Analyze Diet

Topic:Population Dynamics

The population dynamics of horses refers to the study of changes in horse populations over time, influenced by factors such as birth rates, death rates, immigration, and emigration. These dynamics are shaped by environmental conditions, resource availability, predation, and human intervention. Understanding population dynamics is essential for managing wild horse populations and ensuring sustainable practices in breeding and conservation efforts. This page compiles peer-reviewed research studies and scholarly articles that explore the factors affecting horse population dynamics, including genetic diversity, habitat utilization, and the impact of management strategies on population stability and growth.
Population Networks Associated with Runs of Homozygosity Reveal New Insights into the Breeding History of the Haflinger Horse.
The Journal of heredity    January 3, 2018   Volume 109, Issue 4 384-392 doi: 10.1093/jhered/esx114
Druml T, Neuditschko M, Grilz-Seger G, Horna M, Ricard A, Mesaric M, Cotman M, Pausch H, Brem G.Within the scope of current genetic diversity analyses, population structure and homozygosity measures are independently analyzed and interpreted. To enhance analytical power, we combined the visualization of recently described high-resolution population networks with runs of homozygosity (ROH). In this study, we demonstrate that this approach enabled us to reveal important aspects of the breeding history of the Haflinger horse. We collected high-density genotype information of 531 horses originating from 7 populations which were involved in the formation of the Haflinger, namely 32 Italian Ha...
Campaign to keep heavy hooves on the ground.
The Veterinary record    November 28, 2017   Volume 181, Issue 21 554-555 doi: 10.1136/vr.j5436
Declining populations of the three native breeds of heavy horse in the UK has prompted a charity appeal for support to preserve valuable genetic material. Kathryn Clark reports.
MHC haplotype diversity in Persian Arabian horses determined using polymorphic microsatellites.
Immunogenetics    November 23, 2017   Volume 70, Issue 5 305-315 doi: 10.1007/s00251-017-1039-x
Sadeghi R, Moradi-Shahrbabak M, Miraei Ashtiani SR, Miller DC, Antczak DF.Previous research on the equine major histocompatibility complex (MHC) demonstrated strong correlations between haplotypes defined by polymorphic intra-MHC microsatellites and haplotypes defined using classical serology. Here, we estimated MHC diversity in a sample of 124 Arabian horses from an endangered strain native to Iran (Persian Asil Arabians), using a validated 10-marker microsatellite panel. In a group of 66 horses related as parent-offspring pairs or half-sibling groups, we defined 51 MHC haplotypes, 49 of which were new. In 47 of the remaining 58 unrelated horses, we could assign on...
Assessment of genomic inbreeding in Polish Konik horses.
Polish journal of veterinary sciences    November 23, 2017   Volume 20, Issue 3 603-605 doi: 10.1515/pjvs-2017-0074
Kamiński S, Hering DM, Jaworski Z, Zabolewicz T, Ruść A.The aim of this study was to assess the inbreeding coefficient of Polish Konik horses based on runs of homozygosity (ROH). Ninety six horses kept in 6 herds located across Poland were genotyped with the use of EquineSNP60 BeadChip (Illumina). SNP markers with a Minor Allele Frequency lower than 0.01 and SNPs assigned to chromosome X or Y were excluded from the study. A total of 50 708 SNPs were included for statistical analysis (SVS software, Golden Helix). The analysis showed that the population is in genetic equilibrium, with He and Ho estimates both equal to 0.3086. Seven categories of Runs...
Using partial least squares regression as a predictive tool in describing equine third metacarpal bone shape.
Computer methods in biomechanics and biomedical engineering    October 26, 2017   Volume 20, Issue 15 1609-1612 doi: 10.1080/10255842.2017.1393806
Liley H, Zhang J, Firth E, Fernandez J, Besier T.Population variance in bone shape is an important consideration when applying the results of subject-specific computational models to a population. In this letter, we demonstrate the ability of partial least squares regression to provide an improved shape prediction of the equine third metacarpal epiphysis, using two easily obtained measurements.
Equine disease surveillance: quarterly summary.
The Veterinary record    October 21, 2017   Volume 181, Issue 16 419-422 doi: 10.1136/vr.j4715
of surveillance testing, April to June 2017International disease occurrence in the second quarter of 2017These are among matters discussed in the most recent quarterly equine disease surveillance report, prepared by Defra, the Animal Health Trust and the British Equine Veterinary Association.
Straight from the Horse’s “Mouth”: Genomic Epidemiology of an Icelandic Equine Epidemic.
mBio    October 10, 2017   Volume 8, Issue 5 doi: 10.1128/mBio.01613-17
Davies MR.Despite tight biosecurity measures, an outbreak of respiratory disease rapidly spread across the Icelandic equine population in 2010. Horse transportation was brought to a halt in order to contain the spread of the infectious agent. In a recent article, Björnsdóttir and colleagues (S. Björnsdóttir et al., mBio 8:e00826-17, 2017, https://doi.org/10.1128/mBio.00826-17) employ the power and resolution of "genomic epidemiology," the combination of whole genomic sequencing and epidemiological approaches, to examine the source and spread of the outbreak. Intriguingly, the outbreak was not viral ...
Genetic diversity and paternal origin of domestic donkeys.
Animal genetics    September 19, 2017   Volume 48, Issue 6 708-711 doi: 10.1111/age.12607
Han H, Chen N, Jordana J, Li C, Sun T, Xia X, Zhao X, Ji C, Shen S, Yu J, Ainhoa F, Chen H, Lei C, Dang R.Numerous studies have been conducted to investigate genetic diversity, origins and domestication of donkey using autosomal microsatellites and the mitochondrial genome, whereas the male-specific region of the Y chromosome of modern donkeys is largely uncharacterized. In the current study, 14 published equine Y chromosome-specific microsatellites (Y-STR) were investigated in 395 male donkey samples from China, Egypt, Spain and Peru using fluorescent labeled microsatellite markers. The results showed that seven Y-STRs-EcaYP9, EcaYM2, EcaYE2, EcaYE3, EcaYNO1, EcaYNO2 and EcaYNO4-were male specif...
Prevalence of obesity in the equine population of Saskatoon and surrounding area.
The Canadian veterinary journal = La revue veterinaire canadienne    September 8, 2017   Volume 58, Issue 9 967-970 
Kosolofski HR, Gow SP, Robinson KA.A retrospective study determined the prevalence of obesity and over-conditioning in horses in Saskatoon, Saskatchewan. Body condition score (BSC) was assessed for 290 horses from the Field Service practice at the Western College of Veterinary Medicine. The median BSC of horses was 6; however, 59 (20.3%) horses were classified as over-conditioned, and 24 (8.3%) as obese. Une étude rétrospective a déterminé la prévalence de l’obésité et du surconditionnement des chevaux à Saskatoon, en Saskatchewan. La note d’état corporel (NEC) a été évaluée pour 290 chevaux à la pratique sur...
D-loop haplotype diversity in Brazilian horse breeds.
Genetics and molecular biology    August 31, 2017   Volume 40, Issue 3 604-609 doi: 10.1590/1678-4685-GMB-2016-0166
Ianella P, Albuquerque MSM, Paiva SR, Egito AA, Almeida LD, Sereno FTPS, Carvalho LFR, Mariante AS, McManus CM.The first horses were brought to Brazil by the colonizers after 1534. Over the centuries, these animals evolved and adapted to local environmental conditions usually unsuitable for exotic breeds, thereby originating locally adapted Brazilian breeds. The present work represents the first description of maternal genetic diversity in these horse breeds based on D-loop sequences. A D-Loop HSV-I fragment of 252 bp, from 141 horses belonging to ten Brazilian breeds / genetic groups (locally adapted and specialized breeds) were analysed. Thirty-five different haplotypes belonging to 18 haplogroups we...
Genome-wide association study for tobiano spotting coat color in Korean Jeju × Thoroughbred horse population.
Animal genetics    August 29, 2017   Volume 48, Issue 6 728-729 doi: 10.1111/age.12596
Kim NY, Bhuiyan MSA, Chae HS, Baek KS, Son JK, Shin SM, Woo JH, Park SH, Lee SH.No abstract available
Optimal Regression Method for Near-Infrared Spectroscopic Evaluation of Articular Cartilage.
Applied spectroscopy    August 22, 2017   Volume 71, Issue 10 2253-2262 doi: 10.1177/0003702817726766
Prakash M, Sarin JK, Rieppo L, Afara IO, Töyräs J.Near-infrared (NIR) spectroscopy has been successful in nondestructive assessment of biological tissue properties, such as stiffness of articular cartilage, and is proposed to be used in clinical arthroscopies. Near-infrared spectroscopic data include absorbance values from a broad wavelength region resulting in a large number of contributing factors. This broad spectrum includes information from potentially noisy variables, which may contribute to errors during regression analysis. We hypothesized that partial least squares regression (PLSR) is an optimal multivariate regression technique and...
Development of a multilocus sequence typing scheme for Rhodococcus equi.
Veterinary microbiology    August 19, 2017   Volume 210 64-70 doi: 10.1016/j.vetmic.2017.08.010
Duquesne F, Houssin E, Sévin C, Duytschaever L, Tapprest J, Fretin D, Hébert L, Laugier C, Petry S.Rhodococcus equi causes pulmonary and extrapulmonary infections in animals and humans, with endemic situations and significant young foal mortality in stud farms worldwide. Despite its economic impact in the horse-breeding industry, the broad geographic and host distribution, global diversity and population structure of R. equi remain poorly characterised. In this context, we developed a multilocus sequence typing (MLST) scheme using 89 clinical and environmental R. equi of various origins and eight Rhodococcus sp. Data can be accessed at http://pubmlst.org/rhodococcus/. A clonal R. equi popul...
Investigation of genetic diversity and inbreeding in a Japanese native horse breed for suggestions on its conservation.
Animal science journal = Nihon chikusan Gakkaiho    July 21, 2017   Volume 88, Issue 12 1902-1910 doi: 10.1111/asj.12867
Onogi A, Shirai K, Amano T.Because native breeds can serve as genetic resources for adapting to environment changes, their conservation is important for future agroecosystems. Using pedigree analysis, we investigated genetic diversity and inbreeding in Japanese Hokkaido native horses, which have adapted to a cold climate and roughage diet. Genetic diversity was measured as the number of founders and the effective number of founders, ancestors and genomes. All metrics imply a decrease in genetic diversity. A comparison of these metrics suggested that pedigree bottlenecks contributed more than did random gene losses to th...
Mitochondrial DNA genetic variations among four horse populations in Egypt.
Journal, genetic engineering & biotechnology    July 6, 2017   Volume 15, Issue 2 469-474 doi: 10.1016/j.jgeb.2017.06.004
Othman OE, Mahrous KF, Shafey HI.Horses are one of the early domesticated animals in the world that changed societies and civilizations on a continent-wide scale. Due to the rare information about the genetic characterization of different horse populations in Egypt, this study aimed to identify the genetic biodiversity and relationships between four horse populations reared in Egypt. Genomic DNA was extracted and mtDNA region was amplified using polymerase chain reaction (PCR). The alignment of 384-bp amplified fragments showed the presence of 41 polymorphic sites resulting in 29 haplotypes which their sequences were submitte...
Individual quality and age but not environmental or social conditions modulate costs of reproduction in a capital breeder.
Ecology and evolution    June 15, 2017   Volume 7, Issue 15 5580-5591 doi: 10.1002/ece3.3082
Debeffe L, Poissant J, McLoughlin PD.Costs associated with reproduction are widely known to play a role in the evolution of reproductive tactics with consequences to population and eco-evolutionary dynamics. Evaluating these costs as they pertain to species in the wild remains an important goal of evolutionary ecology. Individual heterogeneity, including differences in individual quality (i.e., among-individual differences in traits associated with survival and reproduction) or state, and variation in environmental and social conditions can modulate the costs of reproduction; however, few studies have considered effects of these ...
Genetic diversity of Syrian Arabian horses.
Animal genetics    May 31, 2017   Volume 48, Issue 4 486-489 doi: 10.1111/age.12568
Almarzook S, Reissmann M, Arends D, Brockmann GA.Although Arabian horses have been bred in strains for centuries and pedigrees have been recorded in studbooks, to date, little is known about the genetic diversity within and between these strains. In this study, we tested if the three main strains of Syrian Arabian horses descend from three founders as suggested by the studbook. We examined 48 horses representing Saglawi (n = 18), Kahlawi (n = 16) and Hamdani (n = 14) strains using the Equine SNP70K BeadChip. For comparison, an additional 24 Arabian horses from the USA and three Przewalski's horses as an out group were added. Observed h...
Ancient mtDNA diversity reveals specific population development of wild horses in Switzerland after the Last Glacial Maximum.
PloS one    May 24, 2017   Volume 12, Issue 5 e0177458 doi: 10.1371/journal.pone.0177458
Elsner J, Hofreiter M, Schibler J, Schlumbaum A.On large geographical scales, changes in animal population distribution and abundance are driven by environmental change due to climatic and anthropogenic processes. However, so far, little is known about population dynamics on a regional scale. We have investigated 92 archaeological horse remains from nine sites mainly adjacent to the Swiss Jura Mountains dating from c. 41,000-5,000 years BP. The time frame includes major environmental turning points such as the Last Glacial Maximum (LGM), followed by steppe vegetation, afforestation and initial re-opening of the landscape by human agricultur...
Identification of key contributors in complex population structures.
PloS one    May 16, 2017   Volume 12, Issue 5 e0177638 doi: 10.1371/journal.pone.0177638
Neuditschko M, Raadsma HW, Khatkar MS, Jonas E, Steinig EJ, Flury C, Signer-Hasler H, Frischknecht M, von Niederhäusern R, Leeb T, Rieder S.Evaluating the genetic contribution of individuals to population structure is essential to select informative individuals for genome sequencing, genotype imputation and to ascertain complex population structures. Existing methods for the selection of informative individuals for genomic imputation solely focus on the identification of key ancestors, which can lead to a loss of phasing accuracy of the reference population. Currently many methods are independently applied to investigate complex population structures. Based on the Eigenvalue Decomposition (EVD) of a genomic relationship matrix we ...
Application of Genomic Estimation Methods of Inbreeding and Population Structure in an Arabian Horse Herd.
The Journal of heredity    April 27, 2017   Volume 108, Issue 4 361-368 doi: 10.1093/jhered/esx025
Al Abri MA, König von Borstel U, Strecker V, Brooks SA.Horse breeders rely heavily on pedigrees for identification of ancestry in breeding stock. Inaccurate pedigrees may erroneously assign individuals to false lineages or breed memberships resulting in wrong estimates of inbreeding and coancestry. Moreover, discrepancies in pedigree records can lead breeders seeking to limit inbreeding into making misguided breeding decisions. Genome-wide SNPs provide a quantitative tool to aid in the resolution of lineage assignments and the calculation of genomic measures of relatedness. The aim of this project was to pilot a comparison between pedigree and gen...
The legacy of Columbus in American horse populations assessed by microsatellite markers.
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie    February 14, 2017   Volume 134, Issue 4 340-350 doi: 10.1111/jbg.12255
Cortés O, Dunner S, Gama LT, Martínez AM, Delgado JV, Ginja C, Jiménez LM, Jordana J, Luis C, Oom MM, Sponenberg DP, Zaragoza P, Vega-Pla JL.Criollo horse populations descend from horses brought from the Iberian Peninsula over the period of colonization (15th to 17th century). They are spread throughout the Americas and have potentially undergone genetic hybridization with other breeds in the recent past. In this study, 25 autosomal microsatellites were genotyped in 50 horse breeds representing Criollo populations from 12 American countries (27 breeds), breeds from the Iberian Peninsula (19), one breed each from France and Morocco and two cosmopolitan horse breeds (Thoroughbred and Arabian). The genetic relationships among breeds i...
Pedigree analysis of the Turkish Arab horse population: structure, inbreeding and genetic variability.
Animal : an international journal of animal bioscience    February 13, 2017   Volume 11, Issue 9 1449-1456 doi: 10.1017/S175173111700009X
Duru S.The aim of this study was to evaluate genetic variability in the Turkish Arab horse population using pedigree information. This study is the first detailed pedigree analysis of the breed in Turkey. Pedigree data were collected from the National Studbook. The pedigree data for 23 668 horses, born between 1904 and 2014, were used in the analysis. From this data set, a reference population (RP) of 14 838 animals symbolising the last generation was defined. Demographic parameters, the inbreeding level (F), the average relatedness (AR), the effective population size (N e), the effective number of f...
Fallen stock data: An essential source of information for quantitative knowledge of equine mortality in France.
Equine veterinary journal    February 13, 2017   Volume 49, Issue 5 596-602 doi: 10.1111/evj.12664
Tapprest J, Morignat E, Dornier X, Borey M, Hendrikx P, Ferry B, Calavas D, Sala C.Quantitative information about equine mortality is relatively scarce, yet it could be of great value for epidemiological purposes. In France, data from rendering plants are centralised in the Fallen Stock Data Interchange database (FSDI), managed by the French Ministry of Agriculture, while individual equine data are centralised in the French equine census database, SIRE, managed by the French horse and riding institute (IFCE). Objective: To evaluate whether the combined use of the FSDI and SIRE databases can provide representative and accurate quantitative information on mortality for the Fre...
Genetic diversity of the Yonaguni horse based on polymorphisms in microsatellites and mitochondrial DNA.
The Journal of veterinary medical science    December 31, 2016   Volume 79, Issue 2 425-431 doi: 10.1292/jvms.16-0040
Senju N, Tozaki T, Kakoi H, Shinjo A, Matsuyama R, Almunia J, Takasu M.Thirty-two microsatellites and a mitochondrial DNA haplotypes of endangered Yonaguni horses were analyzed to establish a pedigree registration system and to understand their genetic diversity for planning effective conservation. Blood samples were collected from 78 of the 130 horses in existence, and DNA was extracted and genotyped. There were two major findings. One is that it is possible to use microsatellites for Yonaguni horse pedigree registration in the future because the power of exclusion of parentage testing is reliable at 0.999998. The second is the clarification of the current genet...
Diversity of mitochondrial DNA in three Arabian horse strains.
Journal of applied genetics    December 14, 2016   Volume 58, Issue 2 273-276 doi: 10.1007/s13353-016-0384-z
Almarzook S, Reissmann M, Brockmann GA.Arabian horse registries classify Arabian horses based on their dam lineages into five main strains. To test the maternal origin of Syrian Arabian horses, 192 horses representing the three major strains Saglawi, Kahlawi, and Hamdani were sequenced for 353 bp of their mitochondrial displacement loop (D-loop) region. Sequencing revealed 28 haplotypes comprising 38 sequence variations. The haplotype diversity values were 0.95, 0.91, and 0.90 in Kahlawi, Hamdani, and Saglawi strains, respectively. The pair-wise population differentiation estimates (Fst) between strains were low, ranging between 0...
An epidemiological analysis of equine welfare data from regulatory inspections by the official competent authorities.
Animal : an international journal of animal bioscience    December 9, 2016   Volume 11, Issue 7 1237-1248 doi: 10.1017/S1751731116002512
Hitchens PL, Hultgren J, Frössling J, Emanuelson U, Keeling LJ.Determining welfare status in a population is the first step in efforts to improve welfare. The primary objective of this study was to explore a new epidemiological approach for analysis of data from official competent authorities that pertain to compliance with animal welfare legislation. We reviewed data already routinely collected as part of Swedish official animal welfare inspections for 2010-13, using a checklist containing 45 checkpoints (CPs). These covered animal-, resource- and management-based measures of equine welfare. The animal-based CPs were measures that directly related to the...
Spotted phenotypes in horses lost attractiveness in the Middle Ages.
Scientific reports    December 7, 2016   Volume 6 38548 doi: 10.1038/srep38548
Wutke S, Benecke N, Sandoval-Castellanos E, Döhle HJ, Friederich S, Gonzalez J, Hallsson JH, Hofreiter M, Lõugas L, Magnell O, Morales-Muniz A....Horses have been valued for their diversity of coat colour since prehistoric times; this is especially the case since their domestication in the Caspian steppe in ~3,500 BC. Although we can assume that human preferences were not constant, we have only anecdotal information about how domestic horses were influenced by humans. Our results from genotype analyses show a significant increase in spotted coats in early domestic horses (Copper Age to Iron Age). In contrast, medieval horses carried significantly fewer alleles for these phenotypes, whereas solid phenotypes (i.e., chestnut) became domina...
Genotype distribution and allele frequencies of the genes associated with body composition and locomotion traits in Myanmar native horses.
Animal science journal = Nihon chikusan Gakkaiho    December 7, 2016   Volume 88, Issue 8 1198-1203 doi: 10.1111/asj.12756
Okuda Y, Moe HH, Moe KK, Shimizu Y, Nishioka K, Shimogiri T, Mannen H, Kanemaki M, Kunieda T.Myanmar native horses are small horses used mainly for drafting carts or carriages in rural areas and packing loads in mountainy areas. In the present study, we investigated genotype distributions and allele frequencies of the LCORL/NCAPG, MSTN and DMRT3 genes, which are associated with body composition and locomotion traits of horses, in seven local populations of Myanmar native horses. The genotyping result of LCORL/NCAPG showed that allele frequencies of C allele associated with higher withers height ranged from 0.08 to 0.27, and 0.13 in average. For MSTN, allele frequencies of C allele ass...
Runs of homozygosity: current knowledge and applications in livestock.
Animal genetics    December 1, 2016   Volume 48, Issue 3 255-271 doi: 10.1111/age.12526
Peripolli E, Munari DP, Silva MVGB, Lima ALF, Irgang R, Baldi F.This review presents a broader approach to the implementation and study of runs of homozygosity (ROH) in animal populations, focusing on identifying and characterizing ROH and their practical implications. ROH are continuous homozygous segments that are common in individuals and populations. The ability of these homozygous segments to give insight into a population's genetic events makes them a useful tool that can provide information about the demographic evolution of a population over time. Furthermore, ROH provide useful information about the genetic relatedness among individuals, helping t...
A survey of the antimicrobial susceptibility of Escherichia coli isolated from Sable Island horses.
Canadian journal of microbiology    November 7, 2016   Volume 63, Issue 3 246-251 doi: 10.1139/cjm-2016-0504
Timonin ME, Poissant J, McLoughlin PD, Hedlin CE, Rubin JE.The feral horses of Sable Island are a geographically isolated population located ∼160 km off the east coast of Nova Scotia, Canada. Because these horses have no contact with domestic animals, have minimal contact with people, and have never received antimicrobials, they offer a unique opportunity to study the dissemination of antimicrobial resistance in unmanaged populations. As part of an ongoing multidisciplinary and individual-based monitoring program, we collected feces from 508 geolocalized horses (92% of the total population) between July and September 2014. We selectively cultured Es...
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