Analyze Diet

Topic:Livestock

Livestock and horses are integral components of agricultural systems, providing resources such as meat, milk, fiber, and labor. Horses, in particular, have unique roles in agriculture, sport, and recreation, distinguishing them from other livestock. This topic explores the management, breeding, nutrition, and health of horses and other livestock species. It encompasses studies on husbandry practices, welfare considerations, and the impact of these animals on the environment and economy. The page includes peer-reviewed research studies and scholarly articles that investigate various aspects of livestock and equine science, offering insights into their biological, ecological, and economic significance.
Plasmidial virulence of Rhodococcus equi and its implications of livestock infections for human health: a possible foodborne pathogen?
Revista do Instituto de Medicina Tropical de Sao Paulo    March 13, 2026   Volume 68 e23 doi: 10.1590/S1678-9946202668023
Ribeiro MG, Barbosa AN, Pereira JG, Possebon FS, Pinto JPAN, Portilho FVR, Bello TS, Paz PJL, Arabe Filho MF, Panegossi LC, Reznik AU, Zeferino LO....Rhodococcus equi, a versatile and adapted opportunistic in nature bacterium, infects animals and humans. This soil-borne microorganism widely occurs in farms. Its dissemination occurs by feces from domestic animals (particularly horses, cattle, and pigs). In the last decades, bacterial virulence has been strongly attributed to plasmid-encoded virulence-associated proteins (VAPs). To date, three virulence plasmid types have been recognized: pVAPA, pVAPB, and pVAPN, which are considered host- or livestock-adapted. The pVAPA type is related to equine isolates (horse-type), the pVAPB type is assoc...
Transmission of Salmonella clones between different animal species in a horse and cattle breeding region in Japan.
Scientific reports    March 6, 2026   doi: 10.1038/s41598-026-39311-y
Arai N, Niwa H, Uchida-Fujii E, Sawa Y, Tamamura-Andoh Y, Kinoshita Y, Momoki A, Watanabe-Yanai A, Iwata T, Kubo M, Kusumoto M.Sequence type 34 (ST34) Salmonella enterica serovar Typhimurium and its monophasic variant (Salmonella 4,[5],12:i:-) are the most prevalent clones among humans and animals worldwide, including in Japan. Although cross-species transmission may have occurred in the background of global spread, the matter remains unresolved. Here, we conducted high-resolution phylogenetic analysis using whole-genome sequencing data of Salmonella Typhimurium and 4,[5],12:i:- obtained from a horse and cattle breeding district in Japan and identified cases of cross-species transmission of ST34 Salmonella 4,[5],12:i:...
Metatranscriptomics reveals the horse gut RNA virome and a viral sharing network with human and domestic animals.
Frontiers in veterinary science    March 3, 2026   Volume 13 1755551 doi: 10.3389/fvets.2026.1755551
Li C, Liu K, Wei N, Hu S, Li X, Li C.RNA viruses, a unique class of life forms, are widely distributed in nature and pose potential health risks. Monitoring the gut RNA virome in livestock is a crucial component of global health surveillance. As important companion animals, horses play a vital role in transportation and make significant contributions to various cultural and economic activities. Nevertheless, the characteristics of horse gut RNA viruses remain largely uncharted. Unassigned: In this study, we used metatranscriptome sequencing and bioinformatics methods to characterize viruses within the gut contents of 16 horses sp...
Molecular characterization and phylogeography of equine influenza virus H3N8 detected in donkeys in Nigeria 2022-2023.
BMC veterinary research    February 3, 2026   doi: 10.1186/s12917-025-05279-6
Mkpuma N, Meseko C, Shittu I, Chukwu C, Afiukwa FN, Iroha IR, Muhammad M, Ogbu O.Equine influenza virus (EIV) H3N8 is a highly contagious respiratory pathogen that poses significant health and economic risks to equids globally. In southeastern Nigeria where equids are sold and slaughtered, limited data exist on EIV epidemiology and circulating lineages. Methods: To address this gap, an active surveillance was conducted between January 2022 and October 2023. A total of 400 nasal swabs were collected from horses and donkeys at slaughterhouses and animal markets. The swabs were screened for equine influenza virus (EIV) using quantitative Reverse-Transcription Polymerase Chain...
Integrated targeted metabolomics and transcriptomics analysis reveals heterogeneity of subcutaneous and pericardial adipose tissues in Yili horses.
Food chemistry. Molecular sciences    January 26, 2026   Volume 12 100365 doi: 10.1016/j.fochms.2026.100365
Yang L, Shen Z, Song L, Lu Z, Zeng Y, Wang J, Ren W, Yao X, Meng J.Fat deposition is a key economic trait in livestock, yet distinct adipose depots often display marked functional heterogeneity. The molecular basis underlying this divergence in Yili horses, however, remains poorly understood. Therefore, we hypothesized that the heterogeneity in fatty acid composition between subcutaneous (SAT) and pericardial adipose tissues (PCAT) in Yili horses is associated with distinct transcriptional programs, which can be explored using an integrated multi-omics approach. Using targeted metabolomics, we found that PCAT contained significantly higher levels of total, sa...
Outbreak of equine botulism type C associated with consumption of baleage in Brazil. Souza LL, Lima AS, Martins AS, Silva TA, Borsanelli AC, Dutra IS, Pupin RC, Gomes DC, Lemos RA.An outbreak of botulism occurred in March 2024 among horses at a Quarter Horse stud farm in Central-West Brazil. After ingesting baleage, 22 of 26 (85%) horses housed in stables and fed baleage became ill. The affected horses had dysphagia, muscular weakness, fasciculations, and progressive recumbency; 13 of 22 (59%) died within a few days. The diagnosis of type C botulism was established based on clinical and epidemiologic findings and confirmed by mouse bioassays, which indicated botulinum toxin type C in liver samples and intestinal contents. Furthermore, PCR testing identified toxigenic i...
The Miserable Lives of Abandoned Cart Horses.
Veterinary medicine and science    January 7, 2026   Volume 12, Issue 1 e70804 doi: 10.1002/vms3.70804
Desta TT.Despite their use in rural and urban transport systems, horses are often abandoned when they are aged and/or face health problems. Abandoned horses typically experience a miserable life, which is ethically unacceptable. This piece of work reports on the suffering of an abandoned cart horse and proposes strategies to improve the welfare of such horses. A type of pension program or provident fund and sanctuary should be established for working animals to lessen their suffering after abandonment. Comprehensive studies should be conducted to gather more data on the suffering of abandoned horses an...
Postbiotics: Multifunctional Microbial Products Transforming Animal Health and Performance.
Veterinary sciences    December 12, 2025   Volume 12, Issue 12 1191 doi: 10.3390/vetsci12121191
Prasad S, Patel B, Kumar P, Lall R.Postbiotics, which are preparations of inanimate microorganisms and their components, have emerged as a promising functional ingredient in animal health and nutrition. Postbiotics are primarily composed of microbial cell fractions, metabolites, enzymes, vitamins, polysaccharides, and short-chain fatty acids. Unlike probiotics, postbiotics do not contain live microorganisms, which strengthens their greater stability and safety in feed/food formulations. Postbiotics offer several beneficial effects, including antioxidant, anti-inflammatory, immune-modulatory, and antimicrobial actions. They enha...
Using Satellite Remote Sensing to Estimate Rangeland Carrying Capacity for Sustainable Management of the Marismeño Horse in Doñana National Park, Spain.
Animals : an open access journal from MDPI    December 5, 2025   Volume 15, Issue 24 3507 doi: 10.3390/ani15243507
Ramírez-Juidias E, Díaz de la Serna-Moreno Á, Delgado-Pertíñez M.Rangeland degradation poses a serious challenge for the sustainable management of free-ranging livestock in Mediterranean wetlands. In National Park, Spain, the endangered horse depends exclusively on natural forage, making it essential to monitor vegetation productivity and grazing suitability under increasing climate variability. This study presents a satellite-based assessment of rangeland carrying capacity to support the adaptive management of this iconic breed. A six-year time series (2015-2020) of 1242 images from Landsat 8 OLI/TIRS and Sentinel-2 (L1C/L2A) was processed using ILWIS an...
Eco-friendly biodegradation processes for affordable wastewater treatment in agricultural and horse stable environments.
Water science and technology : a journal of the International Association on Water Pollution Research    December 4, 2025   Volume 92, Issue 11 1551-1566 doi: 10.2166/wst.2025.175
Tsytlishvili K.The pursuit of sustainable livestock farming and environmentally responsible agricultural practices has spurred the development of innovative and affordable wastewater treatment technologies. This study investigates new biological treatment approaches that integrate the complementary processes of filtration, biosorption, and biodegradation to enhance eco-friendly wastewater management. A novel treatment concept was developed, representing a modern modification of the biosorption method that combines the oxidation of organic pollutants with ammonium reduction by an immobilized biocenosis, achie...
Revisiting genital leptospirosis in large animals: impacts on reproductive health, diagnostic challenges, and future directions.
Journal of clinical microbiology    December 4, 2025   Volume 64, Issue 3 e0052525 doi: 10.1128/jcm.00525-25
Borges ALdSB, Aymée L, Lilenbaum W, Di Azevedo MIN.Leptospirosis, caused by spp. infection, is a globally significant zoonotic disease that affects a wide range of animals. Although renal colonization is well-documented, genital infection by leptospires remained less explored for decades, despite its impact on reproduction. Evidence suggests that genital infection occurs as a primary condition rather than secondary to renal colonization, particularly in cattle suffering from bovine genital leptospirosis (BGL), linked to chronic infections by strains of the Sejroe serogroup. In horses, a similar condition is suggested to be associated with str...
Rewilded horses as a nature-based solution for wintertime tick control in Japan: help or hindrance?
Experimental & applied acarology    December 2, 2025   Volume 95, Issue 4 67 doi: 10.1007/s10493-025-01097-5
Kwak ML, Echigo H, Hoketsu T, Taya Y, Numata H, Shiraki Y, Kelava S, Markowsky G, McInnes D, Hayashi N, Nonaka N, Kawai M, Nakao R.The control of ticks is challenging owing to their ubiquity, complex ecologies, and difficulties relating to costs and non-target impacts of chemical control programs. Nature-based solutions centre around co-opting natural processes and biodiversity to address socio-environmental problems; and in some cases, rewilded species can provide nature-based solutions. In northern Japan, the winter ecology of ticks is poorly studied, though some species are believed to overwinter under the snow. Winter grazing activity of rewilded horses may disturb overwintering ticks, exposing them to sub-zero temper...
Comparison between SNP array and imputed data to estimate population structure and ROH hotspots in horse breeds.
BMC genomics    November 29, 2025   Volume 26, Issue 1 1086 doi: 10.1186/s12864-025-12256-8
Chessari G, Reich P, Criscione A, Falker-Gieske C, Mastrangelo S, Tumino S, Bordonaro S, Marletta D, Tetens J.Single nucleotide polymorphism (SNP) arrays are commonly used for studying the genomic structure and diversity of livestock breeds, but whole-genome sequencing (WGS) provides higher-resolution genomic data. Genotype imputation has become a standard practice for increasing the genomic resolution of association studies. This work aimed to extend imputation to biodiversity analyses, comparing SNP array data before and after imputation. A 40 k SNP dataset of 281 horses from 12 breeds (DS) was imputed to sequence-level using a reference panel of 327 sequenced individuals, generating approximately 9...
Bridging hosts: Domestic horse density and Hendra virus spillover risk in a changing landscape.
Equine veterinary journal    November 14, 2025   Volume 58, Issue 2 549-563 doi: 10.1111/evj.70118
Linnegar B, Hoegh A, McCallum H, Peel AJ.Anthropogenic climatic and landscape change can drive behavioural shifts in wildlife and thus lead to increased risk of pathogen exposure for humans and domestic animals. While spillover research often focuses on the reservoir hosts or ongoing transmission in humans, livestock and companion animals can play important roles as bridging and amplifying hosts, facilitating the emergence of highly pathogenic diseases. Objective: To investigate the distribution and density of domestic horses in the context of their role as bridge hosts for Hendra virus and build models to study zoonotic emergence. M...
The genetic diversity and population structure of native horse breeds in Xinjiang, China.
Frontiers in genetics    November 12, 2025   Volume 16 1439312 doi: 10.3389/fgene.2025.1439312
Tang C, Yang B, Dawulietihan G, Xue L, Liu S, Yalimaimaiti Y, Wang Q, Yang N, Sun X, Wang Y, Wumaier A, Khizat S, Assanbayev T, Kozhanov Z....Xinjiang is a region renowned for its rich diversity of native horse breeds, making it one of the most affluent equine genetic resource areas in China. While prized for their high adaptability and tolerance to roughage, the conservation of these native breeds faces challenges from the introduction of external breeds and industrial changes. Furthermore, the unknown population structure of Xinjiang horse breeds has hindered effective conservation efforts. Unassigned: This study presents the first comprehensive Single Nucleotide Polymorphism (SNP) analysis of seven Xinjiang native horse breeds. W...
Development and Survivability of The Free-Living Stage Larvae of Equine Strongyles in Different Environments and Soil Types.
Tropical life sciences research    October 31, 2025   Volume 36, Issue 3 101-120 doi: 10.21315/tlsr2025.36.3.5
Malek IA, Baharudin F, Peng TL, Sabri J.Equine strongyles are harmful gastrointestinal parasites affecting horses' health and productivity. In tropical regions, environmental conditions, including temperature and soil type, significantly influence the development and survivability of strongyle larvae. This study aims to assess the development and survival of third-stage larvae (L3) of strongyles under different temperatures and soil types commonly found in Malaysia. Faecal samples from five adult horses aged between 22-24 years that were kept under a semi-intensive management system and had no history of recent anthelmintic treatmen...
A Scoping Review of Antimicrobial Therapy in Leptospira Infections in Domestic Animals.
Animals : an open access journal from MDPI    October 20, 2025   Volume 15, Issue 20 3045 doi: 10.3390/ani15203045
Mendes J, Aymée L, Lilenbaum W.Leptospirosis, caused by spp., affects multiple domestic species and can result in significant economic and public health impacts. This scoping review, conducted following the PRISMA 2020 guidelines, searched PubMed, SciELO, and Scopus for original studies that described complete therapeutic protocols (including dose, duration, and confirmed diagnosis) in dogs, cats, cattle, pigs, horses, sheep, and goats. Thirty-five studies met the criteria: 14 (40%) in cattle, 7 (20%) in swine, 2 (5.7%) in small ruminants, 7 (20%) in dogs and cats, and 5 (14.3%) in horses. In livestock, streptomycin monoth...
Metagenomic Applications to Herbivore Gut Microbiomes: A Comprehensive Review of Microbial Diversity and Host Interactions.
Animals : an open access journal from MDPI    October 10, 2025   Volume 15, Issue 20 2938 doi: 10.3390/ani15202938
Wei J, Wei L, Ullah A, Geng M, Zhang X, Wang C, Khan MZ, Wang C, Zhang Z.Herbivorous animals rely on complex gastrointestinal systems and microbial communities to efficiently digest plant-based diets, extract nutrients, and maintain health. Recent advances in metagenomic technologies have enabled high-resolution, culture-independent analysis of gut microbiota composition, functional potential, and host-microbe interactions, providing insights into microbial diversity across the herbivore digestive tract. This review summarizes key findings on the gastrointestinal microbiota of herbivores, focusing on ruminant foregut and non-ruminant hindgut fermentation. Ruminants...
One health approach on zoonotic multidrug-resistant Klebsiella pneumoniae isolated from Egyptian cattle, horses, and humans.
Open veterinary journal    September 30, 2025   Volume 15, Issue 9 4219-4234 doi: 10.5455/OVJ.2025.v15.i9.28
Eissa N, Salman MB, Younes AM, Mohamed ESA, Abu-Seida AM, Abdulkarim A, Zin Eldin AI.Worldwide, zoonotic diseases represent serious risks to public health, underscoring the need for efficient surveillance techniques. The One Health concept has gained popularity as a comprehensive paradigm for tackling zoonotic disease surveillance because it acknowledges the correlation of pathogens, animals, humans, and the surrounding environment. Public health is now concerned about antibiotic-resistant (), which causes severe impurities in animals and humans, leading to morbidity and mortality. Unassigned: This study examined the collaborative efforts between human and animal (cattle and ...
Activity and behavior patterns of cattle, horses, and sheep grazing in mountainous areas using geolocation collars.
Journal of animal science    September 20, 2025   Volume 103 skaf318 doi: 10.1093/jas/skaf318
Vidal-Cardos R, Fàbrega E, Dalmau A.The sustainability of extensive livestock systems is compromised. It is necessary to enhance our understanding of the activity and grazing behavior of different livestock species (cows, horses, and sheep) sharing the same mountainous areas. Nowadays, the observation and analysis of animal activity is greatly facilitated by remote tracking technology, especially in zones with difficult access. In this article, we proved that commercial geolocation collars can provide meaningful data on animal activity, behavior, and distribution, which can be used to model daily distances, activity patterns, gr...
IMAGE001: A new livestock multispecies SNP array to characterize genomic variation in European livestock gene bank collections.
Animal genetics    September 18, 2025   Volume 56, Issue 5 e70039 doi: 10.1111/age.70039
Crooijmans RPMA, Gonzalez Prendes R, Colli L, Del Corvo M, Barbato M, Somenzi E, Tosser-Klopp G, Meszaros G, Ajmone-Marsan P, Weigend S, Wallner B....Molecular genetic characterization of genetic resources is essential to study biodiversity. Whereas whole genome sequencing is still relatively expensive, low density SNP arrays offer a cost-effective and standardized solution. However, most of the current arrays are species specific. Their high SNP density often exceeds diversity mapping requirements and remains too costly for many genetic resource managers. The IMAGE H2020 project aimed at developing a low-cost multispecies SNP array to facilitate mapping of the genetic diversity in samples stored in gene banks and in vivo (on farm) traditi...
Assessment of thermal imaging to objectively body condition score mature horses and multiparous gestating beef cows.
Translational animal science    September 15, 2025   Volume 9 txaf121 doi: 10.1093/tas/txaf121
Webster AP, Wright RK, Hammond JB, Kotey NA, Gleason CB, White RR.This study explored whether thermal imaging could provide an objective means of body condition scoring (BCS) horses and multiparous, gestating beef cows. This study consisted of two parts: one part assessed BCS in horses of the Quarter Horse or Thoroughbred breed types while the other evaluated BCS of gestating beef cows. Ground truth BCS were assigned by five to eight trained scorers for each animal. Thermal images were also collected from one or both sides of the body and analyzed for surface temperature. Surface temperature and BCS were evaluated with the whole body, and for five (cows) or ...
Independent Development of Resistance to Main Classes of Anthelmintics by Gastrointestinal Nematodes of Ruminants and Horses.
Pathogens (Basel, Switzerland)    September 5, 2025   Volume 14, Issue 9 898 doi: 10.3390/pathogens14090898
Cabaret J.Resistance to anthelmintics in gastrointestinal nematodes (GINs) is highly prevalent, as these parasites have been treated with anthelmintics for decades in ruminants and horses. Anthelmintics belong to different classes, each with a different mode of action. The most used are benzimidazoles and macrocyclic lactones and, to a lesser extent, levamisole and pyrantel in herbivores, as estimated from the literature. Combining these classes should be effective in controlling GIN. However, several farmers' practices tend to promote GIN resistance. Therefore, it is unclear whether the use of anthelmi...
Influenza D Virus Circulation Among Bovines, Swine, Equines, and Wild Boars in Italy: A Sero-Epidemiological Study.
Pathogens (Basel, Switzerland)    September 5, 2025   Volume 14, Issue 9 891 doi: 10.3390/pathogens14090891
Falsini A, Coppola C, Fiori A, Buonavoglia D, Marchi S, Montomoli E, Pellegrini F, Lanave G, Martella V, Camero M, Trombetta CM.Influenza D virus (IDV), belonging to the family, was first discovered in 2011 in pigs. Surveys in humans and animals have been carried out to decipher IDV ecology. In this seroepidemiological study, we investigated the circulation of IDV lineages across Italy in livestock and wildlife animals. A total of 1038 animal serum samples (from 246 bovines, 249 swine, 98 equines, and 445 wild boars) were tested using hemagglutination inhibition and virus neutralization assays. The results confirm bovines as the primary reservoir for IDV, with high seroprevalence for both D/660 (87%) and D/OK (80%) st...
A serological test based on mutated recombinant Fasciola hepatica cathepsin L protease for the diagnosis of equine fasciolosis.
Veterinary parasitology    September 2, 2025   Volume 340 110592 doi: 10.1016/j.vetpar.2025.110592
Kronenberg PA, Fouché N, Sekiya M, Liechti P, Frey CF, Mulcahy G, Eichenberger RM.Fasciola hepatica is a common trematode parasite of livestock in many regions, causing significant economic losses and affecting animal welfare. Horses rarely develop patent liver fluke infection. However, liver damage can affect animal health and welfare. Therefore, F. hepatica infection in horses may be underreported. Recently, a serological test for the antibody detection has been reported based on recombinant parasite cathepsin L1 (FhCL1) protease. Here, we optimized this enzyme-linked immunosorbent assay (ELISA) for antibody-detection in horses with equine fasciolosis based on recombinant...
Postbiotics and Parabiotics in Veterinary Medicine: A Market Overview.
Probiotics and antimicrobial proteins    September 1, 2025   doi: 10.1007/s12602-025-10734-9
Hosseini SH, Sharafi H, Emamjomeh A, Nasri F, Hosseini A, Mardani S, Moradi M.Postbiotics and parabiotics (PP) are innovative concepts in veterinary medicine that have garnered substantial interest owing to their unique properties and potential benefits. PP offers a promising alternative to live bacteria, demonstrating properties such as prebiotic, immunomodulatory, antimicrobial, anti-inflammatory, antioxidant, and anticancer effects, while potentially mitigating some of the common challenges associated with live bacterial applications. PP products are manufactured and commercially employed in livestock, poultry, and pets. Moreover, postbiotic-based commercial products...
Late Iron Age and Roman equine breeding north of the Alps: Genetic insights and cultural implications.
iScience    August 13, 2025   Volume 28, Issue 9 113224 doi: 10.1016/j.isci.2025.113224
Sharif MB, Mohaseb AF, Orlando L, Saliari K, Kunst GK, Czeika S, Mashkour M, Cucchi T, Peters J, Trixl S, Mohandesan E.The Roman conquest of the northern Alpine foreland in 15 BCE introduced larger-sized horses and hybrid mules to the region. To investigate their genetic profiles and influence on local breeding, we analyzed our previously generated shallow shotgun DNA data from 402 Late Iron Age and Roman equids, supplemented with mitochondrial and nuclear capture data from 40 to 31 equids from the same regions and periods. Late Iron Age and Roman horses exhibit high matrilineal diversity, with unique haplogroups in the latter indicating exogenous animals. The preferred use of male mounts in army service menti...
Correction: Modelling African horse sickness emergence and transmission in the South African control area using a deterministic metapopulation approach.
PLoS computational biology    August 12, 2025   Volume 21, Issue 8 e1013377 doi: 10.1371/journal.pcbi.1013377
de Klerk JN, Gorsich EE, Grewar JD, Atkins BD, Tennant WSD, Labuschagne K, Tildesley MJ.[This corrects the article DOI: 10.1371/journal.pcbi.1011448.].
Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering.
BMC microbiology    July 21, 2025   Volume 25, Issue 1 447 doi: 10.1186/s12866-025-04152-8
Ghielmetti G, Stevens MJA, Schmitt S, Kittl S, Cernela N, Biggel M, Schulthess B, Keller PM, Schrenzel J, Stephan R.Rhodococcus equi is an intracellular bacterial pathogen that can cause infections in various hosts, including humans and animals. Host-associated virulence plasmids have been identified as key contributors to the pathogenicity of R. equi and potentially play a role in determining the host tropism of the bacteria. The investigation of additional clinical and environmental isolates is likely to provide novel insights into the population structure, infection pathways, and drug resistance of this important pathogen. We combined whole-genome sequencing and antimicrobial-susceptibility testing of 37...
Artificial intelligence tools to assess different levels of activity performed by semi-wild horses in grassland ecosystems.
Environmental monitoring and assessment    July 16, 2025   Volume 197, Issue 8 922 doi: 10.1007/s10661-025-14363-1
Chodkiewicz A, Prończuk M, Studnicki M.In order to understand the role of horses in ecosystems and to effectively use their grazing in the protection of grasslands, it is important to assess where they primarily stay, followed by whether these habitats are used for grazing or resting. The main goal of the study was the model development based on artificial intelligence tools which allow to distinguish the basic levels of activity performed by horses using data from an accelerometer mounted in a collar worn by animals. The model calibration was based on direct observations of five randomly selected Polish primitive horse mares. In o...
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