foals and its demethylation is associated with increased gene expression.
Developmental and comparative immunology    October 11, 2012   Volume 39, Issue 3 273-278 doi: 10.1016/j.dci.2012.09.006
Sun L, Gong Z, Oberst EJ, Betancourt A, Adams AA, Horohov DW.While born with a limited production, foals' interferon-gamma (IFN-γ) expression increases after birth. The underlying mechanisms remain unknown. DNA methylation is considered to be involved. Therefore, the DNA methylation status of the Ifng promoter in CD4(+) cells from neonatal foal was determined using a methylation-specific PCR (MSP), and its relevance to IFN-γ mRNA expression was estimated. The effect of environment on the DNA methylation was also evaluated by comparing ponies that were kept in a barn versus those on pasture. The DNA in the Ifng promoter was hypermethylated and its deme...
EcPV2 DNA in equine papillomas and in situ and invasive squamous cell carcinomas supports papillomavirus etiology.
Veterinary pathology    October 11, 2012   Volume 50, Issue 4 686-692 doi: 10.1177/0300985812463403
Lange CE, Tobler K, Lehner A, Grest P, Welle MM, Schwarzwald CC, Favrot C.Equine penile papillomas, in situ carcinomas, and invasive carcinomas are hypothesized to belong to a continuum of papillomavirus-induced diseases. The former ones clinically present as small grey papules, while the latter 2 lesions are more hyperplasic or alternatively ulcerated. To test the hypothesis that these lesions are papillomavirus-induced, samples of 24 horses with characteristic clinical and histologic findings of penile papillomas or in situ or invasive squamous cell carcinomas were collected. As controls, 11 horses with various lesions--namely, Balanoposthitis (6 cases), melanoma ...
Serological and molecular detection of Theileria equi infection in horses in Hungary.
Veterinary parasitology    October 4, 2012   Volume 192, Issue 1-3 143-148 doi: 10.1016/j.vetpar.2012.09.035
Farkas R, Tánczos B, Gyurkovszky M, Földvári G, Solymosi N, Edelhofer R, Hornok S.The prevalence of Theileria equi infection was studied in 324 healthy horses from 27 farms in Hungary with cELISA and IFAT and the blood samples of 101 horses selected randomly were also examined by PCR. The results indicate that there are many stud farms where one or more horses are infected with T. equi. Among 27 farms 17 (67.9%) were found to have seropositive horses. The seroprevalence of theileriosis among the tested stud farms ranged between 0 and 100%. No marked differences were found in seropositivity between geographical areas. The overall prevalence of positive samples was 32.0% with...
The first report of Rickettsia spp. in Amblyomma nodosum in the State of Mato Grosso do Sul, Brazil.
Ticks and tick-borne diseases    September 18, 2012   Volume 4, Issue 1-2 156-159 doi: 10.1016/j.ttbdis.2012.08.002
Almeida RF, Garcia MV, Cunha RC, Matias J, Labruna MB, Andreotti R.Ticks are vectors of various pathogens, including Rickettsia spp., which are responsible for causing an emerging disease of global significance. In the present study, an epidemiological survey was performed to identify Rickettsia spp. of the spotted fever group (SFG) in ticks and wild hosts in a native forest adjacent to livestock farming activity. The ticks and blood were evaluated by a hemolymph test and by PCR using the primers CS78 and CS323, which target a partial sequence of the enzyme citrate synthase (gltA) gene. Positive samples by PCR were further tested with the primers Rr190.70p an...
Developmental stage of strongyle eggs affects the outcome variations of real-time PCR analysis.
Veterinary parasitology    September 5, 2012   Volume 191, Issue 1-2 191-196 doi: 10.1016/j.vetpar.2012.08.018
Andersen UV, Haakansson IT, Roust T, Rhod M, Baptiste KE, Nielsen MK.Strongyle and trichostrongyle parasites are ubiquitous nematodes of grazing livestock. Several molecular diagnostic tests are based upon measuring and quantifying DNA obtained from parasite eggs. It is well known that such eggs undergo development during storage, but it remains unknown to which extent developmental stages can affect the variation of diagnostic test results. This study investigated the influence of developmental stages of strongyle eggs on the variation real-time polymerase chain reaction (PCR) results. Mixed species strongyle eggs were obtained from the faeces of a naturally i...
Venereal shedding of equid herpesvirus-1 (EHV-1) in naturally infected stallions.
Journal of veterinary internal medicine    September 4, 2012   Volume 26, Issue 6 1500-1504 doi: 10.1111/j.1939-1676.2012.00997.x
Walter J, Balzer HJ, Seeh C, Fey K, Bleul U, Osterrieder N.Equid herpesvirus 1 (EHV-1) is a highly prevalent pathogen in horse populations worldwide. Oronasal infection represents the classic route of disease transmission. Venereal shedding of EHV-1 is not regarded relevant in terms of virus spreading, which is in contrast to the close relatives of EHV-1, bovine and suid alphaherpesvirus, for which artificial insemination is a well-documented and accepted means of virus spread. Objective: Documentation of venereal EHV-1 shedding in 3 naturally infected stallions. Methods: Three stallions were infected during an acute outbreak by an EHV-1 strain with t...
Anaplasma phagocytophilum in horses and ticks in Tunisia.
Parasites & vectors    August 30, 2012   Volume 5 180 doi: 10.1186/1756-3305-5-180
M'ghirbi Y, Yaïch H, Ghorbel A, Bouattour A.Anaplasma phagocytophilum , the causative agent of granulocytic anaplasmosis, affects several species of wild and domesticated mammals, including horses. We used direct and indirect methods to compare and evaluate exposure to A. phagocytophilum in horses in northern Tunisia. Methods: Serum from 60 horses was tested by IFA for antibodies to A. phagocytophilum , and whole blood was tested for A. phagocytophilum 16S rRNA gene using a nested-PCR. To examine the risk of A. phagocytophilum transmission, 154 ticks that had been collected from horses were examined for the presence of A. phagocytophilu...
Extensive myenteric ganglionitis in a case of equine chronic intestinal pseudo-obstruction associated with EHV-1 infection.
Journal of comparative pathology    August 27, 2012   Volume 148, Issue 4 289-293 doi: 10.1016/j.jcpa.2012.07.004
Pavone S, Sforna M, Gialletti R, Prato S, Marenzoni ML, Mandara MT.A 7-year-old male trotter horse with a history of recurrent colic displayed clinical findings consistent with chronic intestinal pseudo-obstruction (CIP). At laparotomy, an impaction of the descending colon associated with marked atrophy of the right dorsal colon was found. The horse was humanely destroyed and tissues collected at necropsy examination revealed diffuse enteric ganglionitis comprising an infiltrate of CD3(+) T lymphocytes and plasma cells. At all levels of the intestinal tract the number of myenteric ganglia and of normal ganglion cells was decreased significantly. There were ch...
Evaluation of Xist expression in preattachment equine embryos.
Theriogenology    August 24, 2012   Volume 78, Issue 7 1429-1436 doi: 10.1016/j.theriogenology.2012.05.026
Beckelmann J, Budik S, Bartel C, Aurich C.Until now, sex determination in equine embryos has been performed by detection of Y-chromosome-specific sequences only. In the present study, expression of a Barr-body-specific marker, the X-inactivated-specific transcript (Xist) gene, whose gene product consists of RNA which coats and thereby inactivates one of the X chromosomes, was investigated in equine embryos produced in vivo. Preattachment embryos at different times after ovulation (Day 8: n = 9; Day 10: n = 12; Day 12: n = 15) were analyzed for Xist RNA expression using quantitative and qualitative reverse transcription-polymerase chai...
PCR detection of leptospiral carriers among seronegative horses.
The Veterinary record    July 31, 2012   Volume 171, Issue 4 105-106 doi: 10.1136/vr.e5022
Hamond C, Martins G, Lilenbaum W, Medeiros MA.No abstract available
Transmission of Lawsonia intracellularis to weanling foals using feces from experimentally infected rabbits.
Veterinary journal (London, England : 1997)    July 28, 2012   Volume 195, Issue 2 241-243 doi: 10.1016/j.tvjl.2012.05.028
Pusterla N, Sanchez-Migallon Guzman D, Vannucci FA, Mapes S, White A, DiFrancesco M, Gebhart C.The aim of this study was to investigate whether feces from rabbits experimentally infected with Lawsonia intracellularis were infectious to foals. Two rabbits were infected with L. intracellularis, while two rabbits served as controls. Eight foals received daily feces from either the infected or the control rabbits. All rabbits and foals were monitored daily for clinical signs for the entire study period (21days for rabbits, 42days for foals). Feces and blood were collected for the PCR detection of L. intracellularis and serologic analysis, respectively. None of the infected rabbits or foals ...
Development of one-step TaqMan® real-time reverse transcription-PCR and conventional reverse transcription-PCR assays for the detection of equine rhinitis A and B viruses.
BMC veterinary research    July 25, 2012   Volume 8 120 doi: 10.1186/1746-6148-8-120
Lu Z, Timoney PJ, White J, Balasuriya UB.Equine rhinitis viruses A and B (ERAV and ERBV) are common equine respiratory viruses belonging to the family Picornaviridae. Sero-surveillance studies have shown that these two viral infections are prevalent in many countries. Currently, the diagnosis of ERAV and ERBV infections in horses is mainly based on virus isolation (VI). However, the sensitivity of VI testing varies between laboratories due to inefficient viral growth in cell culture and lack of cytopathic effect. Therefore, the objective of this study was to develop molecular diagnostic assays (real-time RT-PCR [rRT-PCR] and conventi...
A computer-assisted microscopic analysis of bone tissue developed inside a polyactive polymer implanted into an equine articular surface.
Histology and histopathology    July 19, 2012   Volume 27, Issue 9 1203-1209 doi: 10.14670/HH-27.1203
Albert R, Vásárhelyi G, Bodó G, Kenyeres A, Wolf E, Papp T, Terdik T, Módis L, Felszeghy S.One of the most promising applications for the restoration of small or moderately sized focal articular lesions is mosaicplasty (MP). Although recurrent hemarthrosis is a rare complication after MP, recently, various strategies have been designed to find an effective filling material to prevent postoperative bleeding from the donor site. The porous biodegradable polymer Polyactive (PA; a polyethylene glycol terephthalate - polybutylene terephthalate copolymer) represents a promising solution in this respect. A histological evaluation of the longterm PA-filled donor sites obtained from 10 exper...
Development of a nested PCR assay to detect equine infectious anemia proviral DNA from peripheral blood of naturally infected horses.
Archives of virology    July 14, 2012   Volume 157, Issue 11 2105-2111 doi: 10.1007/s00705-012-1406-8
Dong JB, Zhu W, Cook FR, Goto Y, Horii Y, Haga T.Equine infectious anemia (EIA) has posed a major challenge and caused significant losses to the equine industry worldwide. PCR detection methods have considerable potential as an adjunct to conventional serological diagnostic techniques. However, most published PCR methods, including that recommended by the OIE, were designed using laboratory-adapted virus strains and do not function with field isolates of EIA virus (EIAV). In the present study, a nested PCR assay for detection of EIAV proviral DNA in peripheral blood cells of naturally infected horses was developed. Primer sets were designed ...
Murray Valley encephalomyelitis in a horse.
Australian veterinary journal    June 27, 2012   Volume 90, Issue 7 252-254 doi: 10.1111/j.1751-0813.2012.00949.x
Holmes JM, Gilkerson JR, El Hage CM, Slocombe RF, Muurlink MA.A 5-year-old Thoroughbred mare presented with signs of severe pain and was taken to exploratory laparotomy based on suspicion of an acute abdominal lesion. A mild gastrointestinal lesion was discovered, but was considered disproportional to the severity of signs displayed. The mare was later euthanased because of intractable pain. Comprehensive postmortem examination, including polymerase chain reaction testing of central nervous system tissue samples, allowed a definitive diagnosis of Murray Valley encephalomyelitis to be made. This case demonstrates the variability of clinical presentations ...
Occurrence of Borrelia lusitaniae infection in horses.
Veterinary microbiology    June 27, 2012   Volume 160, Issue 3-4 535-538 doi: 10.1016/j.vetmic.2012.06.029
Veronesi F, Laus F, Passamonti F, Tesei B, Piergili Fioretti D, Genchi C.The aim of the study was to investigate Borrelia burgdorferi sensu lato (s.l.) infection in horses exposed to heavy tick infestations. Blood samples of 98 healthy horses from 5 stud farms were examined by SNAP(®) 4D× and PCR to detect antibodies against B. burgdorferi s.l. and Borrelia DNA, respectively. Ten samples (15.3%) were antibody positive and 5 samples (5.1%) were both antibody and PCR positive. Sequence analysis showed the highest homology with the B. lusitaniae genospecies. No differences were found between sexes and stud farms, while age was significantly related to seropositivity...
Evidence of host adaptation in Lawsonia intracellularis infections.
Veterinary research    June 20, 2012   Volume 43, Issue 1 53 doi: 10.1186/1297-9716-43-53
Vannucci FA, Pusterla N, Mapes SM, Gebhart C.Lawsonia intracellularis is the causative agent of proliferative enteropathy, an endemic disease in pigs and an emerging concern in horses. Enterocyte hyperplasia is a common lesion in every case but there are differences regarding clinical and pathological presentations among affected species. We hypothesize that host susceptibility to L. intracellularis infection depends on the species of origin of the bacterial isolate. The objective of this study was to evaluate the susceptibilities of pigs and horses to L. intracellularis infection using either a porcine or an equine isolate. Methods: Twe...
Increasing expression of oxytocin and vasopressin receptors in the equine conceptus between Days 10 and 16 of pregnancy.
Reproduction, fertility, and development    June 16, 2012   Volume 24, Issue 5 641-648 doi: 10.1071/RD11167
Budik S, Palm F, Walter I, Helmreich M, Aurich C.Oxytocin (OT) and arginine vasopressin (AVP) have been detected in the yolk sac of the pre-attachment equine conceptus. Therefore, we have assessed the presence of OT and AVP receptors in equine conceptuses between Days 10 and 16 of pregnancy by qualitative PCR, quantitative PCR and immunohistochemistry. Expression of OT receptor and of the AVP receptors V1aR and V2R could be verified after sequencing the RT-PCR products of the expected length. The size of conceptuses used for quantitative PCR significantly increased with day of pregnancy (P<0.01) as did their quantitative expression of OTR...
Expression of urocortin and corticotropin-releasing hormone receptors in the horse thyroid gland.
Cell and tissue research    June 12, 2012   Volume 350, Issue 1 45-53 doi: 10.1007/s00441-012-1450-4
Squillacioti C, De Luca A, Alì S, Paino S, Liguori G, Mirabella N.Urocortin (UCN) is a 40-amino-acid peptide and a member of the corticotropin-releasing hormone (CRH) family, which includes CRH, urotensin I, sauvagine, UCN2 and UCN3. The biological actions of CRH family peptides are mediated via two types of G-protein-coupled receptors, namely CRH type 1 receptor (CRHR1) and CRH type 2 receptor (CRHR2). The biological effects of these peptides are mediated and modulated not only by CRH receptors but also via a highly conserved CRH-binding protein (CRHBP). Our aim was to investigate the expression of UCN, CRHR1, CRHR2 and CRHBP by immunohistochemistry, Wester...
Granulomatous typhlocolitis, lymphangitis, and lymphadenitis in a horse infected with Listeria monocytogenes, Salmonella Typhimurium, and cyathostomes.
Veterinary pathology    June 11, 2012   Volume 50, Issue 2 252-255 doi: 10.1177/0300985812450717
Nemeth NM, Blas-Machado U, Hopkins BA, Phillips A, Butler AM, Sánchez S.A 15-year-old American Quarter horse mare was euthanized because of poor response to therapy for severe diarrhea. Significant gross findings were limited to the large intestines. The walls of the cecum and colon were thickened with widely scattered nodules in the mucosa and submucosa that extended into the enlarged colic lymph nodes. Microscopically, there was severe granulomatous typhlocolitis, lymphangitis, and lymphadenitis, with many intralesional Gram-positive, non-acid-fast coccobacilli and few cyathostomes. Intralesional bacteria were immunohistochemically and polymerase chain reaction ...
Rapid and efficient diagnosis of leptospirosis in an aborted foal by PCR of gastric juice.
Veterinary microbiology    May 29, 2012   Volume 160, Issue 1-2 274-275 doi: 10.1016/j.vetmic.2012.05.030
Hamond C, Martins G, Lilenbaum W, Medeiros MA.No abstract available
Occurrence of hemotrophic mycoplasmas in horses with correlation to hematological findings.
Veterinary microbiology    May 22, 2012   Volume 160, Issue 1-2 43-52 doi: 10.1016/j.vetmic.2012.05.016
Dieckmann SM, Hoelzle K, Dieckmann MP, Straube I, Hofmann-Lehmann R, Hoelzle LE.Hemotrophic mycoplasmas (HM) are small, cell wall-less bacteria and infections are known for a wide range of animals. One possible indication of equine HM infection was given in 1978, when a 'haemobartonellosis' outbreak was diagnosed in Nigerian horses by microscopy. However the first molecular proof of HM in horses was not reported until 2010, when a fragment of about 900 bp of the 16S rRNA of the equine HM was obtained. This sequence was used for the development of a SYBR green I real-time PCR assay specific for equine HM. The lower detection limit of the PCR was ten 16S rDNA copy numbers p...
Specific detection of all members of the Venezuelan Equine Encephalitis complex: development of a RT-Nested PCR.
Journal of virological methods    May 18, 2012   Volume 186, Issue 1-2 203-206 doi: 10.1016/j.jviromet.2012.05.009
Pisano MB, Seco MP, Ré VE, Farías AA, Contigiani MS, Tenorio A.Venezuelan Equine Encephalitis (VEE) complex belongs to alphavirus genus in the family Togaviridae. Several species of this complex are pathogenic to humans. VEE infections can produce severe or mild disease, and many cases remain undiagnosed. A specific and sensitive reverse transcriptase nested polymerase chain reaction (RT-Nested PCR) method was developed for the detection of all VEE subtypes, including Rio Negro Virus (RNV) (subtype VI), which circulates only in Argentina. Degenerated primers were designed and thermal cycling parameters were standardized. This technique is suitable for rap...
Equine laryngeal rhinosporidiosis in western Canada. Burgess HJ, Lockerbie BP, Czerwinski S, Scott M.A 12-year-old female Argentinean Warmblood mare was evaluated because of respiratory noise. The horse resided in Calgary, Alberta, Canada, but had been imported from Argentina 28 months prior to presentation. Endoscopy of the upper respiratory tract revealed a single polypoid mass on the left arytenoid. The mass was surgically excised and was diagnosed histologically as rhinosporidiosis. Polymerase chain reaction and DNA sequencing were used to confirm the etiological agent. Four weeks postoperatively, endoscopy was repeated, revealing recurrence of the original lesion with multiple additional...
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