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Topic:Genetics

Genetics in horses encompasses the study of hereditary traits and the genetic makeup that influences various characteristics and health conditions in equine populations. This field involves the analysis of genes and their functions, inheritance patterns, and the impact of genetic variations on traits such as coat color, performance ability, and susceptibility to diseases. Research in equine genetics employs techniques such as genome mapping, sequencing, and genetic testing to identify specific genes and mutations associated with these traits. This page gathers peer-reviewed research studies and scholarly articles that explore the genetic basis of equine traits, the methodologies used in genetic research, and the implications for breeding, health management, and conservation of horse breeds.
Evaluation of Bacterial Composition and Viability of Equine Feces after Processing for Transplantation.
Microorganisms    January 17, 2023   Volume 11, Issue 2 doi: 10.3390/microorganisms11020231
Loublier C, Taminiau B, Heinen J, Lecoq L, Amory H, Daube G, Cesarini C.Fecal microbiota transplantation (FMT) has been used empirically for decades in equine medicine to treat intestinal dysbiosis but evidence-based information is scarce. This in vitro study aimed at assessing the effect of a commonly used pre-FMT processing method on the bacterial composition and viability of the fecal filtrate. Three samples of fresh equine manure (T0) were processed identically: the initial manure was mixed with 1 L of lukewarm water and chopped using an immersion blender to obtain a mixture (T1), which was left uncovered during 30 min (T2) and percolated through a sieve to ob...
Differential Expression of Innate and Adaptive Immune Genes during Acute Physical Exercise in American Quarter Horses.
Animals : an open access journal from MDPI    January 16, 2023   Volume 13, Issue 2 308 doi: 10.3390/ani13020308
Wilson J, De Donato M, Appelbaum B, Garcia CT, Peters S.Overtraining syndrome (OTS) is the reduction in performance due to excess training and lack of proper recovery, which can lead to a chronic deprivation of energy and reduction in the repair of damage that can accumulate over time. Here, the effect of acute, intense physical exercise on the expression of innate and adaptive immune genes in 12 racing-bred American Quarter Horses, after resting for 3 days and immediately after intense exercise for 1.8 miles were compared. The expression of 84 genes related to innate and adaptive immune responses was analyzed. Significant variation among individua...
Initial investigation of molecular phenotypes of airway mast cells and cytokine profiles in equine asthma.
Frontiers in veterinary science    January 11, 2023   Volume 9 997139 doi: 10.3389/fvets.2022.997139
Woodrow JS, Hines M, Sommardahl C, Flatland B, Lo Y, Wang Z, Sheats MK, Lennon EM.Equine asthma is a naturally occurring lung disease characterized by chronic, partially reversible airway obstruction, pulmonary remodeling, and lower airway inflammation. Asthma is currently divided into two major groups, mild to moderate asthma (mEA) and severe asthma (sEA), but further subtyping by phenotype (i.e., clinical presentation) and/or endotype (i.e., cellular mechanisms) may be warranted. For this study, we were interested in further investigation of cellular and inflammatory characteristics of EA, including airway mast cells. The purpose of this study was to: (1) compare mast cel...
Equine Melanocytic Tumors: A Narrative Review.
Animals : an open access journal from MDPI    January 10, 2023   Volume 13, Issue 2 doi: 10.3390/ani13020247
Pimenta J, Prada J, Cotovio M.Adult grey horses have a high incidence of melanocytic tumors. This article narratively reviews the role of some genetic features related to melanoma formation in horses, such as STX17 mutation, ASIP or MITF alterations, and the link between the graying process and the development of these tumors. A clear system of clinical and pathological classification of melanocytic tumors in naevus, dermal melanoma, dermal melanomatosis and anaplastic malignant melanoma is provided. Clinical and laboratorial methods of diagnosing are listed, with fine needle aspiration and histopathology being the most re...
Detection of Mycoplasma spp. in horses with respiratory disorders.
Equine veterinary journal    January 9, 2023   Volume 55, Issue 5 747-754 doi: 10.1111/evj.13918
Martineau M, Castagnet S, Kokabi E, Tricot A, Jaÿ M, Léon A, Tardy F.Bacteria belonging to the genus Mycoplasma are small-sized, have no cell walls and small genomes. They commonly cause respiratory disorders in their animal hosts. Three species have been found in the respiratory tract of horses worldwide, that is., Mycoplasma (M.) equirhinis, M. pulmonis and M. felis, but their role in clinical cases remains unclear. Objective: The aim of this study was to i) develop and validate tools to detect, isolate and identify different Mycoplasma spp. strains in clinical equine respiratory-tract specimens and ii) subsequently define the prevalence of the three species ...
Surveillance of Getah virus in mosquitoes and racehorses from 2016 to 2019 at a training center in Ibaraki Prefecture, Japan, a site of several previous Getah virus outbreaks.
Archives of virology    January 7, 2023   Volume 168, Issue 2 35 doi: 10.1007/s00705-022-05631-3
Ochi A, Bannai H, Aonuma H, Kanuka H, Uchida-Fujii E, Kinoshita Y, Ohta M, Kambayashi Y, Tsujimura K, Ueno T, Nemoto M.Mosquitoes and EDTA-treated blood samples from febrile racehorses were investigated for Getah virus infection from 2016 to 2019 at the Miho Training Center, where several outbreaks of Getah virus have occurred. We collected 5557 mosquitoes and 331 blood samples from febrile horses in this study. The most frequently captured mosquito species was Culex tritaeniorhynchus (51.9%), followed by Aedes vexans nipponii (14.2%) and Anopheles sinensis (11.2%). Getah virus was detected in mosquitoes (Aedes vexans nipponii) in 2016 (strain 16-0810-26) but not in 2017-2019. Six of 74 febrile horses in 2016 ...
Tamoxifen triggers the in vitro release of neutrophil extracellular traps in healthy horses.
Frontiers in veterinary science    January 6, 2023   Volume 9 1025249 doi: 10.3389/fvets.2022.1025249
Salinas C, Barriga K, Albornoz A, Alarcon P, Quiroga J, Uberti B, Sarmiento J, Henriquez C, Ehrenfeld P, Burgos RA, Moran G.Neutrophils display an array of biological functions including the formation of neutrophil extracellular traps (NETs), web-like structures specialized in trapping, neutralizing, killing and preventing microbial dissemination within the host. However, NETs contribute to a number of inflammatory pathologies, including severe equine asthma. Tamoxifen (TX) is a selective estrogen receptor modulator which belongs to the triphenylethyllenes group of molecules, and which is used as a treatment in all stages of estrogen-positive human breast cancer. Our previous results suggest that tamoxifen can modu...
Gut microbial community structure and function of Przewalski’s horses varied across reintroduced sites in China.
Integrative zoology    January 6, 2023   doi: 10.1111/1749-4877.12699
Tang L, Yan L, Jia H, Xiong Y, Ma X, Chu H, Sun Z, Wang L, Shalitanati M, Li K, Hu D, Zhang D.Host-associated microbiota can significantly impact host fitness. Therefore, naturally occurring variations in microbiota may influence the health and persistence of their hosts. This finding is particularly important in reintroduced animals, as they typically experience habitat changes during translocations. However, little is known about how microbiomes are altered in response to conservation translocation. Here, we accessed the gut microbiome of Przewalski's horse (Equus przewalskii) populations in China from three nature reserves (i.e. Xinjiang Kalamaili Nature Reserve, KNR; Dunhuang Xihu ...
Developmental dynamics and survival characteristics of the common horse bot flies (Diptera, Gasterophilidae, Gasterophilus) in desert steppe.
Veterinary parasitology    January 6, 2023   Volume 315 109870 doi: 10.1016/j.vetpar.2023.109870
Zhang K, Ju Z, Zhang Y, Wang C, Mubalake S, Hu D, Zhang D, Li K, Chu H.The genus Gasterophilus (Diptera, Gastrophilidae) is an obligate parasite of the equine family that causes widespread myiasis in desert steppe. Based on four common naturally excreted Gasterophilus larvae collected systematically in the Karamaili Ungulate Nature Reserve from March to September 2021, this paper studies the population dynamics and ontogenetic laws of horse flies, and discuss the coexistence pattern and population dynamics prediction of horse flies. The results showed that the Gasterophilus larvae had obvious concentrated development period, and the time of population peaks was d...
Unique insertion/deletion polymorphisms within histidine-rich region of histidine-rich glycoprotein in Thoroughbred horses.
Scientific reports    January 6, 2023   Volume 13, Issue 1 300 doi: 10.1038/s41598-023-27374-0
Muko R, Sunouchi T, Urayama S, Toishi Y, Kusano K, Sato H, Muranaka M, Shin T, Oikawa MA, Ojima Y, Ali M, Nomura Y, Matsuda H, Tanaka A.Histidine-rich glycoprotein (HRG) is abundant plasma protein with various effects on angiogenesis, coagulation, and immune responses. Previously, we identified the base and amino acid sequences of equine HRG (eHRG) and revealed that eHRG regulates neutrophil functions. In this study, we first conducted a large-scale gene analysis with DNA samples extracted from 1700 Thoroughbred horses and identified unique insertion/deletion polymorphisms in the histidine-rich region (HRR) of eHRG. Here we report two types of polymorphisms (deletion type 1 [D1] and deletion type 2 [D2]) containing either a 45...
Vitamin E depletion is associated with subclinical axonal degeneration in juvenile horses.
Equine veterinary journal    January 4, 2023   Volume 55, Issue 5 884-890 doi: 10.1111/evj.13907
Donnelly CG, Finno CJ.Phosphorylated neurofilament heavy, a marker of neuroaxonal damage, is increased in horses with equine neuroaxonal dystrophy. However, the temporal dynamics of this biomarker during the post-natal risk period are not understood. Objective: To measure serum and cerebrospinal fluid phosphorylated neurofilament heavy concentrations in juvenile foals across the post-natal window of susceptibility for equine neuroaxonal dystrophy. Methods: Case-control in vivo experimental study. Methods: Concentrations of phosphorylated neurofilament heavy were measured using frozen serum and cerebrospinal fluid c...
Corrigendum: Gene therapy approaches for equine osteoarthritis.
Frontiers in veterinary science    January 4, 2023   Volume 9 1117776 doi: 10.3389/fvets.2022.1117776
Thampi P, Samulski RJ, Grieger JC, Phillips JN, McIlwraith CW, Goodrich LR.[This corrects the article DOI: 10.3389/fvets.2022.962898.].
Immunogenicity analysis of BPV-1 positive equine sarcoid-derived cultured fibroblasts.
Veterinary immunology and immunopathology    January 4, 2023   Volume 256 110547 doi: 10.1016/j.vetimm.2023.110547
Gysens L, Depuydt E, Patruno M, Haspeslagh M, Spaas JH, Martens A.Sarcoids are the most common equine skin tumours Although they do not metastasize, they can be locally aggressive and cause significant clinical symptoms in affected horses. Despite being common, very little is known about the host immune response and the biological mechanisms underlying persistence and recurrence of equine sarcoids. The latter reflects the need for further research in this field. This in-vitro study used sarcoid explants from horses with naturally occurring sarcoids (n = 12) to evaluate the induction of a humoral immune response directed against equine sarcoid-derived bovin...
The complete ITS2 barcoding region for Strongylus vulgaris and Strongylus edentatus.
Veterinary research communications    January 4, 2023   Volume 47, Issue 3 1767-1771 doi: 10.1007/s11259-022-10067-w
Halvarsson P, Tydén E.Gastrointestinal nematode parasites are of major concern for horses, where Strongylus vulgaris is considered the most pathogenic among the Strongylus species. Diagnosis of S. vulgaris infections can be determined with next generation sequencing techniques, which are inherently dependent on reference sequences. The best marker for parasitic nematodes is internal transcribed spacer 2 (ITS2) and we provide the first complete ITS2 sequences from five morphologically identified S. vulgaris and additional sequences from two S. edentatus. These sequences have high similarity to already published part...
First sex modification case in equine cloning.
PloS one    January 4, 2023   Volume 18, Issue 1 e0279869 doi: 10.1371/journal.pone.0279869
Suvá M, Arnold VH, Wiedenmann EA, Jordan R, Galvagno E, Martínez M, Vichera GD.Somatic cell nuclear transfer (SCNT) is an asexual reproductive technique where cloned offspring contain the same genetic material as the original donor. Although this technique preserves the sex of the original animal, the birth of sex-reversed offspring has been reported in some species. Here, we report for the first time the birth of a female foal generated by SCNT of a male nuclear donor. After a single SCNT procedure, 16 blastocysts were obtained and transferred to eight recipient mares, resulting in the birth of two clones: one male and one female. Both animals had identical genetic prof...
Double and quadruple deletion mutant of EHV-1 is highly attenuated and induces optimal immune response.
Vaccine    January 4, 2023   Volume 41, Issue 5 1081-1093 doi: 10.1016/j.vaccine.2022.12.044
Balena V, Pradhan SS, Bera BC, Anand T, Sansanwal R, Khetmalis R, Madhwal A, Bernela M, Supriya K, Pavulraj S, Tripathi BN, Virmani N.Equid alphaherpesvirus 1 (EHV-1) infection causes significant health problems in equines. The EHV-1 infection leads to abortion storm in mares, respiratory disease and myeloencephalopathy. Despite the wide use of vaccines, the outbreaks of EHV-1 infections keep occurring globally, suggesting the need for the development of improved vaccines. Gene deletion attenuated mutant viruses could be a good candidate for the development of modified live vaccines. Here, we report the generation of mutant EHV-1 by deleting virulence (glycoprotein E & internal repeat 6; IR6) and immune evasive (pUL43 &a...
Blood types and antibody profiles of Straight Egyptian Arabian horses in Qatar: Preliminary results.
Journal of equine veterinary science    January 3, 2023   Volume 122 104209 doi: 10.1016/j.jevs.2022.104209
Mattei D, Fenn MS, Caraguel C, Vinardell T.The characterization of the blood groups, antibody profiles, and its distribution pattern among different horse breeds and geographic locations, can be very useful in life-threatening situations where a blood transfusion is needed, and compatibility tests are not readily available. This study estimated the distribution of blood types and antibody profiles in Straight Egyptian Arabian horses from Qatar. A total of 20 Straight Egyptian Arabian horses, from multiple origins and genetic background were included. Venous blood from each horse was typed and screened for anti-red blood cell (RBC) hemo...
Lethal variants of equine pregnancy: is it the placenta or foetus leading the conceptus in the wrong direction?
Reproduction, fertility, and development    January 3, 2023   Volume 35, Issue 2 51-69 doi: 10.1071/RD22239
Shilton CA, Kahler A, Roach JM, Raudsepp T, de Mestre AM.Embryonic and foetal loss remain one of the greatest challenges in equine reproductive health with 5-10% of established day 15 pregnancies and a further 5-10% of day 70 pregnancies failing to produce a viable foal. The underlying reason for these losses is variable but ultimately most cases will be attributed to pathologies of the environment of the developing embryo and later foetus, or a defect intrinsic to the embryo itself that leads to lethality at any stage of gestation right up to birth. Historically, much research has focused on the maternal endometrium, endocrine and immune responses ...
A one-health lens offers new perspectives on the importance of endocrine disorders in the equine athlete.
Journal of the American Veterinary Medical Association    January 2, 2023   Volume 261, Issue 2 153-164 doi: 10.2460/javma.22.11.0485
Manfredi JM, Jacob S, Norton E.Endocrine disorders are associated with joint pain and tendon injury in humans, but the effects in the horse are only starting to be understood. Similar patterns of clinical signs and injury appear to affect horses and humans for both orthopedic and endocrine disorders, supporting the use of a one-health approach to tackle these issues. In this Currents in One Health, we will discuss common equine endocrinopathies, current testing recommendations, dietary management, genetic predispositions, and endocrine disorders' effects on performance. Our aim is to use a one-health lens to describe curren...
A New Intra-Breed Type, “Mamyr-Aktobe,” of the Kushum Breed of Horses of the Aktobe Population.
Archives of Razi Institute    December 31, 2022   Volume 77, Issue 6 2273-2279 doi: 10.22092/ARI.2022.360058.2539
The Kushum breed is one of the top breeds in the structure of horse breeds in the Aktobe region. In terms of numbers, it ranks third after the Kazakh and Mugalzhar breeds. The Kushum breed in the Aktobe region compares favorably with a number of horse-draft factory breeds in terms of early maturity, fertility, high meat, milk productivity, and economy of keeping. This article describes a new intra-breed type, the "Mamyr-Aktobe" type of the Kushum horse breed of the Aktobe population. The structure of the intra-breed type of Mamyr-Aktobe of the Kushum breed includes three factory lines of stall...
Antimicrobial Resistance and Genetic Diversity of Pseudomonas aeruginosa Strains Isolated from Equine and Other Veterinary Samples.
Pathogens (Basel, Switzerland)    December 30, 2022   Volume 12, Issue 1 64 doi: 10.3390/pathogens12010064
Pottier M, Castagnet S, Gravey F, Leduc G, Sévin C, Petry S, Giard JC, Le Hello S, Léon A. is one of the leading causes of healthcare-associated infections in humans. This bacterium is less represented in veterinary medicine, despite causing difficult-to-treat infections due to its capacity to acquire antimicrobial resistance, produce biofilms, and persist in the environment, along with its limited number of veterinary antibiotic therapies. Here, we explored susceptibility profiles to antibiotics and to didecyldimethylammonium chloride (DDAC), a quaternary ammonium widely used as a disinfectant, in 168 strains isolated from animals, mainly Equidae. A genomic study was performed on...
Proteomic Differences Between the Ovulatory and Anovulatory Sides of the Mare’s Follicular and Oviduct Fluid.
Journal of equine veterinary science    December 30, 2022   Volume 121 104207 doi: 10.1016/j.jevs.2022.104207
Shen Y, Ulaangerel T, Ren H, Davshilt T, Yi M, Li X, Xing J, Du M, Bai D, Dugarjav M, Bou G.The follicular fluid and oviduct fluid play major roles in oocyte maturation, sperm activation, and fertilization. To better understand the physiological environments for equine oocyte maturation and fertilization, here we conducted the proteome analysis and comparison on follicular fluids and oviduct fluids from the ovulatory side and the anovulatory side. The results showed that there is no significant difference between two side oviduct fluids, but a total of 71 differential abundance proteins (DAPs) were identified between two side follicular fluids, of which 9 are up-regulated and 62 are ...
Results of a Clinical Trial Showing Changes to the Faecal Microbiome in Racing Thoroughbreds after Feeding a Nutritional Supplement.
Veterinary sciences    December 30, 2022   Volume 10, Issue 1 27 doi: 10.3390/vetsci10010027
Adams VJ, LeBlanc N, Penell J.Next-generation sequencing (NGS) has been used to evaluate the effect of various interventions on the equine microbiome. The aim of this randomised blinded clinical trial was to determine if a prebiotic nutritional supplement would result in a change from baseline in the faecal microbiome composition of racing Thoroughbred horses in training being fed a high concentrate/grain-based diet to be more similar to that found in forage fed/pasture grazed horses. Thirty-two horses on one training yard were randomised to either receive the supplement or not. Faecal samples were collected at baseline, 6...
The Enrichment of Specific Hair Follicle-Associated Cell Populations in Plucked Hairs Offers an Opportunity to Study Gene Expression Underlying Hair Traits.
International journal of molecular sciences    December 29, 2022   Volume 24, Issue 1 561 doi: 10.3390/ijms24010561
Naboulsi R, Cieślak J, Headon D, Jouni A, Negro JJ, Andersson G, Lindgren G.Gene expression differences can assist in characterizing important underlying genetic mechanisms between different phenotypic traits. However, when population-dense tissues are studied, the signals from scarce populations are diluted. Therefore, appropriately choosing a sample collection method that enriches a particular type of effector cells might yield more specific results. To address this issue, we performed a polyA-selected RNA-seq experiment of domestic horse () plucked-hair samples and skin biopsies. Then, we layered the horse gene abundance results against cell type-specific marker ge...
Genetic diversity analysis and parentage verification of Taishu horses using 31 microsatellites.
Journal of equine science    December 28, 2022   Volume 33, Issue 4 63-69 doi: 10.1294/jes.33.63
Yoshihara T, Kikuchi M, Akiba Y, Horiguchi M, Takasu M, Tozaki T.The Taishu horse in Tsushima is one of eight Japanese native breeds. The breed is on the verge of extinction due to a rapid decrease in numbers since the 1960s owing to motorization in Japan. In this study, we aimed to confirm the pedigree information of 52 horses by genotyping 31 microsatellites in order to avoid inbreeding. Parentage verification failed to identify genetic contradictions among trios (sires, dams, and foals) registered with the Japan Equine Affairs Association (JEAA). Pedigree information registered at the JEAA was obtained and adequately understood. Additionally, the genetic...
Integrating genome-wide methylation and transcriptome-wide analyses to reveal the genetic mechanism of milk traits in Kazakh horses.
Gene    December 24, 2022   Volume 856 147143 doi: 10.1016/j.gene.2022.147143
Liu L, Zhang Y, Ma H, Cao H, Liu W.Horse Milk has important quantitative characteristics and high economic value. However, the DNA methylation regulators involved in horse milk traits have not been clarified. To explore the important role of genome-wide DNA methylation in regulating equine milk yield, this study systematically investigated the genome-wide DNA methylation profiles of Kazakh horse blood by comparing a high-production group (HP, average daily milk yield of 7.5 kg) and low-production group (LP, average daily milk yield of 3.2 kg) using deep whole-genome bisulfite sequencing. First, both groups showed similar prop...
Follicle Selection in Mares as a Model for Illustrating the Many Hormonal and Biochemical Interactions That Drive a Single Physiological Mechanism.
Journal of equine veterinary science    December 22, 2022   Volume 121 104196 doi: 10.1016/j.jevs.2022.104196
Ginther OJ.The mechanism for selection of the future dominant or ovulatory follicle in mares involves a relatively abrupt separation in growth rates between the future dominant follicle and several subordinate follicles and is termed diameter deviation. The event is used to illustrate that a coordinated complex of many follicular, hormonal, and biochemical factors interact and interbalance during a single physiological mechanism. For example, a positive effect of follicle stimulating hormone (FSH) on development of all follicles during the growing phase can later involve a positive effect of luteinizing ...
Mitochondrial Genomes of the American Dog Tick (Dermacentor variabilis) Isolated from Horses in the Midwestern United States.
Microbiology resource announcements    December 21, 2022   Volume 12, Issue 1 e0033022 doi: 10.1128/mra.00330-22
Reynolds S, Hedberg M, Herrin B, Jesudoss Chelladurai JRJ.Here, we report two complete and three partial mitochondrial genome sequences of Dermacentor variabilis specimens collected from horses in the United States. The complete genomes are 14,837 bp long and contain 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The sequences have been deposited under GenBank accession numbers ON052120 to ON052124.
Maternal allogeneic cancellous bone graft for the treatment of osteitis along the physeal scar of the proximal metatarsus in a foal.
Veterinary surgery : VS    December 21, 2022   Volume 52, Issue 3 467-477 doi: 10.1111/vsu.13926
Sauer FJ, Verhaar N, Geburek F.To describe the treatment and outcome of a foal with a fresh allogenic cancellous bone graft after surgical debridement of a traumatic septic osteitis. Methods: A neonatal Quarter Horse foal. Methods: Case report. Methods: The foal sustained a traumatic laceration exposing the proximal third metatarsal bone. One week after surgical debridement and closure, radiographic signs of septic osteitis were noted along the physeal scar. The lesion was debrided, and antimicrobial therapy was implemented. The infection resolved but left a large defect in the metaphysis and epiphysis. Grafting was indic...
Whole-Genome Sequence Analysis Reveals the Origin of the Chakouyi Horse.
Genes    December 19, 2022   Volume 13, Issue 12 doi: 10.3390/genes13122411
Li Y, Liu Y, Wang M, Lin X, Li Y, Yang T, Feng M, Ling Y, Zhao C.The Chakouyi horse is an ancient Chinese indigenous horse breed distributed in Gansu Province in northwestern China, and is also one of the key breeds protected by the government. However, the origin of the Chakouyi horse remains unclear. As it is distributed in a key region of the Silk Road, it was speculated that the origin of the Chakouyi horse might involve the foreign horse breeds found along this ancient commercial artery. In this study, whole-genome resequencing data of 12 horse breeds, including both indigenous and foreign horses, were applied to reveal the genetic relationships betwee...
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