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Topic:Animal Science
Animal Science and horses encompass the study of equine biology, physiology, and management practices aimed at understanding and improving horse health, welfare, and performance. This field integrates various scientific disciplines, including genetics, nutrition, reproduction, and behavior, to address the needs of horses in diverse contexts such as sports, work, and companionship. Research in this area often focuses on optimizing feeding strategies, enhancing breeding programs, and developing effective health management protocols. Additionally, studies explore the genetic factors influencing traits such as athleticism and disease resistance, as well as the impact of environmental and management conditions on horse behavior and welfare. This page gathers peer-reviewed research and scholarly articles that investigate the scientific principles underpinning equine science and their practical applications in horse care and management.
Characterization of Lipizzan Horse Population From Lipica Stud Using Molecular and Pedigree Data. In this study, we analysed genetic diversity, population structure and inbreeding in the Lipica Stud Farm population by integrating pedigree records, microsatellite (STR) and genome-wide SNP data generated using the GGP Equine 70K BeadChip. The dataset comprised 233 horses from the Lipica Stud Farm, which served as the reference population for comparisons of diversity estimates based on pedigree-, STR- and SNP data. The STR data were originally generated for routine parentage verification and were included here to compare inbreeding estimates based on pedigree, STR and genome-wide SNP data. Pe...
Supplementation of IVM media with equine follicular fluid of large follicles increases blastocyst yield in equine ICSI programs. Despite advances in the use of intracytoplasmic sperm injection (ICSI) for the in vitro production of equine embryos, oocyte maturation and competence to sustain pre-implantation embryo development remain significant challenges. This study evaluated the supplementation of the in vitro maturation (IVM) medium with equine follicular fluid (eFF), obtained from young mares (2-15 years old) with oocyte-to-blastocyst conversion rates >22%, as a strategy to improve oocyte developmental competence. In the first experiment, IVM medium was supplemented with 10% eFF collected from ovarian follicles of di...
Choice for the horse is paramount: Owners’ experiences in facilitating friends, forage, and freedom in their management practices. Owned horses rely on people for their behavioural needs, such as access to conspecifics, constant access to low nutrient density, fibrous forage and freedom of movement; otherwise known as friends, forage and freedom (3Fs). Restricting the 3Fs prevents horses from achieving optimal welfare. We carried out 14 semi-structured interviews in the UK and Ireland to examine horse owners' experiences, attitudes and beliefs around the provision of the 3Fs. Most participants were female, aged from 25 to 65 years, resident in the UK and kept their horse at a livery facility. A reflexive thematic analysis...
Genome-Wide Identification and Characterization of the Wnt Gene Family in Donkey (Equus asinus): Phylogenetic Analysis and Expression Profiling. The gene family encodes highly conserved signaling molecules involved in vertebrate development, tissue homeostasis, and cell fate regulation. However, the evolutionary characteristics and potential biological functions of genes in the domestic donkey () remain poorly understood. In this study, we performed the first genome-wide identification and comprehensive characterization of the donkey gene family. A total of 19 genes were identified, consistent with the conserved repertoire reported in other mammalian species. Phylogenetic and synteny analyses revealed strong evolutionary conservat...
Phased T2T horse and donkey assemblies from a mule reveal peculiar equid centromere evolution. We present telomere-to-telomere genome assemblies of a Thoroughbred horse and a donkey derived from their mule offspring. Now adopted and annotated by NCBI as reference genomes, these assemblies resolve previously inaccessible regions, including satellite arrays, duplications, and telomeres. Equids are known to exhibit an uncoupling between satellite DNA and centromeric function. The completeness of these assemblies enabled annotation of both satellite-based and satellite-free centromeres, as well as non-centromeric satellite loci, revealing notable centromeric plasticity. They also allowed de...
Four Haylages, One Metabonome: Defining Diet Driven Metabolic Shifts in Ponies. Haylage is widely fed to all categories of stabled horses across Europe and New Zealand. Haylage can vary from high energy nutrient dense forage to low energy highly fibrous fodder, yet little is known about the impact different haylages have on metabolism in horses. This study provides the first direct comparison of feeding four different haylages: early cut (Lolium multiflorum), later cut (Lolium perenne) rye grass (R1 and R2); early and late cut meadow grass (M1 and M2), on urinary and faecal metabonomics, in ponies at maintenance. Using replicated Latin Square design, eight individually ho...
Implications of dominance deviations for reproductive and morphological traits in the genetic management of the Pura Raza Española horse. Dominance is a non-additive genetic effect involving allele interaction at the same locus. In animal breeding, it has often been ignored due to its complexity and the low accuracy of pedigree-based estimates. This study analysed dominance variance components for reproductive traits [age at first foaling (AFF), reproductive efficiency (RE), interval between first and second foaling (I12)] and morphological traits [scapulo-ischial length (SIL), dorsal sternal diameter (DSD), knee circumference (KC)] in Pura Raza Española (PRE) mares. The aim was to assess the magnitude of dominance effects acro...
Race type and race distance as determinants of unseat events in U.S. steeplechase racing, 2023-2025. Unseat events in steeplechase racing, including falls and lost-rider incidents, affect equine welfare and jockey safety. Timber races are often perceived as higher risk than hurdle/fence races, but are also longer. Methods: This retrospective observational study analyzed 3070 U.S. National Steeplechase Association hurdle/fence and timber starts from 2023 to 2025. Flat, steeplethon, training, and apprentice/amateur-apprentice starts were excluded. Crude rates of falls, lost-rider incidents, and combined unseat events were compared between race types. Multivariable Poisson regression examined ...
Advanced 3D Horse Reconstruction: Integrating Image-to-3D Modelling and Non-Rigid Registration for On-Barn Body Measurements. Precision livestock farming (PLF) relies on high-precision three-dimensional (3D) horse reconstruction and automatic body measurement to support refined breeding management and health surveillance. However, data collection is restricted by building environment noise and hardware layout constraints; complex equine body shapes and large individual variations induce local geometric distortions in reconstructed models, limiting field deployment. Drawing on generative 3D reconstruction, this study develops the first image-to-3D pipeline that leverages three consumer depth cameras to reconstruct hig...
Effect of neonatal rib fracture repair on racing and sales performance in Thoroughbreds. The racing outcome of horses that have undergone surgical repair of neonatal rib fractures is not well documented. Objective: To evaluate the impact of surgical repair of neonatal rib fractures on subsequent sales and racing performance in Thoroughbreds. Methods: Retrospective cohort study. Methods: Medical records of neonatal Thoroughbreds that underwent surgical repair of rib fractures at a referral hospital between 2014 and 2025 were reviewed. Sales and racing data were obtained from publicly available databases. Outcomes assessed included sale price at weanling and yearling sales, total ca...
Differences between horses (Equus caballus) displaying oral and locomotor stereotypies in their responses to a stable mirror. Recent cross-species analyses suggest that the different forms of stereotypic behaviour have heterogeneous causal mechanisms. In ungulates, there are indications that some forms of locomotor stereotypy may be linked to social factors. Using the domestic horse as a model species within this clade, we investigated whether individuals displaying the locomotor stereotypy box-walking (n=6) demonstrated greater responses to a stable mirror, intended to mimic presence of a conspecific, than horses displaying the oral stereotypy crib-biting (n=5) and non-stereotypic horses (n=5). After a 24hr baseline...
Somatic cell nuclear transfer as a complementary tool for genetic conservation of the Peruvian Paso horse. The Peruvian Paso horse, a breed of national significance in Peru known for its unique gait, has been selectively bred for nearly 500 years and now faces potential risks due to reduced genetic diversity. To investigate the potential of somatic cell nuclear transfer to enhance genetic conservation strategies, a program was initiated to produce cloned Peruvian Paso foals. Skin biopsies from a highly awarded stallion with exceptional breed-defining traits were used as the source of donor somatic cells. Of the 15 cloned embryos reconstructed, seven blastocysts were produced, and five were transfer...
Species-Specific Mechanisms of Sperm Transport: Predominant Roles of Motility in Ewes and Uterine Contractility in Mares. The factors controlling sperm transport within the female genital tract vary among species. The aim of this study was to quantify the respective roles of sperm motility and uterine contractions in passage of sperm within the reproductive tract of the mare and ewe. Sperm imaging was performed in vivo within the female genital tract of mares and ewes using probe-based confocal laser endomicroscopy (pCLE) after intrauterine insemination during two stages of the cycle characterized by high (oestrus) or low (luteal phase) uterine contractility. Fluorescent microbeads (2 µm in diameter) were insemi...
Combined effects of pre-freeze cholesterol-loaded cyclodextrin and post-thaw pentoxifylline on the functional longevity of cryopreserved stallion sperm. Cryopreservation causes structural and metabolic damage to stallion spermatozoa, impairing post-thaw functional competence. Objective: This study evaluated whether cholesterol-loaded cyclodextrin (CLC) supplementation before freezing, combined with pentoxifylline (PTX) after thawing, improves the functional quality, oxidative status, mitochondrial activity, and preliminary fertility outcomes of cryopreserved stallion semen. Methods: Semen from twelve stallions was assigned to four CLC concentrations (0, 1, 1.5, and 2 mg), frozen, thawed, and divided into subgroups with or without PTX supplemen...
A Global Structural Variation Map Reveals Novel Variants for Body Conformation and Racing Ability in Horses. The selection of horses has been instrumental in shaping long-range mobility, advancing warfare strategies, and diversifying equine phenotypes. However, the structural variants (SVs) favored by this process remain largely unexplored. Utilizing high-fidelity Pacific Biosciences sequencing, we assembled three high-quality horse genomes, incorporating 237 Mb (9.48%) of novel sequences relative to the existing reference genome. These assemblies achieved an average Benchmarking Universal Single-Copy Orthologs completeness of 95.1%. By employing a graph-based approach, we genotyped 23,163 high-con...
Environmental and genetic effects on measured hock bone proportions in young Polish Warmblood horses undergoing performance test training for breeding horses. The hock bone proportions in young Polish Warmblood horses (69) were studied based on x-ray image measurements done during official breeding horse performance testing. Six measurements were used to identify 4 width and length proportion indices. The radiological examinations were done before and after horse training, which consists of work with or without the rider at walk, trot and canter (40-50min) with some light class (< 100cm) jumping (<12 jumps) 6 days a week. The training effect was investigated using analysis of variance (procedure MIXED, Statistical Analysis System). The statist...
Three-year evaluation of anthelmintic treatment efficacy against equine strongyles in France using FECRT. Reduced anthelmintic efficacy against strongyles in equids is a widespread concern, but up-to-date field data are scarce. The aim of this study was to evaluate, over a three-year period, the efficacy of the anthelmintic (AH) molecules available in France (fenbendazole, pyrantel, ivermectin and moxidectin) against strongyles in equids using faecal egg count reduction tests (FECRTs). A total of 104 complete FECRTs (i.e., required sample size reached) were conducted in 98 groups, involving 749 equids kept in 70 facilities. Fenbendazole-resistant populations were detected in 8/9 groups (89%) from ...
Phenotypic Definition Influences Genetic Inference and Predictive Ability for Reining Performance in Quarter Horses Using Random Regression Models. Reining performance is influenced by subjectivity and competition structure, challenging genetic evaluation. This study estimated genetic parameters for reining performance in Brazilian Quarter Horses using random regression models (RRM) and evaluated how alternative phenotypic definitions affect genetic inference and predictive ability. A dataset comprising 21,165 longitudinal records from 1603 horses was analyzed, comparing within-group rank (RANK) and Blom-transformed rank (BLOM). Model comparison indicated that cubic RRM provided the best fit for both phenotypes. Heritability estimates wer...
Growth Performance, Milk Productivity, Productive Longevity, and Milk Composition of Mugalzhar Horses. The Mugalzhar horse is an important native breed of Kazakhstan, valued for its adaptability, milk production, and meat productivity under extensive pasture-based management. This study evaluated the relationships among first-lactation milk yield, productive longevity, lifetime milk production, growth, morphometric traits, and milk composition in the Mugalzhar horse breed using data from 100 mares with complete lifetime production records, 108 adult mares and 12 stallions for morphometric evaluation, and 68 foals (35 colts and 33 fillies) for growth analysis. The study was conducted on Mugalzha...
Phenotypic and genetic factors that affect the likelihood of Standardbred foals achieving a race start. This study was conducted to quantify the probability of a Standardbred foal attaining early career milestones and to estimate some environmental and genetic factors that influence achievement of those milestones. Data for all Standardbred foals registered at birth in New Zealand from 1995 to 2018 were used to estimate variance components and fixed effects influencing attainment of three early-career traits; registered with trainer (REG), starting in a trial (TRIAL) and starting in a race (RACE). The study population comprised 65,256 foals. Of these, 65.5% attained REG, 55.4% progressed to TRIA...
Density gradient centrifugation preserves sperm kinetics and morphology in stallion ejaculates with severe urospermia. Urospermia is a frequent cause of subfertility in stallions due to the rapid deterioration of sperm quality. Objective: This study aimed to evaluate the effectiveness of different processing methods in minimizing the deleterious effects of urine on cooled equine semen. Methods: Ejaculates from 12 stallions were subjected to simple dilution, conventional centrifugation, and colloidal density gradient centrifugation, under challenges of 0%, 20%, and 50% urine, and stored at 5 °C for 24 h. Results: A severe dose-dependent effect was observed: increasing urinary concentration progressively reduce...
Global distribution of cattle, horses, goats, sheep and buffaloes at 1 km resolution for 2000-2022 based on subnational census data and spatiotemporal machine learning. The article describes the production and evaluation of annual livestock densities and headcounts of cattle, horses, sheep, goats and buffaloes (including 95% probability prediction intervals) at 1 km spatial resolution for the 2000-2022 period using spatiotemporal machine learning. A compilation of subnational livestock census data has been imported, harmonized and used as reference data (55,336 census polygons and 939,257 individual data entries; covering 147 countries) to build predictive models. A large stack of multi-source harmonized raster data sets (128 individual layers) were used as f...
Demographic change and selection patterns in thoroughbred racing horses over the 20th century. The Thoroughbred horse is a legacy of centuries of selective breeding for speed, emerging from the admixture of British mares and imported Oriental stallions. While previous work explored its genetic diversity, inbreeding, and selection signatures, the breed demographic and selection dynamics during the 20-century remain poorly understood. Here, we sequenced the genome of Phar Lap, a late-1920s/early-1930s racing champion, and analyzed the largest time-series of Thoroughbred whole-genome sequences, within a global panel of 850 horse genomes. Demographic modeling reveals a marked decline in gen...
Preliminary Metabolomic Analysis: Serum Metabolomic Dynamics During Estrus Synchronization in Kazakh Mares. This study aimed to analyze the differences in serum metabolomes at different stages of estrus synchronization in Kazakh horses, to characterize dynamic changes in serum metabolites during estrus synchronization, and to screen potential metabolic markers and key regulatory pathways. Four sampling stages (M1: intravaginal device insertion; M3: device removal, labeled consistently with the pre-experiment timeline; P: 24 h post-PG injection; L: tertiary follicle emergence) were selected. The research results showed that 37 significantly different metabolites (DAMs) were identified in the M1-vs.-M...
Sequencing and Differential Analysis of miRNA in the Ovaries of Kazakh Horses During Estrus and Anestrus States. To reveal the regulatory role of miRNA in the estrous cycle transition of Kazakh horse ovaries and improve their reproductive efficiency, this study took the ovaries of Kazakh horses in the estrus period (DY group) and the quiescent period (DB group) as research objects. Small RNA sequencing and bioinformatics analysis were used to systematically analyze the expression characteristics and functional pathways of miRNA under the two physiological states. A total of 161 million high-quality miRNA tags were obtained through sequencing. Principal component analysis showed that the intra-group repea...
Isolation of high-quality stallion spermatozoa: a comparison of methods and their effects on sperm quality and yield, DNA damage, and functional competence by ICSI. Intracytoplasmic sperm injection (ICSI) is the primary method for equine in vitro embryo production, yet outcomes may be influenced by sperm selection techniques. Objective: This study compared four isolation methods: EquiPure™, Vetmotl™, Felix™, and Samson™, to assess effects on sperm quality and embryo development. Methods: Semen was collected from four fertile stallions, processed and evaluated for sperm motility, viability, DNA integrity, and yield of high-quality cells relative to input. Isolated samples were compared to non-isolated (centrifuged) samples. Spermatozoa were used fo...
Simple and efficient HPLC-MS/MS method for simultaneous extraction and quantification of anthelmintics in equine manure. Anthelmintic treatment is a common practice in horses. The presence of pharmaceutical residues in fields and pastures is well-documented affecting various organisms, like nematodes. This study describes the development and validation of a high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) method using multiple reaction monitoring (MRM) for extracting and determining the concentrations of four commonly used anthelmintics in horse manure. Manure was initially dried, then spiked with various concentrations (10-10,000 ng) of anthelmintics and extracted using an acetonit...
Sensory-driven neck-limb coordination mechanisms for walk-trot-gallop gait transitions. Quadruped animals exhibit various gait patterns and switch from one to another depending on their speed. These gait patterns involve complex whole-body coordination and are mainly controlled by a distributed neural network consisting of central pattern generators (CPGs) and peripheral sensory feedback. However, how these neural networks generate various types of whole-body coordination remains unclear. Here, we focus on horse locomotion and present a neural network model that reproduces walk-trot-gallop transitions by changing only a single parameter related to speed. This model uses ground re...
Reply to Henshall et al. Commentary on “MacKechnie-Guire et al. Measuring Noseband Tightness on the Lateral Aspect of the Horse’s Face. Animals 2025, 15, 537”. In a paper published in 2017, Doherty et al [...].
