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Topic:Epidemiology

Epidemiology in horses involves the study of the distribution and determinants of health-related states and events in equine populations. It encompasses the investigation of patterns, causes, and effects of diseases and health conditions within horse populations. This field of study aims to identify risk factors for disease and targets for preventive healthcare. Key components of equine epidemiology include disease surveillance, outbreak investigation, and the study of disease dynamics within herds or regions. Research in this area often focuses on infectious diseases, zoonotic diseases, and the impact of environmental factors on equine health. This page compiles peer-reviewed research studies and scholarly articles that explore various aspects of epidemiology in horses, including disease prevalence, transmission pathways, and strategies for disease prevention and control.
Effectiveness of Abbott BinaxNOW Rapid Antigen Test for Detection of SARS-CoV-2 Infections in Outbreak among Horse Racetrack Workers, California, USA.
Emerging infectious diseases    September 1, 2021   Volume 27, Issue 11 2761-2767 doi: 10.3201/eid2711.211449
Surasi K, Cummings KJ, Hanson C, Morris MK, Salas M, Seftel D, Ortiz L, Thilakaratne R, Stainken C, Wadford DA.The Abbott BinaxNOW rapid antigen test is cheaper and faster than real-time reverse transcription PCR (rRT-PCR) for detecting severe acute respiratory syndrome coronavirus 2. We compared BinaxNOW with rRT-PCR in 769 paired specimens from 342 persons during a coronavirus disease outbreak among horse racetrack workers in California, USA. We found positive percent agreement was 43.3% (95% CI 34.6%-52.4%), negative percent agreement 100% (95% CI 99.4%-100%), positive predictive value 100% (95% CI 93.5%-100%), and negative predictive value 89.9% (95% CI 87.5%-92.0%). Among 127 rRT-PCR-positive ...
Screening for bovine papillomavirus type 13 (BPV13) in a European population of sarcoid-bearing equids.
Equine veterinary journal    August 30, 2021   Volume 54, Issue 4 662-669 doi: 10.1111/evj.13501
Jindra C, Kamjunke AK, Jones S, Brandt S.Bovine papillomavirus types 1 and 2 (BPV1 and BPV2) are accepted aetiological agents of equine sarcoids. Recently, genetically similar BPV13 has been identified from equine sarcoids in Brazil. Objective: To determine whether BPV13 DNA can be also found in sarcoid-affected horses in Austria, and donkeys in Northern Italy and the UK, and should hence be considered in the context of vaccine-mediated sarcoid prevention. Methods: Cross sectional study. Methods: A total of 194 archival, equine and asinine DNA isolates derived from confirmedly delta-BPV-positive tumours were subjected to quality cont...
Data Collection for the Fourth Multicentre Confidential Enquiry into Perioperative Equine Fatalities (CEPEF4) Study: New Technology and Preliminary Results.
Animals : an open access journal from MDPI    August 30, 2021   Volume 11, Issue 9 doi: 10.3390/ani11092549
Gozalo-Marcilla M, Bettschart-Wolfensberger R, Johnston M, Taylor PM, Redondo JI.It is almost 20 years since the largest observational, multicentre study evaluating the risks of mortality associated with general anaesthesia in horses. We proposed an internet-based method to collect data (cleaned and analysed with R) in a multicentre, cohort, observational, analytical, longitudinal and prospective study to evaluate peri-operative equine mortality. The objective was to report the usefulness of the method, illustrated with the preliminary data, including outcomes for horses seven days after undergoing general anaesthesia and certain procedures using standing sedation. Within ...
Feeding and Management of Horses with and without Free Faecal Liquid: A Case-Control Study.
Animals : an open access journal from MDPI    August 30, 2021   Volume 11, Issue 9 2552 doi: 10.3390/ani11092552
Lindroth KM, Lindberg JE, Johansen A, Müller CE.Free faecal liquid (FFL) in horses is characterised by the excretion of faeces in two phases (one solid and one liquid), which may cause dermatitis on the hindlegs. The causes of FFL are not known. Results from previous studies have indicated that feed ration composition and management factors may play important roles in the occurrence of FFL. A case-control study was therefore performed in which data on feed rations, feeding practices and management factors were compared between horses with (case) and without (control) FFL on 50 private farms in Sweden and Norway. The comparisons show that ca...
Prevalence of anthelmintic resistant cyathostomins in Prince Edward Island, Canada.
Veterinary parasitology, regional studies and reports    August 30, 2021   Volume 26 100629 doi: 10.1016/j.vprsr.2021.100629
Butler AJ, Greenbank H, Parrish R, Nielsen MK, Stoughton WB.Cyathostomins are the most common parasites of adult horses worldwide. Currently, the three classes of anthelmintics used to treat cyathostomin infections includes benzimidazoles, pyrimidines and macrocyclic lactones. However, due to widespread overuse, cyathostomins have developed varying degrees of resistance to all classes of anthelmintics. Fecal egg count reduction tests (FECRT) are currently used to determine the presence of anthelmintic resistance (AR), while egg reappearance periods (ERP) are used to investigate early macrocyclic lactone resistance. The objective of this study was to in...
Global epidemiology of Equine Influenza viruses; “A possible emerging zoonotic threat in future” an extensive systematic review with evidence.
Brazilian journal of biology = Revista brasleira de biologia    August 27, 2021   Volume 83 e246591 doi: 10.1590/1519-6984.246591
Khan A, Mushtaq MH, Muhammad J, Ahmed B, Khan EA, Khan A, Zakki SA, Altaf E, Haq I, Saleem A, Warraich MA, Ahmed N, Rabaan AA.There are different opinions around the World regarding the zoonotic capability of H3N8 equine influenza viruses. In this report, we have tried to summarize the findings of different research and review articles from Chinese, English, and Mongolian Scientific Literature reporting the evidence for equine influenza virus infections in human beings. Different search engines i.e. CNKI, PubMed, ProQuest, Chongqing Database, Mongol Med, and Web of Knowledge yielded 926 articles, of which 32 articles met the inclusion criteria for this review. Analyzing the epidemiological and Phylogenetic data from ...
Vesicular Stomatitis Virus: From Agricultural Pathogen to Vaccine Vector.
Pathogens (Basel, Switzerland)    August 27, 2021   Volume 10, Issue 9 doi: 10.3390/pathogens10091092
Liu G, Cao W, Salawudeen A, Zhu W, Emeterio K, Safronetz D, Banadyga L.Vesicular stomatitis virus (VSV), which belongs to the Vesiculovirus genus of the family Rhabdoviridae, is a well studied livestock pathogen and prototypic non-segmented, negative-sense RNA virus. Although VSV is responsible for causing economically significant outbreaks of vesicular stomatitis in cattle, horses, and swine, the virus also represents a valuable research tool for molecular biologists and virologists. Indeed, the establishment of a reverse genetics system for the recovery of infectious VSV from cDNA transformed the utility of this virus and paved the way for its use as a vaccine ...
Clinical Research Abstracts of the British Equine Veterinary Association Congress 2021.
Equine veterinary journal    August 26, 2021   Volume 53 Suppl 55 5-39 doi: 10.1111/evj.13492
No abstract available
Clinical observations and molecular detection of Type-A influenza virus in some of the family Equidae in eastern Saudi Arabia winter-2019.
Veterinary research communications    August 26, 2021   Volume 45, Issue 4 423-430 doi: 10.1007/s11259-021-09822-2
Alnaeem A, Shawaf T, Ali AM, Hemida MG.In the current study, we are investigating the viral causes of some respiratory clinical signs in some animals belongs to the family Equidae in eastern Saudi Arabia (ESA) during winter- 2019. We observed the progression of severe respiratory clinical signs among some horses, donkeys, and ponies in the ESA. Animals showed rapid respiration, fever, nasal discharges (started as serous then changed into mucopurulent with the progression of the infection per some animals). We conducted a longitudinal study to monitor the progression of this outbreak. We conducted molecular surveillance for the infl...
Antibody activities in hyperimmune plasma against the Rhodococcus equi virulence -associated protein A or poly-N-acetyl glucosamine are associated with protection of foals against rhodococcal pneumonia.
PloS one    August 26, 2021   Volume 16, Issue 8 e0250133 doi: 10.1371/journal.pone.0250133
Kahn SK, Cywes-Bentley C, Blodgett GP, Canaday NM, Turner-Garcia CE, Vinacur M, Cortez-Ramirez SC, Sutter PJ, Meyer SC, Bordin AI, Vlock DR, Pier GB....The efficacy of transfusion with hyperimmune plasma (HIP) for preventing pneumonia caused by Rhodococcus equi remains ill-defined. Quarter Horse foals at 2 large breeding farms were randomly assigned to be transfused with 2 L of HIP from adult donors hyperimmunized either with R. equi (RE HIP) or a conjugate vaccine eliciting antibody to the surface polysaccharide β-1→6-poly-N-acetyl glucosamine (PNAG HIP) within 24 hours of birth. Antibody activities against PNAG and the rhodococcal virulence-associated protein A (VapA), and to deposition of complement component 1q (C՛1q) onto PNAG were d...
Genome Sequence of Equid Alphaherpesvirus 1 (EHV-1) from a Nasal Swab of a Swiss Horse Associated with a Major EHV-1 Outbreak following a Show Jumping Event in Valencia, Spain.
Microbiology resource announcements    August 26, 2021   Volume 10, Issue 34 e0073221 doi: 10.1128/MRA.00732-21
Kubacki J, Lechmann J, Fraefel C, Bachofen C.We present the genome sequence of equid alphaherpesvirus 1 (EHV-1) sequenced directly from the nasal swab of a Swiss horse that attended an international equestrian event in Valencia, Spain, the origin of an outbreak of neurological disorders in horses in several European countries in February 2021.
Molecular identification of Theileria equi, Babesia caballi, and Rickettsia in adult ticks from North of Xinjiang, China.
Veterinary medicine and science    August 26, 2021   Volume 7, Issue 6 2219-2224 doi: 10.1002/vms3.613
Zhang Y, Wen X, Xiao P, Fan X, Li M, Chahan B.Ticks in Xinjiang distribute widely and account for one third of China. Ticks can carry and transmit bacteria, virus, and parasite. However, the research of tick-borne pathogens in Xinjiang is rather little. To understand the situation of hard tick carry Theileria equi, Babesia caballi and Rickettsia spp. of Zhaosu and Altay in Xinjiang. In this study, 119 tick samples were obtained from horses in Xinjiang, China, Ticks were identified morphologically to determine species and PCR was used to investigate the situation of pathogens by hard ticks. One hundred and seven belong to Dermacentor margi...
Prevalence of Nasal Shedding of Equid Gammaherpesviruses in Healthy Swiss Horses.
Viruses    August 25, 2021   Volume 13, Issue 9 doi: 10.3390/v13091686
Scheurer L, Bachofen C, Hardmeier I, Lechmann J, Schoster A.Equid Gamma herpesvirus (eGHV) infections have been reported worldwide and may be correlated with clinical signs, e.g., affecting the respiratory tract in young horses. eGHV are shed by healthy horses as well as horses with respiratory tract disease. The prevalence in healthy Swiss horses is unknown to date but this data would provide valuable information for causal diagnosis in clinical cases and formulation of biosecurity recommendations. Nasal swabs from 68 healthy horses from 12 Swiss stables and 2 stables near the Swiss border region in Germany were analyzed by panherpes nested PCR. Posit...
Climatic factors affecting gestational length in mares under subtropical climate.
Journal of equine veterinary science    August 25, 2021   Volume 107 103751 doi: 10.1016/j.jevs.2021.103751
Moraes BSS, Curcio BR, Müller V, Bruhn FRP, Santos IPOD, Danielski JNS, Nogueira CEW.The aim of this study was (i) to evaluate the relationship of climatic factors with gestational length (GL) and (ii) to evaluate the relationship of sire, foal gender and maternal factors with GL in mares. Retrospective data from 470 gestations of 202 respective mares were collected from a Criollo breeding farm in the southern hemisphere. GL was considered as the interval between ovulation and parturition. Climatic and environmental data (temperature, relative humidity, daily sunshine hours, precipitation, temperature humidity index - THI) were obtained daily and the mean values for foaling mo...
Mosquito species associated with horses in Madagascar: a review of their vector status with regard to the epidemiology of West Nile fever.
Medical and veterinary entomology    August 24, 2021   Volume 36, Issue 1 1-13 doi: 10.1111/mve.12544
Tantely ML, Guis H, Randriananjantenaina I, Raharinirina MR, Velonirina HJ, Cardinale E, Raveloarijaona N, Cêtre-Sossah C, Garros C, Girod R.In Madagascar, the high West Nile virus (WNV) antibody prevalence reported in horse populations suggests a high level of vector-horse contact. This study aims to characterize the mosquito species usually involved in WNV transmission in horse stables in Madagascar. Five horse stables were investigated in October and November 2016 in five distinct inland areas. Mosquitoes were collected using double net traps baited with human, poultry or horse as well as light traps. Blood meal identification from engorged females was performed using host-specific PCRs. A total of 2898 adult mosquitoes were col...
Ecologic Determinants of West Nile Virus Seroprevalence among Equids, Brazil.
Emerging infectious diseases    August 24, 2021   Volume 27, Issue 9 2466-2470 doi: 10.3201/eid2709.204706
de Oliveira-Filho EF, Fischer C, Berneck BS, Carneiro IO, Kühne A, de Almeida Campos AC, Ribas JRL, Netto EM, Franke CR, Ulbert S, Drexler JF.Among 713 equids sampled in northeastern Brazil during 2013-2018, West Nile virus seroprevalence was 4.5% (95% CI 3.1%-6.3%). Mathematical modeling substantiated higher seroprevalence adjacent to an avian migratory route and in areas characterized by forest loss, implying increased risk for zoonotic infections in disturbed areas.
Identification of Multiple Blastocystis Subtypes in Domestic Animals From Colombia Using Amplicon-Based Next Generation Sequencing.
Frontiers in veterinary science    August 24, 2021   Volume 8 732129 doi: 10.3389/fvets.2021.732129
Higuera A, Herrera G, Jimenez P, García-Corredor D, Pulido-Medellín M, Bulla-Castañeda DM, Pinilla JC, Moreno-Pérez DA, Maloney JG, Santín M.... is frequently reported in fecal samples from animals and humans worldwide, and a variety of subtypes (STs) have been observed in wild and domestic animals. In Colombia, few studies have focused on the transmission dynamics and epidemiological importance of in animals. In this study, we characterized the frequency and subtypes of in fecal samples of domestic animals including pigs, minipigs, cows, dogs, horses, goats, sheep, and llama from three departments of Colombia. Of the 118 fecal samples included in this study 81.4% ( = 96) were positive for using a PCR that amplifies a fragment of t...
Molecular Detection and Phylogenetic Analysis of Tick-Borne Pathogens in Ticks Collected from Horses in the Republic of Korea.
Pathogens (Basel, Switzerland)    August 24, 2021   Volume 10, Issue 9 1069 doi: 10.3390/pathogens10091069
Seo HJ, Truong AT, Kim KH, Lim JY, Min S, Kim HC, Yoo MS, Yoon SS, Klein TA, Cho YS.The horse industry has grown rapidly as a leisure industry in the Republic of Korea (ROK) in parallel with an increased demand for equestrian activities. As a result, there has been an increase in horse breeding and equestrian population and potential exposure to ticks and their associated pathogens. To provide a better understanding of the potential disease risks of veterinary and medical importance, a study was conducted to determine the geographical distribution and diversity of ticks collected from horses and vegetation associated with horse racetracks/ranches throughout the ROK. This incl...
[Detection Frequency of Equine Rhinitis-B Virus in Nasal Swab Samples from Horses].
Tierarztliche Praxis. Ausgabe G, Grosstiere/Nutztiere    August 23, 2021   Volume 49, Issue 4 289 doi: 10.1055/a-1547-0270
Längerer L.Bernardino P, James K, Barnum S et al. What have we learned from 7 years of equine rhinitis B virus qPCR testing in nasal secretions from horses with respiratory signs. Vet Rec 2021; 188 (10): e26. DAS EQUINE RHINITIS-B-VIRUS (ERBV) HAT EINE HOHE INZIDENZ, IST IN SEINER BEDEUTUNG JEDOCH NUR WENIG ERFORSCHT. EINE INFEKTION MIT DEM ERBV äUßERT SICH IN SYMPTOMEN WIE FIEBER, ANOREXIE, LETHARGIE, NASENAUSFLUSS, HUSTEN, LYMPHADENOPATHIE UND ÖDEMEN DER DISTALEN GLIEDMAßEN. AUßERDEM TRETEN HäUFIG SUBKLINISCHE INFEKTIONEN AUF. DAS ZIEL DIESER STUDIE WAR, DIE HäUFIGKEIT DES NACHWEISES VON ERBV IM...
Home Sweet Home: New Insights Into the Location of Equine Premises in France and Keeping Habits to Inform Health Prevention and Disease Surveillance.
Frontiers in veterinary science    August 23, 2021   Volume 8 701749 doi: 10.3389/fvets.2021.701749
Farchati H, Merlin A, Saussac M, Dornier X, Dhollande M, Garon D, Tapprest J, Sala C.Identifying and tracking equines are key activities in equine health prevention. France is one of the few European countries with an operational centralized database that records information on equines, owners, and keepers but not on the location and keeping conditions of equines. The objective of our study was to collect information on keeping habits of equines and the relative location of a wide range of equines, owners, and keepers and discuss their implication for surveillance and control of outbreak improvement. A national email survey was conducted among the 1.9% of people registered as ...
[Confirmed case of a West Nile virus infection in a horse with minimal neurological signs and a favorable clinical outcome].
Tierarztliche Praxis. Ausgabe G, Grosstiere/Nutztiere    August 23, 2021   Volume 49, Issue 4 281-286 doi: 10.1055/a-1519-4547
Trachsel DS, Drozdzewska K, Bergmann F, Ziegler U, Gehlen H.West Nile virus (WNV) is a mosquito-borne viral pathogen of global importance and is considered to be the most widespread flavivirus. In Germany, first infections with WNV were detected in 2018 and it is expected for these to become more frequent in consequence to warmer winters followed by a rainy/humid springtime. WNV is maintained in an enzootic cycle between ornithophilic mosquitoes and certain wild bird species. Humans and horses are so-called "dead-end hosts" of a WNV infection. They frequently do not fall ill, however occasionally develop overt infections ranging from mild febrile sympt...
Risk Factors for Jockey Falls in Japanese Thoroughbred Flat Racing.
Journal of equine veterinary science    August 21, 2021   Volume 106 103749 doi: 10.1016/j.jevs.2021.103749
Mizobe F, Takahashi Y, Kusano K.Jockey safety is of paramount importance from welfare perspective and public perception. This retrospective case-control study aims to identify risk factors associated with jockey falls (JF) in flat races of Japan Racing Association (JRA). JF in 715,210 race starts by 74,328 horses at 10 racecourses from 2003 to 2017 were reviewed. Data were extracted from a database maintained by JRA and from official accident reports issued by race stewards. Seventeen possible risk factors were evaluated using multivariable logistic regression, to identify those significantly associated with JF. A total of 9...
Factors Associated With the Development and Prevalence of Abnormal Behaviors in Horses: Systematic Review With Meta-Analysis.
Journal of equine veterinary science    August 21, 2021   Volume 106 103750 doi: 10.1016/j.jevs.2021.103750
Seabra JC, Dittrich JR, Vale MMD.Researchers believe that the development and prevalence of abnormal behaviors in horses may be caused by several environmental and biological factors, and the literature offers numerous reports that discuss the causes and effects of stereotypies in these animals. In this light, this study aimed to conduct a systematic review and meta-analysis of the scientific literature, summarizing the main risk factors associated with the development of abnormal behaviors in horses. The searches were conducted over the course of four years in Portuguese, Spanish, and English. The publications reviewed were ...
Equine Influenza Virus and Vaccines.
Viruses    August 20, 2021   Volume 13, Issue 8 1657 doi: 10.3390/v13081657
Oladunni FS, Oseni SO, Martinez-Sobrido L, Chambers TM.Equine influenza virus (EIV) is a constantly evolving viral pathogen that is responsible for yearly outbreaks of respiratory disease in horses termed equine influenza (EI). There is currently no evidence of circulation of the original H7N7 strain of EIV worldwide; however, the EIV H3N8 strain, which was first isolated in the early 1960s, remains a major threat to most of the world's horse populations. It can also infect dogs. The ability of EIV to constantly accumulate mutations in its antibody-binding sites enables it to evade host protective immunity, making it a successful viral pathogen. C...
Eco-epidemiology of equine piroplasmosis and its associated tick vectors in Europe: A systematic literature review and a meta-analysis of prevalence.
Transboundary and emerging diseases    August 17, 2021   Volume 69, Issue 5 2474-2498 doi: 10.1111/tbed.14261
Nadal C, Bonnet SI, Marsot M.When studying a vector-borne disease, an eco-epidemiological approach is vital for a comprehensive understanding of how the pathogen circulates amongst populations. Equine piroplasmosis (EP), a tick-borne disease caused by the protozoans Babesia caballi and Theileria equi, is endemic in the Mediterranean basin of Europe and causes both animal health and economic issues for the equine sector. With no vaccine available, defining the episystem of the disease can help to identify which components of the host-pathogen-vector-environment system to target to improve preventive measures. In this syste...
Genome-informed characterisation of antigenic drift in the haemagglutinin gene of equine influenza strains circulating in the United States from 2012 to 2017.
Transboundary and emerging diseases    August 17, 2021   Volume 69, Issue 4 e52-e63 doi: 10.1111/tbed.14262
Lee K, Pusterla N, Barnum SM, Lee DH, Martínez-López B.Equine influenza virus (EIV) is a major infectious pathogen causing significant respiratory signs in equids worldwide. Voluntary surveillances in the United States recently reported EIV detection in horses with respiratory signs even with adequate vaccine protocols and biosecurity programs and posed a concern about suboptimal effectiveness of EIV vaccine in the United States. This study aims to determine the genetic characteristics of 58 field EIV H3N8 strains in the United States from 2012 to 2017 using the phylogenetic analysis based on the haemagglutinin (HA) gene. Amino acid substitution a...
A cross-sectional study of Leishmania spp. in draft horses from the Distrito Federal, Brazil: Seroprevalence, spatial distribution, and associated factors.
Preventive veterinary medicine    August 17, 2021   Volume 195 105467 doi: 10.1016/j.prevetmed.2021.105467
Biral NV, Azevedo Santos H, Senne NA, Paulino PG, Camilo TA, Tassinari WS, Silva VL, Santos FN, Angelo IDC.Equine leishmaniasis is a neglected tropical disease caused by the protozoan of the Leishmania genus, and it has been reported in several countries around the world, especially Brazil. Therefore, the present investigation aims to conduct a cross-sectional study to determine the prevalence, spatial distribution, and associated factors with seropositivity for Leishmania spp. in draft horses from the Distrito Federal, Brazil. The serological survey was conducted on 411 animals, employing the Indirect Immunofluorescence Test (IFA) and Enzyme-Linked Immunosorbent Assay (ELISA). The Kappa (κ) and g...
Summer Sores Secondary to a Hoof Crack in an Andalusian Stallion.
Pathogens (Basel, Switzerland)    August 16, 2021   Volume 10, Issue 8 doi: 10.3390/pathogens10081038
Palozzo A, Traversa D, Marruchella G, Celani G, Morelli S, Petrizzi L.Cutaneous habronemosis in horses is caused by larvae of the spirurid nematodes Habronema microstoma and Habronema muscae. These lesions, also known as "summer sores'', are often severe and disfiguring. Although Habronema-caused lesions at the coronary grooves have been described, cases of hoof cracks with secondary summer sores have never been reported. The present case describes clinic-pathological and surgical features of a quarter crack case complicated by cutaneous habronemosis at the dermal layers. A 15-year-old, Andalusian stallion was referred to the Veterinary Teaching Hospital of the ...
Equine attachment site preferences and seasonality of common North American ticks: Amblyomma americanum, Dermacentor albipictus, and Ixodes scapularis.
Parasites & vectors    August 14, 2021   Volume 14, Issue 1 404 doi: 10.1186/s13071-021-04927-8
Sundstrom KD, Lineberry MW, Grant AN, Duncan KT, Ientile MM, Little SE.Ticks are common on horses, but recent publications characterizing equine tick infestations in North America are lacking. Methods: To further understand attachment site preferences of common ticks of horses, and to document the seasonality of equine tick infestation in northeastern Oklahoma, horses from eight farms were evaluated twice a month over a 1-year period. Each horse was systematically inspected beginning at the head and moving caudally to the tail. Attachment sites of ticks were recorded and all ticks collected were identified to species and stage. Results: Horses (26 males and 62 fe...
New Parvoviruses and Picornavirus in Tissues and Feces of Foals with Interstitial Pneumonia.
Viruses    August 14, 2021   Volume 13, Issue 8 1612 doi: 10.3390/v13081612
Altan E, Hui A, Li Y, Pesavento P, Asín J, Crossley B, Deng X, Uzal FA, Delwart E.Six foals with interstitial pneumonia of undetermined etiology from Southern California were analyzed by viral metagenomics. Spleen, lung, and colon content samples obtained during necropsy from each animal were pooled, and nucleic acids from virus-like particles enriched for deep sequencing. The recently described equine copiparvovirus named eqcopivirus, as well as three previously uncharacterized viruses, were identified. The complete ORFs genomes of two closely related protoparvoviruses, and of a bocaparvovirus, plus the partial genome of a picornavirus were assembled. The parvoviruses were...
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